Wall clock time and date at job start Tue Mar 31 2020 06:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38297 * 119.97130 * 2 1 4 4 C 1.38236 * 120.11347 * 180.02562 * 3 2 1 5 5 C 1.38172 * 120.05656 * 359.67737 * 4 3 2 6 6 C 1.38714 * 119.94008 * 0.57845 * 5 4 3 7 7 O 1.35895 * 120.05575 * 179.71763 * 6 5 4 8 8 C 1.42907 * 117.00230 * 359.72489 * 7 6 5 9 9 C 1.52999 * 109.47355 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.46697 * 65.00417 * 9 8 7 11 11 C 1.48720 * 111.01831 * 74.48907 * 10 9 8 12 12 C 1.54381 * 104.51692 * 158.96284 * 11 10 9 13 13 C 1.54257 * 105.14978 * 336.27274 * 12 11 10 14 14 O 1.42906 * 110.32239 * 240.94794 * 13 12 11 15 15 C 1.50697 * 110.32628 * 118.84329 * 13 12 11 16 16 H 1.07995 * 120.00073 * 241.44522 * 15 13 12 17 17 C 1.37883 * 119.99811 * 61.45328 * 15 13 12 18 18 N 1.31514 * 119.99933 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 119.99722 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.46935 * 90.00162 * 19 17 15 21 21 H 1.48500 * 109.47103 * 209.99421 * 19 17 15 22 22 H 1.48498 * 109.47343 * 330.00155 * 19 17 15 23 23 C 1.48567 * 110.99718 * 189.99889 * 10 9 8 24 24 C 1.38119 * 119.97534 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47186 * 270.01982 * 1 2 3 26 26 H 1.08993 * 109.47259 * 30.02462 * 1 2 3 27 27 H 1.09005 * 109.46675 * 150.02026 * 1 2 3 28 28 H 1.07996 * 119.94215 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.97742 * 179.97438 * 4 3 2 30 30 H 1.07996 * 120.02993 * 180.29475 * 5 4 3 31 31 H 1.08998 * 109.46823 * 59.99752 * 8 7 6 32 32 H 1.08995 * 109.46883 * 300.00163 * 8 7 6 33 33 H 1.08997 * 109.47422 * 304.99884 * 9 8 7 34 34 H 1.08999 * 109.46632 * 184.99889 * 9 8 7 35 35 H 1.09004 * 110.38960 * 40.24251 * 11 10 9 36 36 H 1.08996 * 110.50963 * 277.74694 * 11 10 9 37 37 H 1.09002 * 110.32526 * 217.32092 * 12 11 10 38 38 H 1.08998 * 110.32190 * 95.21733 * 12 11 10 39 39 H 0.96695 * 113.99929 * 298.55053 * 14 13 12 40 40 H 0.97002 * 119.99478 * 180.02562 * 18 17 15 41 41 H 1.08999 * 110.41133 * 82.17552 * 23 10 9 42 42 H 1.09001 * 110.41003 * 319.73948 * 23 10 9 43 43 H 1.08003 * 120.02955 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2015 -0.0005 5 6 4.2752 0.0073 0.0057 6 6 3.5846 -1.1957 0.0003 7 8 4.2658 -2.3716 0.0006 8 6 5.6928 -2.2947 0.0004 9 6 6.2797 -3.7077 0.0014 10 7 5.9269 -4.3852 -1.2534 11 6 6.7359 -3.8635 -2.3870 12 6 6.6703 -4.9772 -3.4541 13 6 6.3627 -6.2694 -2.6697 14 8 7.4181 -7.2174 -2.8416 15 6 5.0522 -6.8583 -3.1245 16 1 4.2360 -6.9638 -2.4252 17 6 4.8953 -7.2624 -4.4334 18 7 5.8894 -7.1344 -5.2848 19 14 3.2711 -7.9930 -4.9968 20 1 2.3834 -6.9077 -5.4862 21 1 3.5186 -8.9626 -6.0941 22 1 2.6200 -8.6894 -3.8583 23 6 6.2692 -5.8297 -1.1929 24 6 2.1970 -1.1964 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5136 28 1 1.6564 2.1325 0.0004 29 1 4.1175 2.1383 -0.0010 30 1 5.3551 0.0105 0.0101 31 1 6.0280 -1.7618 0.8902 32 1 6.0279 -1.7624 -0.8897 33 1 5.8748 -4.2687 0.8437 34 1 7.3645 -3.6504 0.0909 35 1 7.7667 -3.6977 -2.0734 36 1 6.3021 -2.9411 -2.7730 37 1 7.6272 -5.0653 -3.9686 38 1 5.8743 -4.7698 -4.1692 39 1 7.5514 -7.4958 -3.7579 40 1 5.7788 -7.4184 -6.2057 41 1 5.4843 -6.3852 -0.6797 42 1 7.2268 -5.9728 -0.6922 43 1 1.6571 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:11 Heat of formation + Delta-G solvation = -60.442202 kcal Electronic energy + Delta-G solvation = -23247.359662 eV Core-core repulsion = 19871.582731 eV Total energy + Delta-G solvation = -3375.776931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.08064 -38.46902 -37.44471 -34.90370 -32.54404 -32.05585 -31.45136 -29.78095 -28.17349 -27.39419 -26.87950 -24.42831 -22.80701 -22.45069 -21.05648 -19.94682 -19.37014 -17.77411 -16.97599 -16.12980 -15.99479 -15.85723 -14.95677 -14.78654 -14.52086 -14.27898 -13.91787 -13.70398 -13.51484 -13.22722 -13.06301 -12.64616 -12.35345 -12.19744 -12.04408 -11.73364 -11.66779 -11.51305 -11.18457 -11.03022 -10.96193 -10.73536 -10.57198 -10.46480 -10.36253 -10.26285 -9.88012 -9.00544 -8.80286 -8.52023 -8.11020 -8.08046 -7.80270 -6.11771 -4.16640 1.30339 1.48565 3.30392 3.33804 3.36638 3.41533 3.75771 4.39855 4.45739 4.75799 4.77458 5.03099 5.08295 5.14613 5.18212 5.24155 5.31394 5.37271 5.47680 5.51142 5.60229 5.66636 5.74886 5.84706 5.87895 5.99270 6.06102 6.15511 6.21148 6.34951 6.37435 6.42266 6.53117 6.56519 6.80515 6.89713 7.07913 7.24204 7.53630 7.61922 7.69213 7.73607 7.90620 8.26851 8.86002 9.46730 9.55596 10.95882 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.003941 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.534667 B = 7103.576424 C = 8239.163925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.049 4.049 3 C -0.169 4.169 4 C -0.078 4.078 5 C -0.221 4.221 6 C 0.144 3.856 7 O -0.291 6.291 8 C 0.071 3.929 9 C 0.043 3.957 10 N -0.492 5.492 11 C 0.030 3.970 12 C -0.120 4.120 13 C 0.249 3.751 14 O -0.595 6.595 15 C -0.516 4.516 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.902 5.902 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.053 3.947 24 C -0.155 4.155 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.028 0.972 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.382 0.618 40 H 0.265 0.735 41 H 0.078 0.922 42 H 0.030 0.970 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 15.110 9.981 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.049 4.049 3 C -0.187 4.187 4 C -0.096 4.096 5 C -0.240 4.240 6 C 0.098 3.902 7 O -0.203 6.203 8 C -0.005 4.005 9 C -0.086 4.086 10 N -0.217 5.217 11 C -0.098 4.098 12 C -0.158 4.158 13 C 0.209 3.791 14 O -0.404 6.404 15 C -0.555 4.555 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.543 5.543 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.074 4.074 24 C -0.174 4.174 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.233 0.767 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.884 15.016 10.374 18.660 hybrid contribution 0.258 -0.243 -0.940 1.005 sum -3.626 14.773 9.434 17.899 Atomic orbital electron populations 1.20802 0.90952 1.02984 1.02364 1.19687 0.95933 0.92322 0.96998 1.20857 0.94129 0.97350 1.06395 1.20869 0.94162 0.97231 0.97359 1.21246 1.00175 0.92381 1.10194 1.19112 0.91947 0.85151 0.94003 1.86252 1.19834 1.26845 1.87392 1.22830 0.78645 0.98452 1.00584 1.22305 0.97359 0.93551 0.95421 1.65365 1.51352 1.03316 1.01653 1.23242 0.93787 0.99319 0.93470 1.22841 1.00938 0.95188 0.96882 1.19245 0.86223 0.85361 0.88233 1.86078 1.56208 1.64072 1.34077 1.21652 0.98274 1.40199 0.95336 0.91945 1.24999 0.96983 0.95125 0.96455 1.69697 1.31499 1.48288 1.04785 0.86475 0.83637 0.78917 0.78258 1.20610 1.21280 1.19810 1.22988 0.98102 0.87391 0.98913 1.20347 0.91144 0.98669 1.07209 0.91059 0.91474 0.91199 0.86326 0.86155 0.85757 0.92280 0.92026 0.90011 0.92924 0.95411 0.91774 0.93117 0.90615 0.76733 0.92537 0.90395 0.95175 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 36.00 0.36 -0.65 16 2 C -0.05 -0.58 5.88 -104.65 -0.62 -1.19 16 3 C -0.17 -1.84 9.70 -39.56 -0.38 -2.22 16 4 C -0.08 -0.86 10.04 -39.61 -0.40 -1.26 16 5 C -0.22 -2.79 9.04 -39.43 -0.36 -3.14 16 6 C 0.14 2.13 6.69 -39.21 -0.26 1.86 16 7 O -0.29 -4.76 10.08 -19.41 -0.20 -4.95 16 8 C 0.07 0.97 4.93 37.16 0.18 1.16 16 9 C 0.04 0.66 5.22 -3.82 -0.02 0.64 16 10 N -0.49 -9.77 5.28 -229.83 -1.21 -10.99 16 11 C 0.03 0.58 5.92 -2.09 -0.01 0.57 16 12 C -0.12 -2.83 5.55 -25.35 -0.14 -2.97 16 13 C 0.25 6.32 1.05 -90.39 -0.10 6.22 16 14 O -0.60 -15.69 12.94 -35.23 -0.46 -16.14 16 15 C -0.52 -14.26 8.10 -34.44 -0.28 -14.54 16 16 H 0.06 1.75 7.53 -52.49 -0.40 1.36 16 17 C 0.07 1.77 5.02 -17.82 -0.09 1.68 16 18 N -0.90 -24.57 10.81 55.43 0.60 -23.97 16 19 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.05 1.18 5.74 -2.18 -0.01 1.17 16 24 C -0.16 -2.15 9.64 -39.43 -0.38 -2.53 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.12 1.37 6.30 -52.49 -0.33 1.04 16 31 H 0.06 0.65 7.65 -51.93 -0.40 0.26 16 32 H 0.06 0.84 6.82 -51.93 -0.35 0.49 16 33 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 34 H 0.05 0.73 7.77 -51.93 -0.40 0.33 16 35 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 36 H 0.06 1.20 7.74 -51.93 -0.40 0.79 16 37 H 0.05 1.20 7.98 -51.93 -0.41 0.78 16 38 H 0.08 1.98 7.23 -51.93 -0.38 1.60 16 39 H 0.38 10.17 7.32 45.56 0.33 10.51 16 40 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.08 1.75 7.67 -51.93 -0.40 1.35 16 42 H 0.03 0.64 7.94 -51.93 -0.41 0.22 16 43 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 347.08 15.07 5.23 5.23 Total: -1.00 -29.61 347.08 -9.60 -39.21 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -6.04 Total: 10.45 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -2.50 Total: -15.20 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.62 Total: -34.96 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.65 Total: -21.10 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.61 -9.60 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.231 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds