Wall clock time and date at job start Tue Mar 31 2020 06:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37643 * 120.10412 * 2 1 4 4 C 1.39233 * 119.95015 * 180.23506 * 3 2 1 5 5 N 1.39014 * 119.92769 * 179.75974 * 4 3 2 6 6 C 1.46500 * 119.99917 * 179.71888 * 5 4 3 7 7 C 1.52999 * 109.46863 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47026 * 300.00010 * 7 6 5 9 9 C 1.52997 * 109.47436 * 60.00304 * 7 6 5 10 10 C 1.53001 * 109.47188 * 180.02562 * 7 6 5 11 11 C 1.50700 * 109.47560 * 179.97438 * 10 7 6 12 12 H 1.08004 * 119.99453 * 359.97438 * 11 10 7 13 13 C 1.37870 * 120.00216 * 180.02562 * 11 10 7 14 14 N 1.31519 * 120.00153 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00125 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47141 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47349 * 119.99325 * 15 13 11 18 18 H 1.48499 * 109.46857 * 239.99620 * 15 13 11 19 19 C 1.39241 * 120.14662 * 359.48347 * 4 3 2 20 20 C 1.36573 * 120.20293 * 0.23221 * 19 4 3 21 21 C 1.39859 * 120.09879 * 179.69469 * 2 1 3 22 22 C 1.47382 * 120.07331 * 0.04790 * 21 2 1 23 23 O 1.21514 * 120.00212 * 353.73470 * 22 21 2 24 24 O 1.34761 * 120.00073 * 173.74011 * 22 21 2 25 25 H 1.09003 * 109.47119 * 263.71131 * 1 2 3 26 26 H 1.08996 * 109.46853 * 23.71237 * 1 2 3 27 27 H 1.08992 * 109.47311 * 143.71126 * 1 2 3 28 28 H 1.08003 * 120.02612 * 359.97040 * 3 2 1 29 29 H 0.96994 * 119.99935 * 359.72440 * 5 4 3 30 30 H 1.09005 * 109.47070 * 60.00509 * 6 5 4 31 31 H 1.09003 * 109.47171 * 300.00438 * 6 5 4 32 32 H 1.08999 * 109.47252 * 60.00360 * 8 7 6 33 33 H 1.08999 * 109.47178 * 180.02562 * 8 7 6 34 34 H 1.09005 * 109.47359 * 300.00067 * 8 7 6 35 35 H 1.09003 * 109.47077 * 59.99569 * 9 7 6 36 36 H 1.08999 * 109.47045 * 179.97438 * 9 7 6 37 37 H 1.09007 * 109.46754 * 299.99967 * 9 7 6 38 38 H 1.08998 * 109.47031 * 300.00473 * 10 7 6 39 39 H 1.09005 * 109.47154 * 59.99959 * 10 7 6 40 40 H 0.96999 * 120.00158 * 180.02562 * 14 13 11 41 41 H 1.07997 * 119.89975 * 180.25692 * 19 4 3 42 42 H 1.07995 * 119.97907 * 180.02562 * 20 19 4 43 43 H 0.96697 * 117.00359 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1908 0.0000 4 6 3.5897 1.1870 -0.0049 5 7 4.2865 2.3899 -0.0100 6 6 5.7515 2.3878 -0.0090 7 6 6.2634 3.8296 -0.0146 8 6 5.7553 4.5464 -1.2672 9 6 5.7537 4.5568 1.2313 10 6 7.7935 3.8275 -0.0142 11 6 8.2978 5.2476 -0.0204 12 1 7.5971 6.0695 -0.0246 13 6 9.6537 5.4976 -0.0217 14 7 10.5069 4.4968 -0.0170 15 14 10.2788 7.2579 -0.0286 16 1 9.1252 8.1929 -0.0326 17 1 11.1043 7.4948 1.1828 18 1 11.1040 7.4853 -1.2421 19 6 4.2858 -0.0189 0.0010 20 6 3.6070 -1.2040 0.0068 21 6 2.2084 -1.2100 0.0064 22 6 1.4753 -2.4885 0.0122 23 8 0.2655 -2.4948 0.1262 24 8 2.1467 -3.6507 -0.1089 25 1 -0.3633 -0.1126 1.0215 26 1 -0.3633 0.9409 -0.4133 27 1 -0.3633 -0.8283 -0.6082 28 1 1.6595 2.1273 -0.0005 29 1 3.8027 3.2306 -0.0141 30 1 6.1147 1.8695 -0.8964 31 1 6.1135 1.8775 0.8836 32 1 4.6653 4.5479 -1.2679 33 1 6.1204 5.5734 -1.2714 34 1 6.1185 4.0283 -2.1548 35 1 6.1157 4.0461 2.1236 36 1 6.1189 5.5838 1.2274 37 1 4.6636 4.5583 1.2305 38 1 8.1558 3.3167 0.8779 39 1 8.1563 3.3096 -0.9021 40 1 11.4608 4.6727 -0.0175 41 1 5.3657 -0.0171 0.0013 42 1 4.1505 -2.1372 0.0118 43 1 1.6228 -4.4634 -0.0994 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591270436.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:54 Heat of formation + Delta-G solvation = -104.171304 kcal Electronic energy + Delta-G solvation = -22737.755900 eV Core-core repulsion = 19360.082733 eV Total energy + Delta-G solvation = -3377.673167 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.47173 -40.26555 -38.85517 -37.05615 -35.86876 -34.29246 -33.30583 -30.91216 -28.91564 -28.41225 -27.96579 -27.06294 -24.98702 -24.23519 -23.08358 -21.27780 -19.78841 -19.00197 -18.35814 -18.11539 -17.94975 -16.73139 -16.56748 -16.40179 -15.82065 -15.51949 -15.17392 -14.79916 -14.62960 -14.41950 -14.24235 -14.10764 -14.01014 -13.87896 -13.32844 -13.20113 -13.10214 -12.85243 -12.69501 -12.56627 -12.39249 -12.33833 -12.24768 -11.98255 -11.83784 -11.57538 -11.10540 -10.98475 -10.97001 -10.83542 -10.51353 -9.77947 -8.45201 -8.14682 -6.21164 -0.03469 0.50447 1.40359 1.42625 1.53059 1.69337 2.28448 2.39712 2.48878 2.89664 3.20430 3.82315 3.93070 3.97295 4.10632 4.22326 4.26267 4.34912 4.49195 4.61319 4.70109 4.74798 4.75036 4.85821 4.88138 4.96999 5.02050 5.11066 5.12283 5.21023 5.30089 5.40010 5.44510 5.50877 5.53130 5.56210 5.63674 5.73959 5.80599 5.81383 5.90909 6.25130 6.35633 6.76256 6.94230 7.12952 7.46511 8.97657 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037460 B = 0.002754 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.281796 B =10164.511810 C =10708.755465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.025 3.975 3 C -0.222 4.222 4 C 0.260 3.740 5 N -0.716 5.716 6 C 0.139 3.861 7 C -0.064 4.064 8 C -0.122 4.122 9 C -0.122 4.122 10 C 0.041 3.959 11 C -0.513 4.513 12 H 0.068 0.932 13 C -0.002 4.002 14 N -0.936 5.936 15 Si 0.953 3.047 16 H -0.260 1.260 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.233 4.233 20 C -0.003 4.003 21 C -0.229 4.229 22 C 0.533 3.467 23 O -0.548 6.548 24 O -0.512 6.512 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.147 0.853 29 H 0.409 0.591 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.064 0.936 38 H -0.010 1.010 39 H -0.009 1.009 40 H 0.259 0.741 41 H 0.129 0.871 42 H 0.146 0.854 43 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.035 -9.755 -0.221 20.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.024 3.976 3 C -0.244 4.244 4 C 0.151 3.849 5 N -0.342 5.342 6 C 0.015 3.985 7 C -0.065 4.065 8 C -0.179 4.179 9 C -0.179 4.179 10 C 0.003 3.997 11 C -0.551 4.551 12 H 0.086 0.914 13 C -0.199 4.199 14 N -0.577 5.577 15 Si 0.779 3.221 16 H -0.184 1.184 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.255 4.255 20 C -0.022 4.022 21 C -0.233 4.233 22 C 0.382 3.618 23 O -0.442 6.442 24 O -0.326 6.326 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.165 0.835 29 H 0.247 0.753 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.068 0.932 41 H 0.147 0.853 42 H 0.164 0.836 43 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -17.704 -9.410 -0.197 20.051 hybrid contribution 0.682 0.438 0.030 0.811 sum -17.022 -8.972 -0.168 19.243 Atomic orbital electron populations 1.21067 0.89503 1.03494 1.03307 1.19878 0.96789 0.90852 0.90119 1.20541 0.91362 0.98619 1.13915 1.18296 0.91516 0.86769 0.88362 1.44885 1.05733 1.05649 1.77895 1.21392 0.79181 0.97260 1.00685 1.20675 0.96283 0.93046 0.96471 1.21686 0.99658 1.00480 0.96089 1.21686 0.99653 1.00442 0.96135 1.18966 0.90217 0.95809 0.94682 1.21626 0.91484 0.93521 1.48506 0.91429 1.25863 0.97791 1.00671 0.95599 1.70098 1.02263 1.32648 1.52698 0.85576 0.78537 0.80711 0.77311 1.18424 1.21052 1.21053 1.20562 1.00624 0.91248 1.13095 1.20982 0.92386 0.98571 0.90265 1.18718 0.93731 0.90002 1.20846 1.20823 0.84942 0.84673 0.71396 1.90807 1.16270 1.88141 1.48948 1.84547 1.45589 1.17463 1.85015 0.90637 0.90326 0.90245 0.83542 0.75321 0.92503 0.92528 0.91706 0.93124 0.94161 0.94172 0.93119 0.91707 0.99115 0.99109 0.93170 0.85273 0.83639 0.71048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.73 71.24 0.62 -1.72 16 2 C 0.03 0.57 5.91 -19.61 -0.12 0.45 16 3 C -0.22 -4.75 9.51 22.37 0.21 -4.54 16 4 C 0.26 6.18 6.65 38.48 0.26 6.44 16 5 N -0.72 -17.04 5.11 -339.42 -1.73 -18.78 16 6 C 0.14 4.10 3.79 86.38 0.33 4.43 16 7 C -0.06 -2.23 0.54 -52.18 -0.03 -2.26 16 8 C -0.12 -3.90 8.05 71.98 0.58 -3.33 16 9 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 10 C 0.04 1.94 4.04 29.85 0.12 2.06 16 11 C -0.51 -26.64 7.65 25.60 0.20 -26.44 16 12 H 0.07 3.34 5.68 -2.91 -0.02 3.33 16 13 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 14 N -0.94 -55.09 13.29 21.45 0.28 -54.81 16 15 Si 0.95 42.79 29.54 68.60 2.03 44.81 16 16 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 C -0.23 -5.62 9.23 22.12 0.20 -5.42 16 20 C 0.00 -0.07 9.55 22.27 0.21 0.15 16 21 C -0.23 -5.43 5.88 -20.08 -0.12 -5.55 16 22 C 0.53 12.09 8.19 70.23 0.58 12.66 16 23 O -0.55 -14.37 14.12 19.79 0.28 -14.10 16 24 O -0.51 -8.42 12.69 -56.71 -0.72 -9.14 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 1.23 8.04 -2.39 -0.02 1.21 16 27 H 0.08 1.80 5.85 -2.39 -0.01 1.79 16 28 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 29 H 0.41 8.50 6.16 -92.71 -0.57 7.93 16 30 H 0.06 1.74 7.93 -2.38 -0.02 1.72 16 31 H 0.06 1.73 7.93 -2.39 -0.02 1.71 16 32 H 0.06 1.62 6.86 -2.39 -0.02 1.60 16 33 H 0.05 1.79 6.61 -2.39 -0.02 1.77 16 34 H 0.04 1.33 8.14 -2.38 -0.02 1.32 16 35 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.79 6.62 -2.39 -0.02 1.78 16 37 H 0.06 1.62 6.86 -2.38 -0.02 1.60 16 38 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 40 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 41 H 0.13 3.11 6.69 -2.91 -0.02 3.09 16 42 H 0.15 2.78 7.61 -2.91 -0.02 2.76 16 43 H 0.43 2.99 9.11 -74.06 -0.67 2.31 16 Total: -1.00 -64.47 346.33 4.01 -60.46 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -0.21 Total: 17.60 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 4.08 Total: -26.05 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -1.45 Total: -73.58 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.44 Total: -23.23 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -64.47 4.01 -60.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591270436.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.714 kcal (2) G-P(sol) polarization free energy of solvation -64.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds