Wall clock time and date at job start Tue Mar 31 2020 06:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38287 * 119.97253 * 2 1 4 4 C 1.38245 * 120.11458 * 180.02562 * 3 2 1 5 5 C 1.38169 * 120.05206 * 359.97438 * 4 3 2 6 6 C 1.38701 * 119.94593 * 0.02562 * 5 4 3 7 7 O 1.35898 * 120.05861 * 180.02562 * 6 5 4 8 8 C 1.42905 * 116.99851 * 0.02562 * 7 6 5 9 9 C 1.53003 * 109.46980 * 179.97438 * 8 7 6 10 10 N 1.46894 * 109.47052 * 65.00094 * 9 8 7 11 11 C 1.48562 * 111.00344 * 69.87193 * 10 9 8 12 12 C 1.54379 * 104.69842 * 159.09785 * 11 10 9 13 13 C 1.54257 * 105.06256 * 336.08765 * 12 11 10 14 14 O 1.42901 * 110.32530 * 118.99711 * 13 12 11 15 15 C 1.50699 * 110.32398 * 241.10546 * 13 12 11 16 16 H 1.07999 * 120.00074 * 118.54876 * 15 13 12 17 17 C 1.37874 * 120.00225 * 298.54451 * 15 13 12 18 18 N 1.31516 * 119.99741 * 0.02562 * 17 15 13 19 19 Si 1.86792 * 120.00595 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46923 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47381 * 119.99869 * 19 17 15 22 22 H 1.48500 * 109.47425 * 240.00505 * 19 17 15 23 23 C 1.48856 * 111.13147 * 185.19313 * 10 9 8 24 24 C 1.38128 * 119.97404 * 180.26222 * 2 1 3 25 25 H 1.08999 * 109.47317 * 89.99681 * 1 2 3 26 26 H 1.09000 * 109.46975 * 210.00148 * 1 2 3 27 27 H 1.09006 * 109.46803 * 329.99220 * 1 2 3 28 28 H 1.08001 * 119.94590 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.97621 * 180.02562 * 4 3 2 30 30 H 1.08001 * 120.02644 * 179.97438 * 5 4 3 31 31 H 1.08994 * 109.46983 * 59.99494 * 8 7 6 32 32 H 1.08998 * 109.46470 * 300.00069 * 8 7 6 33 33 H 1.09001 * 109.46965 * 304.99746 * 9 8 7 34 34 H 1.09003 * 109.46723 * 184.99569 * 9 8 7 35 35 H 1.09002 * 110.41176 * 40.25880 * 11 10 9 36 36 H 1.09002 * 110.41204 * 277.93787 * 11 10 9 37 37 H 1.08998 * 110.32365 * 94.98307 * 12 11 10 38 38 H 1.08997 * 110.32065 * 217.08696 * 12 11 10 39 39 H 0.96704 * 113.99873 * 61.45149 * 14 13 12 40 40 H 0.97003 * 119.99972 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.39541 * 82.21242 * 23 10 9 42 42 H 1.09004 * 110.49212 * 319.84370 * 23 10 9 43 43 H 1.08004 * 120.02412 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2014 -0.0005 5 6 4.2752 0.0071 -0.0005 6 6 3.5846 -1.1957 -0.0005 7 8 4.2658 -2.3717 0.0000 8 6 5.6928 -2.2948 0.0011 9 6 6.2796 -3.7079 0.0022 10 7 5.9279 -4.3851 -1.2530 11 6 6.6562 -3.7884 -2.4022 12 6 6.6272 -4.8799 -3.4936 13 6 6.4414 -6.2066 -2.7289 14 8 5.2266 -6.8441 -3.1289 15 6 7.6153 -7.1197 -2.9720 16 1 8.2343 -7.4353 -2.1452 17 6 7.8991 -7.5524 -4.2500 18 7 7.1456 -7.1678 -5.2569 19 14 9.3538 -8.6848 -4.5513 20 1 10.0357 -8.9682 -3.2629 21 1 8.8750 -9.9577 -5.1478 22 1 10.3068 -8.0293 -5.4826 23 6 6.3737 -5.8052 -1.2397 24 6 2.1971 -1.1965 -0.0055 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5140 28 1 1.6565 2.1325 0.0004 29 1 4.1176 2.1382 -0.0001 30 1 5.3552 0.0103 -0.0014 31 1 6.0272 -1.7622 0.8912 32 1 6.0285 -1.7622 -0.8886 33 1 5.8739 -4.2691 0.8440 34 1 7.3644 -3.6506 0.0925 35 1 7.6841 -3.5578 -2.1224 36 1 6.1469 -2.8896 -2.7497 37 1 5.7910 -4.7140 -4.1727 38 1 7.5668 -4.8879 -4.0460 39 1 5.1958 -7.0788 -4.0665 40 1 7.3450 -7.4725 -6.1560 41 1 5.6499 -6.4257 -0.7113 42 1 7.3570 -5.8922 -0.7775 43 1 1.6570 -2.1318 -0.0102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:07 Heat of formation + Delta-G solvation = -81.535302 kcal Electronic energy + Delta-G solvation = -23106.170567 eV Core-core repulsion = 19729.478971 eV Total energy + Delta-G solvation = -3376.691597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.10132 -40.05019 -38.55836 -36.64646 -34.17657 -33.38459 -32.84204 -30.94828 -29.83174 -29.02432 -27.78644 -26.26196 -24.10558 -23.40156 -22.30835 -21.37300 -21.12622 -19.00081 -18.77026 -17.38447 -17.07417 -16.98967 -16.80400 -16.54261 -15.72261 -15.59170 -15.22580 -15.00628 -14.69373 -14.44381 -14.24632 -14.10432 -14.05235 -13.31499 -13.23178 -13.16848 -12.97896 -12.88055 -12.74273 -12.49727 -12.36730 -12.27924 -12.18139 -12.11144 -11.77682 -11.66823 -11.55001 -11.04432 -10.60911 -10.10982 -9.70281 -9.32346 -9.06768 -8.21592 -6.38509 0.40136 0.54986 1.38760 1.42135 1.52580 2.31240 2.37556 2.84447 3.03142 3.09465 3.77993 3.92608 3.95035 4.02289 4.04891 4.18787 4.21132 4.30094 4.34259 4.41903 4.46348 4.48494 4.58111 4.60987 4.71385 4.80093 4.84746 4.88094 4.90488 5.05669 5.13779 5.19667 5.26803 5.43218 5.44858 5.53060 5.58027 5.68805 5.70713 5.83611 5.93814 6.17187 6.26909 6.58973 6.69034 7.33458 7.47532 8.83889 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032142 B = 0.003036 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.937921 B = 9221.165347 C = 9488.309932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.055 4.055 3 C -0.169 4.169 4 C -0.079 4.079 5 C -0.228 4.228 6 C 0.116 3.884 7 O -0.322 6.322 8 C 0.071 3.929 9 C 0.041 3.959 10 N -0.515 5.515 11 C 0.042 3.958 12 C -0.111 4.111 13 C 0.234 3.766 14 O -0.598 6.598 15 C -0.560 4.560 16 H 0.056 0.944 17 C 0.027 3.973 18 N -0.912 5.912 19 Si 0.962 3.038 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.277 1.277 23 C 0.059 3.941 24 C -0.181 4.181 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.050 0.950 39 H 0.372 0.628 40 H 0.269 0.731 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 17.297 10.621 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.187 4.187 4 C -0.097 4.097 5 C -0.247 4.247 6 C 0.070 3.930 7 O -0.236 6.236 8 C -0.004 4.004 9 C -0.087 4.087 10 N -0.240 5.240 11 C -0.086 4.086 12 C -0.150 4.150 13 C 0.195 3.805 14 O -0.406 6.406 15 C -0.598 4.598 16 H 0.074 0.926 17 C -0.174 4.174 18 N -0.552 5.552 19 Si 0.787 3.213 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.203 1.203 23 C -0.069 4.069 24 C -0.200 4.200 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.165 0.835 29 H 0.168 0.832 30 H 0.156 0.844 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.221 0.779 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.429 17.222 11.039 21.443 hybrid contribution 1.945 -1.045 -1.079 2.457 sum -4.484 16.177 9.961 19.519 Atomic orbital electron populations 1.20863 0.89020 1.03859 1.03239 1.20055 0.97468 0.91907 0.96038 1.21266 0.94400 0.98109 1.04927 1.21284 0.94572 0.97850 0.95983 1.21465 1.01005 0.92178 1.10045 1.19386 0.92364 0.85423 0.95828 1.86189 1.20928 1.28310 1.88150 1.22897 0.77865 0.97421 1.02178 1.22426 0.98962 0.94087 0.93272 1.65461 1.53272 1.02123 1.03101 1.23064 0.96144 0.97437 0.91974 1.22621 0.99702 0.95926 0.96751 1.19529 0.82261 0.89061 0.89695 1.86141 1.41328 1.81734 1.31349 1.21991 1.13147 1.30827 0.93830 0.92597 1.25731 0.99035 0.96934 0.95665 1.69818 1.40045 1.45165 1.00123 0.85456 0.79145 0.78554 0.78113 1.19414 1.20647 1.20274 1.22947 0.97929 0.89141 0.96880 1.20520 0.91306 0.99315 1.08883 0.90298 0.91265 0.89467 0.83506 0.83241 0.84439 0.89185 0.91876 0.89769 0.90734 0.93181 0.90757 0.94745 0.93087 0.77901 0.92200 0.91961 0.92841 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.01 71.24 0.71 -0.98 16 2 C -0.05 -1.16 5.88 -19.88 -0.12 -1.28 16 3 C -0.17 -3.11 9.70 22.28 0.22 -2.90 16 4 C -0.08 -1.49 10.04 22.25 0.22 -1.27 16 5 C -0.23 -5.25 9.04 22.36 0.20 -5.05 16 6 C 0.12 3.29 6.69 22.50 0.15 3.44 16 7 O -0.32 -10.28 10.08 -92.40 -0.93 -11.22 16 8 C 0.07 1.84 4.88 71.98 0.35 2.19 16 9 C 0.04 1.19 5.21 86.31 0.45 1.64 16 10 N -0.51 -20.09 5.33 -880.65 -4.69 -24.78 16 11 C 0.04 1.61 5.73 86.45 0.50 2.10 16 12 C -0.11 -5.36 5.55 31.49 0.17 -5.18 16 13 C 0.23 12.09 1.06 -10.65 -0.01 12.08 16 14 O -0.60 -33.47 12.94 -148.98 -1.93 -35.40 16 15 C -0.56 -30.43 8.08 25.60 0.21 -30.23 16 16 H 0.06 3.00 7.58 -2.91 -0.02 2.98 16 17 C 0.03 1.43 5.02 84.65 0.43 1.85 16 18 N -0.91 -49.78 10.81 21.45 0.23 -49.55 16 19 Si 0.96 42.36 29.54 68.60 2.03 44.38 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 23 C 0.06 2.60 5.77 86.39 0.50 3.10 16 24 C -0.18 -4.90 9.64 22.37 0.22 -4.69 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 27 H 0.09 0.94 8.09 -2.38 -0.02 0.92 16 28 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 29 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.14 2.67 6.30 -2.91 -0.02 2.65 16 31 H 0.09 1.75 7.66 -2.39 -0.02 1.74 16 32 H 0.06 1.59 6.57 -2.39 -0.02 1.58 16 33 H 0.08 2.42 8.13 -2.39 -0.02 2.40 16 34 H 0.07 1.90 7.88 -2.39 -0.02 1.88 16 35 H 0.05 1.75 7.82 -2.39 -0.02 1.74 16 36 H 0.07 2.68 7.63 -2.39 -0.02 2.67 16 37 H 0.03 1.74 7.98 -2.39 -0.02 1.72 16 38 H 0.05 2.61 7.24 -2.39 -0.02 2.59 16 39 H 0.37 21.15 7.32 -74.05 -0.54 20.60 16 40 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 41 H 0.06 2.85 8.08 -2.39 -0.02 2.83 16 42 H 0.05 2.24 7.57 -2.39 -0.02 2.22 16 43 H 0.12 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -64.02 346.88 -0.64 -64.66 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: 0.46 Total: 37.06 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 4.19 Total: -25.16 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -4.46 Total: -74.33 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -2.86 Total: -46.61 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -64.02 -0.64 -64.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.874 kcal (2) G-P(sol) polarization free energy of solvation -64.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds