Wall clock time and date at job start Tue Mar 31 2020 06:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38287 * 119.97253 * 2 1 4 4 C 1.38245 * 120.11458 * 180.02562 * 3 2 1 5 5 C 1.38169 * 120.05206 * 359.97438 * 4 3 2 6 6 C 1.38701 * 119.94593 * 0.02562 * 5 4 3 7 7 O 1.35898 * 120.05861 * 180.02562 * 6 5 4 8 8 C 1.42905 * 116.99851 * 0.02562 * 7 6 5 9 9 C 1.53003 * 109.46980 * 179.97438 * 8 7 6 10 10 N 1.46894 * 109.47052 * 65.00094 * 9 8 7 11 11 C 1.48562 * 111.00344 * 69.87193 * 10 9 8 12 12 C 1.54379 * 104.69842 * 159.09785 * 11 10 9 13 13 C 1.54257 * 105.06256 * 336.08765 * 12 11 10 14 14 O 1.42901 * 110.32530 * 118.99711 * 13 12 11 15 15 C 1.50699 * 110.32398 * 241.10546 * 13 12 11 16 16 H 1.07999 * 120.00074 * 118.54876 * 15 13 12 17 17 C 1.37874 * 120.00225 * 298.54451 * 15 13 12 18 18 N 1.31516 * 119.99741 * 0.02562 * 17 15 13 19 19 Si 1.86792 * 120.00595 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46923 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47381 * 119.99869 * 19 17 15 22 22 H 1.48500 * 109.47425 * 240.00505 * 19 17 15 23 23 C 1.48856 * 111.13147 * 185.19313 * 10 9 8 24 24 C 1.38128 * 119.97404 * 180.26222 * 2 1 3 25 25 H 1.08999 * 109.47317 * 89.99681 * 1 2 3 26 26 H 1.09000 * 109.46975 * 210.00148 * 1 2 3 27 27 H 1.09006 * 109.46803 * 329.99220 * 1 2 3 28 28 H 1.08001 * 119.94590 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.97621 * 180.02562 * 4 3 2 30 30 H 1.08001 * 120.02644 * 179.97438 * 5 4 3 31 31 H 1.08994 * 109.46983 * 59.99494 * 8 7 6 32 32 H 1.08998 * 109.46470 * 300.00069 * 8 7 6 33 33 H 1.09001 * 109.46965 * 304.99746 * 9 8 7 34 34 H 1.09003 * 109.46723 * 184.99569 * 9 8 7 35 35 H 1.09002 * 110.41176 * 40.25880 * 11 10 9 36 36 H 1.09002 * 110.41204 * 277.93787 * 11 10 9 37 37 H 1.08998 * 110.32365 * 94.98307 * 12 11 10 38 38 H 1.08997 * 110.32065 * 217.08696 * 12 11 10 39 39 H 0.96704 * 113.99873 * 61.45149 * 14 13 12 40 40 H 0.97003 * 119.99972 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.39541 * 82.21242 * 23 10 9 42 42 H 1.09004 * 110.49212 * 319.84370 * 23 10 9 43 43 H 1.08004 * 120.02412 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2014 -0.0005 5 6 4.2752 0.0071 -0.0005 6 6 3.5846 -1.1957 -0.0005 7 8 4.2658 -2.3717 0.0000 8 6 5.6928 -2.2948 0.0011 9 6 6.2796 -3.7079 0.0022 10 7 5.9279 -4.3851 -1.2530 11 6 6.6562 -3.7884 -2.4022 12 6 6.6272 -4.8799 -3.4936 13 6 6.4414 -6.2066 -2.7289 14 8 5.2266 -6.8441 -3.1289 15 6 7.6153 -7.1197 -2.9720 16 1 8.2343 -7.4353 -2.1452 17 6 7.8991 -7.5524 -4.2500 18 7 7.1456 -7.1678 -5.2569 19 14 9.3538 -8.6848 -4.5513 20 1 10.0357 -8.9682 -3.2629 21 1 8.8750 -9.9577 -5.1478 22 1 10.3068 -8.0293 -5.4826 23 6 6.3737 -5.8052 -1.2397 24 6 2.1971 -1.1965 -0.0055 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5140 28 1 1.6565 2.1325 0.0004 29 1 4.1176 2.1382 -0.0001 30 1 5.3552 0.0103 -0.0014 31 1 6.0272 -1.7622 0.8912 32 1 6.0285 -1.7622 -0.8886 33 1 5.8739 -4.2691 0.8440 34 1 7.3644 -3.6506 0.0925 35 1 7.6841 -3.5578 -2.1224 36 1 6.1469 -2.8896 -2.7497 37 1 5.7910 -4.7140 -4.1727 38 1 7.5668 -4.8879 -4.0460 39 1 5.1958 -7.0788 -4.0665 40 1 7.3450 -7.4725 -6.1560 41 1 5.6499 -6.4257 -0.7113 42 1 7.3570 -5.8922 -0.7775 43 1 1.6570 -2.1318 -0.0102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:08 Heat of formation + Delta-G solvation = -61.925456 kcal Electronic energy + Delta-G solvation = -23105.320221 eV Core-core repulsion = 19729.478971 eV Total energy + Delta-G solvation = -3375.841250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11198 -38.46113 -37.45550 -34.85286 -32.57165 -32.09783 -31.43761 -29.80569 -28.14138 -27.48196 -26.93393 -24.42847 -22.82624 -22.47699 -21.09045 -19.91808 -19.35820 -17.79900 -16.98764 -16.10888 -15.99268 -15.86492 -15.20749 -14.86133 -14.35746 -14.22492 -13.98960 -13.68750 -13.46196 -13.25101 -13.06170 -12.85652 -12.34714 -12.23816 -12.05404 -11.75582 -11.62962 -11.34909 -11.29010 -11.10058 -10.97787 -10.73975 -10.61279 -10.46569 -10.39365 -10.31191 -9.82422 -9.10144 -8.83159 -8.57971 -8.13672 -8.07287 -7.77360 -6.19569 -4.28504 1.27498 1.45575 3.20840 3.29743 3.31246 3.33403 3.72890 4.28847 4.54410 4.73022 4.75086 5.00425 5.04539 5.09815 5.13739 5.22276 5.28906 5.35624 5.46645 5.47795 5.60817 5.66791 5.75337 5.84824 5.86921 6.00083 6.03243 6.08388 6.18952 6.32123 6.39649 6.45520 6.53420 6.65230 6.77726 6.96652 7.06216 7.37153 7.50993 7.53647 7.57814 7.70442 7.82246 8.22651 8.74803 9.40490 9.60352 10.86982 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032142 B = 0.003036 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.937921 B = 9221.165347 C = 9488.309932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.169 4.169 4 C -0.078 4.078 5 C -0.221 4.221 6 C 0.143 3.857 7 O -0.292 6.292 8 C 0.069 3.931 9 C 0.043 3.957 10 N -0.502 5.502 11 C 0.029 3.971 12 C -0.118 4.118 13 C 0.253 3.747 14 O -0.585 6.585 15 C -0.537 4.537 16 H 0.060 0.940 17 C 0.069 3.931 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.050 3.950 24 C -0.155 4.155 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.032 0.968 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.378 0.622 40 H 0.266 0.734 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.223 15.260 9.684 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.050 4.050 3 C -0.187 4.187 4 C -0.096 4.096 5 C -0.239 4.239 6 C 0.097 3.903 7 O -0.204 6.204 8 C -0.007 4.007 9 C -0.086 4.086 10 N -0.226 5.226 11 C -0.098 4.098 12 C -0.157 4.157 13 C 0.213 3.787 14 O -0.393 6.393 15 C -0.575 4.575 16 H 0.078 0.922 17 C -0.133 4.133 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.077 4.077 24 C -0.174 4.174 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.228 0.772 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.032 15.167 10.087 19.525 hybrid contribution 2.205 -0.463 -0.795 2.390 sum -4.826 14.704 9.291 18.051 Atomic orbital electron populations 1.20802 0.90927 1.02782 1.02561 1.19692 0.95943 0.92327 0.97019 1.20860 0.94124 0.97358 1.06341 1.20879 0.94167 0.97248 0.97296 1.21251 1.00213 0.92378 1.10103 1.19117 0.91955 0.85166 0.94076 1.86248 1.19899 1.26870 1.87424 1.22863 0.78567 0.98564 1.00668 1.22294 0.97458 0.93352 0.95540 1.65524 1.52757 1.03192 1.01141 1.23193 0.94822 0.98603 0.93227 1.22831 1.01793 0.94944 0.96158 1.19200 0.83288 0.88718 0.87479 1.86145 1.40060 1.81294 1.31808 1.21756 1.12397 1.29845 0.93541 0.92202 1.25009 0.96643 0.95739 0.95934 1.69726 1.39004 1.44694 0.99863 0.86439 0.82161 0.80543 0.78242 1.19756 1.20789 1.20939 1.23126 0.97739 0.87563 0.99243 1.20338 0.91118 0.98648 1.07308 0.90898 0.91315 0.91516 0.86301 0.86121 0.85732 0.92237 0.91994 0.90034 0.92838 0.94996 0.92063 0.92696 0.91107 0.77191 0.92394 0.90875 0.93722 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.05 -0.56 5.88 -104.64 -0.62 -1.18 16 3 C -0.17 -1.78 9.70 -39.56 -0.38 -2.16 16 4 C -0.08 -0.84 10.04 -39.60 -0.40 -1.24 16 5 C -0.22 -2.73 9.04 -39.44 -0.36 -3.09 16 6 C 0.14 2.06 6.69 -39.22 -0.26 1.80 16 7 O -0.29 -4.69 10.08 -19.42 -0.20 -4.89 16 8 C 0.07 0.95 4.88 37.16 0.18 1.13 16 9 C 0.04 0.66 5.21 -3.83 -0.02 0.64 16 10 N -0.50 -9.94 5.33 -229.70 -1.22 -11.16 16 11 C 0.03 0.58 5.73 -2.18 -0.01 0.57 16 12 C -0.12 -2.81 5.55 -25.35 -0.14 -2.95 16 13 C 0.25 6.42 1.06 -90.39 -0.10 6.32 16 14 O -0.58 -15.86 12.94 -35.23 -0.46 -16.31 16 15 C -0.54 -14.43 8.08 -34.44 -0.28 -14.71 16 16 H 0.06 1.60 7.58 -52.49 -0.40 1.20 16 17 C 0.07 1.83 5.02 -17.82 -0.09 1.74 16 18 N -0.89 -24.02 10.81 55.43 0.60 -23.42 16 19 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.05 1.12 5.77 -2.01 -0.01 1.10 16 24 C -0.16 -2.08 9.64 -39.43 -0.38 -2.46 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 27 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 30 H 0.12 1.36 6.30 -52.49 -0.33 1.03 16 31 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 32 H 0.06 0.84 6.57 -51.93 -0.34 0.50 16 33 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 34 H 0.05 0.76 7.88 -51.93 -0.41 0.35 16 35 H 0.03 0.59 7.82 -51.93 -0.41 0.18 16 36 H 0.06 1.14 7.63 -51.93 -0.40 0.74 16 37 H 0.05 1.35 7.98 -51.93 -0.41 0.94 16 38 H 0.07 1.78 7.24 -51.93 -0.38 1.40 16 39 H 0.38 10.32 7.32 45.56 0.33 10.65 16 40 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.07 1.65 8.08 -51.93 -0.42 1.23 16 42 H 0.04 0.95 7.57 -51.93 -0.39 0.55 16 43 H 0.13 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 346.88 15.07 5.23 5.23 Total: -1.00 -29.35 346.88 -9.61 -38.95 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -6.04 Total: 11.05 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -2.50 Total: -15.06 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: -0.62 Total: -34.58 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.65 Total: -21.20 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.35 -9.61 -38.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.972 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds