Wall clock time and date at job start Tue Mar 31 2020 06:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37643 * 120.10412 * 2 1 4 4 C 1.39233 * 119.95015 * 180.23506 * 3 2 1 5 5 N 1.39014 * 119.92769 * 179.75974 * 4 3 2 6 6 C 1.46500 * 119.99917 * 179.71888 * 5 4 3 7 7 C 1.52999 * 109.46863 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47026 * 300.00010 * 7 6 5 9 9 C 1.52997 * 109.47436 * 60.00304 * 7 6 5 10 10 C 1.53001 * 109.47188 * 180.02562 * 7 6 5 11 11 C 1.50700 * 109.47560 * 179.97438 * 10 7 6 12 12 H 1.08004 * 119.99453 * 359.97438 * 11 10 7 13 13 C 1.37870 * 120.00216 * 180.02562 * 11 10 7 14 14 N 1.31519 * 120.00153 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00125 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47141 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47349 * 119.99325 * 15 13 11 18 18 H 1.48499 * 109.46857 * 239.99620 * 15 13 11 19 19 C 1.39241 * 120.14662 * 359.48347 * 4 3 2 20 20 C 1.36573 * 120.20293 * 0.23221 * 19 4 3 21 21 C 1.39859 * 120.09879 * 179.69469 * 2 1 3 22 22 C 1.47382 * 120.07331 * 0.04790 * 21 2 1 23 23 O 1.21514 * 120.00212 * 353.73470 * 22 21 2 24 24 O 1.34761 * 120.00073 * 173.74011 * 22 21 2 25 25 H 1.09003 * 109.47119 * 263.71131 * 1 2 3 26 26 H 1.08996 * 109.46853 * 23.71237 * 1 2 3 27 27 H 1.08992 * 109.47311 * 143.71126 * 1 2 3 28 28 H 1.08003 * 120.02612 * 359.97040 * 3 2 1 29 29 H 0.96994 * 119.99935 * 359.72440 * 5 4 3 30 30 H 1.09005 * 109.47070 * 60.00509 * 6 5 4 31 31 H 1.09003 * 109.47171 * 300.00438 * 6 5 4 32 32 H 1.08999 * 109.47252 * 60.00360 * 8 7 6 33 33 H 1.08999 * 109.47178 * 180.02562 * 8 7 6 34 34 H 1.09005 * 109.47359 * 300.00067 * 8 7 6 35 35 H 1.09003 * 109.47077 * 59.99569 * 9 7 6 36 36 H 1.08999 * 109.47045 * 179.97438 * 9 7 6 37 37 H 1.09007 * 109.46754 * 299.99967 * 9 7 6 38 38 H 1.08998 * 109.47031 * 300.00473 * 10 7 6 39 39 H 1.09005 * 109.47154 * 59.99959 * 10 7 6 40 40 H 0.96999 * 120.00158 * 180.02562 * 14 13 11 41 41 H 1.07997 * 119.89975 * 180.25692 * 19 4 3 42 42 H 1.07995 * 119.97907 * 180.02562 * 20 19 4 43 43 H 0.96697 * 117.00359 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1908 0.0000 4 6 3.5897 1.1870 -0.0049 5 7 4.2865 2.3899 -0.0100 6 6 5.7515 2.3878 -0.0090 7 6 6.2634 3.8296 -0.0146 8 6 5.7553 4.5464 -1.2672 9 6 5.7537 4.5568 1.2313 10 6 7.7935 3.8275 -0.0142 11 6 8.2978 5.2476 -0.0204 12 1 7.5971 6.0695 -0.0246 13 6 9.6537 5.4976 -0.0217 14 7 10.5069 4.4968 -0.0170 15 14 10.2788 7.2579 -0.0286 16 1 9.1252 8.1929 -0.0326 17 1 11.1043 7.4948 1.1828 18 1 11.1040 7.4853 -1.2421 19 6 4.2858 -0.0189 0.0010 20 6 3.6070 -1.2040 0.0068 21 6 2.2084 -1.2100 0.0064 22 6 1.4753 -2.4885 0.0122 23 8 0.2655 -2.4948 0.1262 24 8 2.1467 -3.6507 -0.1089 25 1 -0.3633 -0.1126 1.0215 26 1 -0.3633 0.9409 -0.4133 27 1 -0.3633 -0.8283 -0.6082 28 1 1.6595 2.1273 -0.0005 29 1 3.8027 3.2306 -0.0141 30 1 6.1147 1.8695 -0.8964 31 1 6.1135 1.8775 0.8836 32 1 4.6653 4.5479 -1.2679 33 1 6.1204 5.5734 -1.2714 34 1 6.1185 4.0283 -2.1548 35 1 6.1157 4.0461 2.1236 36 1 6.1189 5.5838 1.2274 37 1 4.6636 4.5583 1.2305 38 1 8.1558 3.3167 0.8779 39 1 8.1563 3.3096 -0.9021 40 1 11.4608 4.6727 -0.0175 41 1 5.3657 -0.0171 0.0013 42 1 4.1505 -2.1372 0.0118 43 1 1.6228 -4.4634 -0.0994 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591270436.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:54 Heat of formation + Delta-G solvation = -87.238198 kcal Electronic energy + Delta-G solvation = -22737.021625 eV Core-core repulsion = 19360.082733 eV Total energy + Delta-G solvation = -3376.938893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55814 -39.25373 -37.58452 -36.18656 -34.60257 -32.52564 -32.28026 -29.78711 -27.47278 -27.11428 -26.59367 -25.83091 -23.66043 -22.83850 -22.14747 -20.25802 -18.44728 -18.09015 -17.18215 -16.88361 -16.39883 -15.74430 -15.50038 -14.66967 -14.56427 -14.51660 -13.99882 -13.60937 -13.58877 -13.27026 -13.03404 -12.84808 -12.83309 -12.34341 -12.24877 -12.12527 -11.99198 -11.54611 -11.27933 -11.09599 -11.02599 -10.89428 -10.73194 -10.46893 -10.30854 -10.17911 -10.14128 -9.81612 -9.30123 -9.00750 -8.85820 -8.43319 -7.44278 -6.07493 -4.08757 0.91495 1.43376 2.62378 3.07775 3.25409 3.33900 3.35941 3.51008 3.83852 4.39469 4.73760 4.80933 5.12441 5.22421 5.28361 5.31980 5.38827 5.47432 5.50060 5.65669 5.69176 5.75836 5.86115 6.01979 6.06158 6.07123 6.14047 6.21439 6.27104 6.34062 6.46306 6.54866 6.54917 6.58808 6.73193 6.94610 6.98378 7.01520 7.33682 7.53775 7.65595 7.73281 7.90799 7.90878 8.32765 8.95998 9.55067 11.03995 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037460 B = 0.002754 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.281796 B =10164.511810 C =10708.755465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.035 3.965 3 C -0.227 4.227 4 C 0.270 3.730 5 N -0.721 5.721 6 C 0.124 3.876 7 C -0.071 4.071 8 C -0.127 4.127 9 C -0.127 4.127 10 C 0.036 3.964 11 C -0.512 4.512 12 H 0.060 0.940 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.222 4.222 20 C -0.004 4.004 21 C -0.217 4.217 22 C 0.531 3.469 23 O -0.528 6.528 24 O -0.518 6.518 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.127 0.873 29 H 0.402 0.598 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.029 0.971 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.029 0.971 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.260 0.740 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.147 -10.284 -0.188 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.034 3.966 3 C -0.250 4.250 4 C 0.159 3.841 5 N -0.344 5.344 6 C 0.001 3.999 7 C -0.072 4.072 8 C -0.185 4.185 9 C -0.185 4.185 10 C -0.001 4.001 11 C -0.550 4.550 12 H 0.078 0.922 13 C -0.145 4.145 14 N -0.534 5.534 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.244 4.244 20 C -0.023 4.023 21 C -0.221 4.221 22 C 0.379 3.621 23 O -0.419 6.419 24 O -0.329 6.329 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.145 0.855 29 H 0.239 0.761 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -15.785 -9.920 -0.162 18.644 hybrid contribution 0.131 0.731 0.022 0.743 sum -15.654 -9.188 -0.140 18.152 Atomic orbital electron populations 1.21110 0.90408 1.02941 1.03430 1.19627 0.96002 0.90760 0.90222 1.20359 0.91793 0.97853 1.14953 1.18202 0.91061 0.87017 0.87813 1.45183 1.07045 1.05144 1.77073 1.21775 0.77665 0.99392 1.01094 1.20879 1.00170 0.90910 0.95192 1.21760 0.97505 1.02033 0.97163 1.21760 0.97504 1.01994 0.97202 1.19097 0.86015 0.97608 0.97405 1.21205 0.91329 0.92173 1.50285 0.92217 1.25006 0.97188 0.96807 0.95459 1.69964 1.02071 1.30479 1.50885 0.86590 0.78939 0.85207 0.77591 1.19796 1.21080 1.21085 1.20449 1.00513 0.90775 1.12681 1.20849 0.92442 0.98192 0.90807 1.18461 0.93342 0.89315 1.20964 1.20888 0.85301 0.84095 0.71817 1.90811 1.15502 1.87705 1.47925 1.84597 1.45496 1.17141 1.85710 0.90630 0.92237 0.89071 0.85549 0.76142 0.91955 0.91965 0.95209 0.91401 0.93353 0.93356 0.91400 0.95204 0.96365 0.96364 0.93042 0.85094 0.84971 0.73442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 8.73 36.01 0.31 -1.02 16 2 C 0.04 0.43 5.91 -104.23 -0.62 -0.18 16 3 C -0.23 -2.71 9.51 -39.43 -0.37 -3.09 16 4 C 0.27 3.47 6.65 -83.86 -0.56 2.91 16 5 N -0.72 -9.37 5.11 -58.63 -0.30 -9.67 16 6 C 0.12 1.88 3.79 -4.04 -0.02 1.86 16 7 C -0.07 -1.25 0.54 -154.51 -0.08 -1.34 16 8 C -0.13 -2.13 8.05 37.16 0.30 -1.84 16 9 C -0.13 -2.13 8.05 37.16 0.30 -1.84 16 10 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 11 C -0.51 -13.14 7.65 -34.44 -0.26 -13.41 16 12 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 13 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 14 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 15 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.22 -2.80 9.23 -39.81 -0.37 -3.17 16 20 C 0.00 -0.04 9.55 -39.58 -0.38 -0.42 16 21 C -0.22 -2.73 5.88 -104.96 -0.62 -3.35 16 22 C 0.53 6.40 8.19 34.45 0.28 6.68 16 23 O -0.53 -7.23 14.12 -19.28 -0.27 -7.50 16 24 O -0.52 -4.74 12.69 -40.66 -0.52 -5.25 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 27 H 0.09 1.09 5.85 -51.93 -0.30 0.79 16 28 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 29 H 0.40 4.85 6.16 -40.82 -0.25 4.60 16 30 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 31 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 32 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 33 H 0.07 1.25 6.61 -51.93 -0.34 0.90 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 37 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.13 1.61 6.69 -52.49 -0.35 1.26 16 42 H 0.13 1.36 7.61 -52.49 -0.40 0.96 16 43 H 0.41 1.84 9.11 45.56 0.42 2.26 16 LS Contribution 346.33 15.07 5.22 5.22 Total: -1.00 -29.75 346.33 -7.94 -37.69 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.50 Total: 4.73 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.29 Total: -16.04 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.44 Total: -34.58 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.79 Total: -12.75 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.75 -7.94 -37.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591270436.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.544 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds