Wall clock time and date at job start Tue Mar 31 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00082 * 2 1 4 4 C 1.38758 * 120.05467 * 0.29677 * 3 2 1 5 5 C 1.38119 * 119.94423 * 180.25485 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.46692 * 5 4 3 7 7 C 1.50704 * 119.94343 * 180.25711 * 6 5 4 8 8 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 9 9 C 1.38172 * 120.05200 * 0.03764 * 8 6 5 10 10 C 1.50700 * 120.02615 * 180.02562 * 9 8 6 11 11 N 1.46903 * 109.47098 * 259.99835 * 10 9 8 12 12 C 1.47443 * 110.99696 * 69.87605 * 11 10 9 13 13 C 1.54315 * 107.23579 * 123.26168 * 12 11 10 14 14 C 1.55139 * 103.01937 * 22.28052 * 13 12 11 15 15 O 1.42902 * 110.99279 * 82.47516 * 14 13 12 16 16 C 1.50695 * 110.99425 * 206.26047 * 14 13 12 17 17 H 1.08004 * 120.00555 * 118.54428 * 16 14 13 18 18 C 1.37881 * 119.99853 * 298.54236 * 16 14 13 19 19 N 1.31511 * 119.99906 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99899 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46739 * 90.00849 * 20 18 16 22 22 H 1.48501 * 109.46807 * 210.00402 * 20 18 16 23 23 H 1.48499 * 109.47472 * 330.00615 * 20 18 16 24 24 C 1.47842 * 111.00375 * 190.71624 * 11 10 9 25 25 H 1.08999 * 109.47080 * 300.00109 * 1 2 3 26 26 H 1.09002 * 109.47080 * 60.00398 * 1 2 3 27 27 H 1.09008 * 109.46899 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.02572 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.97592 * 179.75244 * 5 4 3 30 30 H 1.09003 * 109.46881 * 90.00474 * 7 6 5 31 31 H 1.09000 * 109.46871 * 210.00306 * 7 6 5 32 32 H 1.09000 * 109.47085 * 330.00293 * 7 6 5 33 33 H 1.07997 * 119.97921 * 180.02562 * 8 6 5 34 34 H 1.08996 * 109.47477 * 19.99841 * 10 9 8 35 35 H 1.09001 * 109.47098 * 140.00283 * 10 9 8 36 36 H 1.09006 * 109.89099 * 242.66160 * 12 11 10 37 37 H 1.08998 * 109.89272 * 3.85245 * 12 11 10 38 38 H 1.08994 * 110.71126 * 140.66342 * 13 12 11 39 39 H 1.08998 * 110.70495 * 263.72635 * 13 12 11 40 40 H 0.96705 * 113.99308 * 61.45848 * 15 14 13 41 41 H 0.97006 * 120.00063 * 180.02562 * 19 18 16 42 42 H 1.08997 * 110.37463 * 332.46909 * 24 11 10 43 43 H 1.09006 * 110.36807 * 94.80771 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0062 5 6 1.9208 3.6047 0.0009 6 6 3.3018 3.6757 0.0005 7 6 3.9860 5.0185 0.0005 8 6 4.0560 2.5171 0.0004 9 6 3.4311 1.2848 0.0000 10 6 4.2537 0.0222 0.0005 11 7 4.3204 -0.5194 -1.3635 12 6 5.1444 0.3399 -2.2334 13 6 6.2672 -0.5432 -2.8171 14 6 5.6840 -1.9757 -2.6958 15 8 4.8109 -2.2672 -3.7889 16 6 6.7846 -3.0004 -2.5996 17 1 6.8688 -3.6217 -1.7202 18 6 7.6843 -3.1450 -3.6344 19 7 7.5822 -2.3882 -4.7051 20 14 9.0492 -4.4148 -3.5149 21 1 8.5753 -5.7051 -4.0767 22 1 10.2308 -3.9451 -4.2821 23 1 9.4265 -4.6035 -2.0911 24 6 4.8961 -1.8811 -1.3654 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 0.2128 2.3203 0.0107 29 1 1.3339 4.5114 0.0017 30 1 4.1513 5.3420 1.0282 31 1 4.9438 4.9383 -0.5137 32 1 3.3578 5.7464 -0.5130 33 1 5.1344 2.5752 0.0005 34 1 5.2610 0.2448 0.3526 35 1 3.7920 -0.7121 0.6607 36 1 4.5338 0.7448 -3.0405 37 1 5.5772 1.1522 -1.6496 38 1 6.4534 -0.2901 -3.8608 39 1 7.1798 -0.4448 -2.2294 40 1 5.2420 -2.2418 -4.6542 41 1 8.2149 -2.4901 -5.4333 42 1 5.5677 -2.0104 -0.5167 43 1 4.1029 -2.6284 -1.3401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:36 Heat of formation + Delta-G solvation = -59.867403 kcal Electronic energy + Delta-G solvation = -23846.760241 eV Core-core repulsion = 20471.008235 eV Total energy + Delta-G solvation = -3375.752006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19884 -38.22133 -37.46122 -34.82777 -32.34307 -32.07186 -31.41282 -29.12307 -28.02546 -27.72486 -25.96839 -25.40139 -23.90613 -21.80930 -20.89563 -19.57868 -19.42725 -17.78702 -16.94987 -16.30266 -15.62697 -15.07872 -15.01397 -14.83098 -14.45562 -14.26604 -13.92326 -13.70885 -13.61026 -13.37961 -12.59247 -12.49192 -12.28889 -12.07144 -11.95943 -11.77174 -11.56510 -11.39551 -11.18528 -11.03590 -10.93608 -10.74813 -10.71620 -10.43140 -10.36835 -10.17515 -9.75517 -9.13116 -8.76222 -8.54157 -8.00761 -7.83381 -7.43447 -6.16091 -4.24163 1.42964 1.54955 3.24984 3.31861 3.34994 3.46425 3.80896 4.33439 4.77887 4.84961 4.91080 5.03212 5.08976 5.14644 5.19925 5.30673 5.37445 5.50063 5.56468 5.60019 5.71964 5.75565 5.81578 5.91429 5.96117 6.08574 6.18440 6.24579 6.26847 6.41413 6.54979 6.59442 6.70040 6.78414 6.93163 6.97456 7.17090 7.49276 7.56031 7.58178 7.77236 7.86766 7.93136 8.24460 8.78278 9.44435 9.59364 10.90712 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023001 B = 0.004066 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.029181 B = 6884.416407 C = 7573.910038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.299 6.299 3 C 0.145 3.855 4 C -0.211 4.211 5 C -0.087 4.087 6 C -0.130 4.130 7 C -0.106 4.106 8 C -0.076 4.076 9 C -0.094 4.094 10 C 0.097 3.903 11 N -0.516 5.516 12 C 0.046 3.954 13 C -0.144 4.144 14 C 0.252 3.748 15 O -0.578 6.578 16 C -0.535 4.535 17 H 0.060 0.940 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.061 3.939 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.124 0.876 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.375 0.625 41 H 0.266 0.734 42 H 0.045 0.955 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.011 11.673 9.426 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.211 6.211 3 C 0.099 3.901 4 C -0.230 4.230 5 C -0.105 4.105 6 C -0.130 4.130 7 C -0.163 4.163 8 C -0.095 4.095 9 C -0.095 4.095 10 C -0.031 4.031 11 N -0.239 5.239 12 C -0.082 4.082 13 C -0.183 4.183 14 C 0.212 3.788 15 O -0.386 6.386 16 C -0.574 4.574 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.066 4.066 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.142 0.858 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.224 0.776 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.792 11.428 9.562 18.398 hybrid contribution 1.749 -0.346 -0.187 1.793 sum -9.042 11.082 9.375 17.102 Atomic orbital electron populations 1.23008 0.79247 1.03737 1.00682 1.86210 1.20430 1.26400 1.88052 1.18785 0.91709 0.84143 0.95466 1.21156 0.99691 0.92406 1.09752 1.20699 0.93842 0.96742 0.99229 1.19721 0.93609 0.95285 1.04379 1.20684 1.00312 0.93541 1.01773 1.20802 0.99535 0.90683 0.98451 1.19229 0.90799 0.95482 1.04021 1.20988 0.96453 0.93219 0.92435 1.63604 1.50742 1.02668 1.06929 1.22832 0.94345 0.95034 0.95982 1.23248 0.95836 0.97860 1.01357 1.19523 0.85870 0.90309 0.83126 1.86156 1.40577 1.93603 1.18230 1.21568 1.11890 1.20174 1.03742 0.92155 1.24994 0.97397 0.95566 0.95097 1.69748 1.37771 1.38934 1.06970 0.86499 0.81150 0.81571 0.78196 1.20458 1.21155 1.19857 1.22975 0.96863 0.88875 0.97905 0.93284 0.92900 0.88421 0.85803 0.86330 0.91755 0.91719 0.91972 0.85770 0.94536 0.90357 0.92105 0.94643 0.90596 0.92778 0.77573 0.92458 0.93705 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.30 16 2 O -0.30 -4.62 9.73 -19.42 -0.19 -4.81 16 3 C 0.15 2.23 6.66 -39.22 -0.26 1.97 16 4 C -0.21 -2.71 9.04 -39.43 -0.36 -3.07 16 5 C -0.09 -1.04 9.69 -39.61 -0.38 -1.42 16 6 C -0.13 -1.62 5.88 -104.60 -0.62 -2.23 16 7 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 8 C -0.08 -1.08 8.48 -39.60 -0.34 -1.42 16 9 C -0.09 -1.51 4.96 -104.47 -0.52 -2.03 16 10 C 0.10 1.71 4.37 -4.97 -0.02 1.69 16 11 N -0.52 -10.71 5.15 -232.69 -1.20 -11.91 16 12 C 0.05 0.95 6.40 -2.84 -0.02 0.94 16 13 C -0.14 -3.43 5.37 -24.91 -0.13 -3.56 16 14 C 0.25 6.46 0.87 -89.64 -0.08 6.38 16 15 O -0.58 -15.67 13.16 -35.23 -0.46 -16.14 16 16 C -0.54 -14.64 8.27 -34.44 -0.28 -14.92 16 17 H 0.06 1.64 7.79 -52.48 -0.41 1.23 16 18 C 0.07 1.93 5.29 -17.82 -0.09 1.83 16 19 N -0.89 -24.27 10.75 55.43 0.60 -23.68 16 20 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 C 0.06 1.39 5.86 -2.30 -0.01 1.38 16 25 H 0.05 0.42 7.65 -51.93 -0.40 0.03 16 26 H 0.05 0.52 7.68 -51.93 -0.40 0.12 16 27 H 0.10 0.89 8.14 -51.92 -0.42 0.46 16 28 H 0.12 1.29 6.30 -52.49 -0.33 0.96 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.12 1.64 7.65 -52.49 -0.40 1.24 16 34 H 0.04 0.62 7.82 -51.93 -0.41 0.21 16 35 H 0.08 1.36 7.78 -51.93 -0.40 0.95 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.04 0.66 6.20 -51.93 -0.32 0.34 16 38 H 0.08 1.92 7.54 -51.93 -0.39 1.52 16 39 H 0.05 1.31 8.04 -51.93 -0.42 0.89 16 40 H 0.38 10.19 7.56 45.56 0.34 10.53 16 41 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.04 0.98 7.70 -51.93 -0.40 0.58 16 43 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 345.39 15.07 5.21 5.21 Total: -1.00 -29.79 345.39 -8.85 -38.64 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.02 Total: 10.65 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -1.76 Total: -13.83 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.60 Total: -35.59 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.65 Total: -20.95 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.79 -8.85 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.225 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds