Wall clock time and date at job start Tue Mar 31 2020 06:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38297 * 119.97130 * 2 1 4 4 C 1.38236 * 120.11347 * 180.02562 * 3 2 1 5 5 C 1.38172 * 120.05656 * 359.67737 * 4 3 2 6 6 C 1.38714 * 119.94008 * 0.57845 * 5 4 3 7 7 O 1.35895 * 120.05575 * 179.71763 * 6 5 4 8 8 C 1.42907 * 117.00230 * 359.72489 * 7 6 5 9 9 C 1.52999 * 109.47355 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.46697 * 65.00417 * 9 8 7 11 11 C 1.48720 * 111.01831 * 74.48907 * 10 9 8 12 12 C 1.54381 * 104.51692 * 158.96284 * 11 10 9 13 13 C 1.54257 * 105.14978 * 336.27274 * 12 11 10 14 14 O 1.42906 * 110.32239 * 240.94794 * 13 12 11 15 15 C 1.50697 * 110.32628 * 118.84329 * 13 12 11 16 16 H 1.07995 * 120.00073 * 241.44522 * 15 13 12 17 17 C 1.37883 * 119.99811 * 61.45328 * 15 13 12 18 18 N 1.31514 * 119.99933 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 119.99722 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.46935 * 90.00162 * 19 17 15 21 21 H 1.48500 * 109.47103 * 209.99421 * 19 17 15 22 22 H 1.48498 * 109.47343 * 330.00155 * 19 17 15 23 23 C 1.48567 * 110.99718 * 189.99889 * 10 9 8 24 24 C 1.38119 * 119.97534 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47186 * 270.01982 * 1 2 3 26 26 H 1.08993 * 109.47259 * 30.02462 * 1 2 3 27 27 H 1.09005 * 109.46675 * 150.02026 * 1 2 3 28 28 H 1.07996 * 119.94215 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.97742 * 179.97438 * 4 3 2 30 30 H 1.07996 * 120.02993 * 180.29475 * 5 4 3 31 31 H 1.08998 * 109.46823 * 59.99752 * 8 7 6 32 32 H 1.08995 * 109.46883 * 300.00163 * 8 7 6 33 33 H 1.08997 * 109.47422 * 304.99884 * 9 8 7 34 34 H 1.08999 * 109.46632 * 184.99889 * 9 8 7 35 35 H 1.09004 * 110.38960 * 40.24251 * 11 10 9 36 36 H 1.08996 * 110.50963 * 277.74694 * 11 10 9 37 37 H 1.09002 * 110.32526 * 217.32092 * 12 11 10 38 38 H 1.08998 * 110.32190 * 95.21733 * 12 11 10 39 39 H 0.96695 * 113.99929 * 298.55053 * 14 13 12 40 40 H 0.97002 * 119.99478 * 180.02562 * 18 17 15 41 41 H 1.08999 * 110.41133 * 82.17552 * 23 10 9 42 42 H 1.09001 * 110.41003 * 319.73948 * 23 10 9 43 43 H 1.08003 * 120.02955 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2015 -0.0005 5 6 4.2752 0.0073 0.0057 6 6 3.5846 -1.1957 0.0003 7 8 4.2658 -2.3716 0.0006 8 6 5.6928 -2.2947 0.0004 9 6 6.2797 -3.7077 0.0014 10 7 5.9269 -4.3852 -1.2534 11 6 6.7359 -3.8635 -2.3870 12 6 6.6703 -4.9772 -3.4541 13 6 6.3627 -6.2694 -2.6697 14 8 7.4181 -7.2174 -2.8416 15 6 5.0522 -6.8583 -3.1245 16 1 4.2360 -6.9638 -2.4252 17 6 4.8953 -7.2624 -4.4334 18 7 5.8894 -7.1344 -5.2848 19 14 3.2711 -7.9930 -4.9968 20 1 2.3834 -6.9077 -5.4862 21 1 3.5186 -8.9626 -6.0941 22 1 2.6200 -8.6894 -3.8583 23 6 6.2692 -5.8297 -1.1929 24 6 2.1970 -1.1964 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5136 28 1 1.6564 2.1325 0.0004 29 1 4.1175 2.1383 -0.0010 30 1 5.3551 0.0105 0.0101 31 1 6.0280 -1.7618 0.8902 32 1 6.0279 -1.7624 -0.8897 33 1 5.8748 -4.2687 0.8437 34 1 7.3645 -3.6504 0.0909 35 1 7.7667 -3.6977 -2.0734 36 1 6.3021 -2.9411 -2.7730 37 1 7.6272 -5.0653 -3.9686 38 1 5.8743 -4.7698 -4.1692 39 1 7.5514 -7.4958 -3.7579 40 1 5.7788 -7.4184 -6.2057 41 1 5.4843 -6.3852 -0.6797 42 1 7.2268 -5.9728 -0.6922 43 1 1.6571 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:10 Heat of formation + Delta-G solvation = -80.327296 kcal Electronic energy + Delta-G solvation = -23248.221945 eV Core-core repulsion = 19871.582731 eV Total energy + Delta-G solvation = -3376.639214 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.08861 -40.06637 -38.55591 -36.68952 -34.16175 -33.38526 -32.84746 -30.93284 -29.85915 -28.92588 -27.78191 -26.31603 -24.07248 -23.39804 -22.29754 -21.40044 -21.13099 -19.04604 -18.75763 -17.41012 -17.01355 -16.88947 -16.81771 -16.36835 -16.11283 -15.61966 -15.22469 -15.00132 -14.49161 -14.42067 -14.20537 -14.09642 -13.99251 -13.48972 -13.40394 -13.04626 -12.99856 -12.89372 -12.73292 -12.46602 -12.38372 -12.32114 -12.13320 -12.06701 -11.89862 -11.63404 -11.57425 -10.94640 -10.60566 -10.13425 -9.70108 -9.31778 -9.06017 -8.19860 -6.31945 0.40392 0.55485 1.39282 1.40801 1.50808 2.32755 2.40291 2.84697 2.93283 3.13955 3.80678 3.91266 3.95067 4.01265 4.15400 4.18943 4.22495 4.29562 4.33240 4.41420 4.46161 4.50964 4.55479 4.60473 4.64364 4.79504 4.84012 4.84505 4.90194 5.04145 5.05986 5.23418 5.26422 5.36308 5.43567 5.53157 5.65143 5.68997 5.77140 5.93136 5.97727 6.16913 6.25868 6.60464 6.72289 7.35973 7.43975 8.86043 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.003941 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.534667 B = 7103.576424 C = 8239.163925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.054 4.054 3 C -0.170 4.170 4 C -0.079 4.079 5 C -0.228 4.228 6 C 0.117 3.883 7 O -0.322 6.322 8 C 0.072 3.928 9 C 0.041 3.959 10 N -0.508 5.508 11 C 0.041 3.959 12 C -0.113 4.113 13 C 0.232 3.768 14 O -0.601 6.601 15 C -0.543 4.543 16 H 0.047 0.953 17 C 0.027 3.973 18 N -0.914 5.914 19 Si 0.955 3.045 20 H -0.278 1.278 21 H -0.278 1.278 22 H -0.274 1.274 23 C 0.063 3.937 24 C -0.183 4.183 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.147 0.853 29 H 0.151 0.849 30 H 0.139 0.861 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.377 0.623 40 H 0.268 0.732 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 17.379 10.725 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.188 4.188 4 C -0.096 4.096 5 C -0.247 4.247 6 C 0.071 3.929 7 O -0.236 6.236 8 C -0.003 4.003 9 C -0.087 4.087 10 N -0.233 5.233 11 C -0.086 4.086 12 C -0.152 4.152 13 C 0.192 3.808 14 O -0.410 6.410 15 C -0.581 4.581 16 H 0.065 0.935 17 C -0.173 4.173 18 N -0.555 5.555 19 Si 0.781 3.219 20 H -0.204 1.204 21 H -0.203 1.203 22 H -0.199 1.199 23 C -0.065 4.065 24 C -0.202 4.202 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.165 0.835 29 H 0.168 0.832 30 H 0.157 0.843 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.226 0.774 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.059 17.298 11.129 20.966 hybrid contribution 0.287 -0.905 -1.157 1.497 sum -3.771 16.394 9.971 19.555 Atomic orbital electron populations 1.20861 0.89116 1.03646 1.03382 1.20042 0.97416 0.91930 0.96063 1.21262 0.94452 0.98054 1.05023 1.21286 0.94527 0.97884 0.95946 1.21472 1.01041 0.92109 1.10049 1.19380 0.92313 0.85476 0.95695 1.86194 1.21023 1.28286 1.88098 1.22892 0.77804 0.97437 1.02149 1.22439 0.99014 0.94144 0.93097 1.65304 1.52145 1.02125 1.03773 1.23124 0.95326 0.97965 0.92216 1.22618 0.99166 0.96149 0.97234 1.19496 0.85079 0.85583 0.90597 1.86069 1.56567 1.64659 1.33663 1.21859 0.99096 1.41433 0.95689 0.93457 1.25636 0.99869 0.95331 0.96442 1.69767 1.32613 1.48207 1.04912 0.85603 0.80163 0.78267 0.77835 1.20439 1.20293 1.19891 1.22781 0.98138 0.89011 0.96599 1.20517 0.91416 0.99264 1.08985 0.89779 0.89667 0.91682 0.83511 0.83166 0.84298 0.89119 0.91875 0.89845 0.90512 0.92998 0.90675 0.93754 0.93857 0.77364 0.92304 0.91651 0.94169 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 10.01 71.23 0.71 -1.11 16 2 C -0.05 -1.21 5.88 -19.88 -0.12 -1.32 16 3 C -0.17 -3.24 9.70 22.28 0.22 -3.03 16 4 C -0.08 -1.52 10.04 22.25 0.22 -1.29 16 5 C -0.23 -5.33 9.04 22.37 0.20 -5.12 16 6 C 0.12 3.41 6.69 22.51 0.15 3.56 16 7 O -0.32 -10.50 10.08 -92.37 -0.93 -11.43 16 8 C 0.07 1.86 4.93 71.98 0.35 2.22 16 9 C 0.04 1.20 5.22 86.30 0.45 1.65 16 10 N -0.51 -19.86 5.28 -881.04 -4.66 -24.52 16 11 C 0.04 1.58 5.92 86.42 0.51 2.09 16 12 C -0.11 -5.41 5.55 31.49 0.17 -5.23 16 13 C 0.23 11.96 1.05 -10.65 -0.01 11.95 16 14 O -0.60 -32.19 12.94 -148.98 -1.93 -34.12 16 15 C -0.54 -30.74 8.10 25.60 0.21 -30.53 16 16 H 0.05 2.75 7.53 -2.91 -0.02 2.72 16 17 C 0.03 1.48 5.02 84.66 0.43 1.90 16 18 N -0.91 -50.52 10.81 21.45 0.23 -50.28 16 19 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 23 C 0.06 2.78 5.74 86.45 0.50 3.27 16 24 C -0.18 -5.14 9.64 22.37 0.22 -4.92 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 27 H 0.06 1.09 8.08 -2.38 -0.02 1.07 16 28 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 29 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 30 H 0.14 2.70 6.30 -2.91 -0.02 2.68 16 31 H 0.09 1.75 7.65 -2.39 -0.02 1.73 16 32 H 0.06 1.59 6.82 -2.39 -0.02 1.57 16 33 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 34 H 0.08 1.89 7.77 -2.39 -0.02 1.87 16 35 H 0.05 1.74 7.75 -2.38 -0.02 1.72 16 36 H 0.07 2.71 7.74 -2.39 -0.02 2.69 16 37 H 0.04 2.12 7.98 -2.39 -0.02 2.10 16 38 H 0.04 2.31 7.23 -2.39 -0.02 2.29 16 39 H 0.38 20.55 7.32 -74.06 -0.54 20.01 16 40 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 41 H 0.07 3.01 7.67 -2.39 -0.02 2.99 16 42 H 0.04 1.67 7.94 -2.39 -0.02 1.65 16 43 H 0.12 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -64.91 347.08 -0.59 -65.50 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.46 Total: 34.37 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 4.21 Total: -25.92 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -4.42 Total: -74.80 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -2.86 Total: -45.55 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -64.91 -0.59 -65.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.829 kcal (2) G-P(sol) polarization free energy of solvation -64.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds