Wall clock time and date at job start Tue Mar 31 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00082 * 2 1 4 4 C 1.38758 * 120.05467 * 0.29677 * 3 2 1 5 5 C 1.38119 * 119.94423 * 180.25485 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.46692 * 5 4 3 7 7 C 1.50704 * 119.94343 * 180.25711 * 6 5 4 8 8 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 9 9 C 1.38172 * 120.05200 * 0.03764 * 8 6 5 10 10 C 1.50700 * 120.02615 * 180.02562 * 9 8 6 11 11 N 1.46903 * 109.47098 * 259.99835 * 10 9 8 12 12 C 1.47443 * 110.99696 * 69.87605 * 11 10 9 13 13 C 1.54315 * 107.23579 * 123.26168 * 12 11 10 14 14 C 1.55139 * 103.01937 * 22.28052 * 13 12 11 15 15 O 1.42902 * 110.99279 * 82.47516 * 14 13 12 16 16 C 1.50695 * 110.99425 * 206.26047 * 14 13 12 17 17 H 1.08004 * 120.00555 * 118.54428 * 16 14 13 18 18 C 1.37881 * 119.99853 * 298.54236 * 16 14 13 19 19 N 1.31511 * 119.99906 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99899 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46739 * 90.00849 * 20 18 16 22 22 H 1.48501 * 109.46807 * 210.00402 * 20 18 16 23 23 H 1.48499 * 109.47472 * 330.00615 * 20 18 16 24 24 C 1.47842 * 111.00375 * 190.71624 * 11 10 9 25 25 H 1.08999 * 109.47080 * 300.00109 * 1 2 3 26 26 H 1.09002 * 109.47080 * 60.00398 * 1 2 3 27 27 H 1.09008 * 109.46899 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.02572 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.97592 * 179.75244 * 5 4 3 30 30 H 1.09003 * 109.46881 * 90.00474 * 7 6 5 31 31 H 1.09000 * 109.46871 * 210.00306 * 7 6 5 32 32 H 1.09000 * 109.47085 * 330.00293 * 7 6 5 33 33 H 1.07997 * 119.97921 * 180.02562 * 8 6 5 34 34 H 1.08996 * 109.47477 * 19.99841 * 10 9 8 35 35 H 1.09001 * 109.47098 * 140.00283 * 10 9 8 36 36 H 1.09006 * 109.89099 * 242.66160 * 12 11 10 37 37 H 1.08998 * 109.89272 * 3.85245 * 12 11 10 38 38 H 1.08994 * 110.71126 * 140.66342 * 13 12 11 39 39 H 1.08998 * 110.70495 * 263.72635 * 13 12 11 40 40 H 0.96705 * 113.99308 * 61.45848 * 15 14 13 41 41 H 0.97006 * 120.00063 * 180.02562 * 19 18 16 42 42 H 1.08997 * 110.37463 * 332.46909 * 24 11 10 43 43 H 1.09006 * 110.36807 * 94.80771 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0062 5 6 1.9208 3.6047 0.0009 6 6 3.3018 3.6757 0.0005 7 6 3.9860 5.0185 0.0005 8 6 4.0560 2.5171 0.0004 9 6 3.4311 1.2848 0.0000 10 6 4.2537 0.0222 0.0005 11 7 4.3204 -0.5194 -1.3635 12 6 5.1444 0.3399 -2.2334 13 6 6.2672 -0.5432 -2.8171 14 6 5.6840 -1.9757 -2.6958 15 8 4.8109 -2.2672 -3.7889 16 6 6.7846 -3.0004 -2.5996 17 1 6.8688 -3.6217 -1.7202 18 6 7.6843 -3.1450 -3.6344 19 7 7.5822 -2.3882 -4.7051 20 14 9.0492 -4.4148 -3.5149 21 1 8.5753 -5.7051 -4.0767 22 1 10.2308 -3.9451 -4.2821 23 1 9.4265 -4.6035 -2.0911 24 6 4.8961 -1.8811 -1.3654 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 0.2128 2.3203 0.0107 29 1 1.3339 4.5114 0.0017 30 1 4.1513 5.3420 1.0282 31 1 4.9438 4.9383 -0.5137 32 1 3.3578 5.7464 -0.5130 33 1 5.1344 2.5752 0.0005 34 1 5.2610 0.2448 0.3526 35 1 3.7920 -0.7121 0.6607 36 1 4.5338 0.7448 -3.0405 37 1 5.5772 1.1522 -1.6496 38 1 6.4534 -0.2901 -3.8608 39 1 7.1798 -0.4448 -2.2294 40 1 5.2420 -2.2418 -4.6542 41 1 8.2149 -2.4901 -5.4333 42 1 5.5677 -2.0104 -0.5167 43 1 4.1029 -2.6284 -1.3401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:36 Heat of formation + Delta-G solvation = -79.980628 kcal Electronic energy + Delta-G solvation = -23847.632415 eV Core-core repulsion = 20471.008235 eV Total energy + Delta-G solvation = -3376.624181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.27535 -39.93135 -38.50513 -36.63566 -34.18331 -33.61818 -32.42558 -30.73983 -29.86082 -28.63972 -27.28753 -26.62938 -25.63021 -22.86088 -22.27847 -21.39961 -20.96788 -19.03542 -18.75999 -17.41804 -16.90381 -16.85047 -16.56579 -16.29736 -15.96974 -15.69544 -15.22096 -14.77302 -14.65271 -14.49811 -14.27487 -14.00554 -13.82854 -13.38779 -13.12147 -13.09775 -12.94338 -12.88811 -12.74353 -12.65258 -12.50983 -12.25087 -12.17992 -12.15776 -11.66258 -11.62828 -11.54292 -11.08344 -10.60100 -10.09893 -9.78217 -9.10876 -8.84376 -8.21062 -6.37451 0.39911 0.54166 1.40313 1.42128 1.51624 2.38243 2.52968 2.75596 3.03191 3.34840 3.77074 3.87467 3.99619 4.08052 4.10407 4.19501 4.28476 4.38738 4.43810 4.45833 4.49635 4.52968 4.62125 4.72892 4.75791 4.79313 4.84356 4.91001 4.91563 5.07162 5.15173 5.22221 5.27855 5.42071 5.48016 5.52196 5.54303 5.72060 5.80129 5.96634 6.00045 6.24180 6.32125 6.60840 6.68314 7.34126 7.45811 8.84293 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023001 B = 0.004066 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.029181 B = 6884.416407 C = 7573.910038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.330 6.330 3 C 0.125 3.875 4 C -0.211 4.211 5 C -0.084 4.084 6 C -0.133 4.133 7 C -0.105 4.105 8 C -0.087 4.087 9 C -0.122 4.122 10 C 0.102 3.898 11 N -0.521 5.521 12 C 0.059 3.941 13 C -0.133 4.133 14 C 0.236 3.764 15 O -0.588 6.588 16 C -0.563 4.563 17 H 0.054 0.946 18 C 0.032 3.968 19 N -0.911 5.911 20 Si 0.960 3.040 21 H -0.277 1.277 22 H -0.279 1.279 23 H -0.270 1.270 24 C 0.069 3.931 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.108 0.892 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.371 0.629 41 H 0.269 0.731 42 H 0.049 0.951 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.524 13.299 10.262 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.244 6.244 3 C 0.079 3.921 4 C -0.230 4.230 5 C -0.102 4.102 6 C -0.133 4.133 7 C -0.161 4.161 8 C -0.105 4.105 9 C -0.123 4.123 10 C -0.025 4.025 11 N -0.245 5.245 12 C -0.069 4.069 13 C -0.172 4.172 14 C 0.196 3.804 15 O -0.395 6.395 16 C -0.601 4.601 17 H 0.072 0.928 18 C -0.169 4.169 19 N -0.550 5.550 20 Si 0.786 3.214 21 H -0.202 1.202 22 H -0.204 1.204 23 H -0.195 1.195 24 C -0.058 4.058 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.126 0.874 28 H 0.166 0.834 29 H 0.168 0.832 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.146 0.854 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.219 0.781 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.319 13.067 10.410 20.180 hybrid contribution 1.831 -0.808 -0.436 2.049 sum -9.488 12.258 9.974 18.433 Atomic orbital electron populations 1.23258 0.77149 1.04954 1.01958 1.86153 1.22812 1.27085 1.88310 1.19020 0.91819 0.84975 0.96306 1.21462 1.00894 0.91879 1.08724 1.21129 0.93963 0.97611 0.97494 1.20092 0.94118 0.95943 1.03124 1.20735 1.00321 0.92179 1.02905 1.20942 0.99984 0.90814 0.98797 1.19197 0.91309 0.95126 1.06641 1.20948 0.97110 0.94180 0.90299 1.63543 1.50222 1.01708 1.09070 1.22665 0.93151 0.95009 0.96028 1.23045 0.96402 0.97621 1.00176 1.19766 0.86092 0.90913 0.83631 1.86148 1.41162 1.93825 1.18414 1.21818 1.13106 1.21139 1.04072 0.92776 1.25694 0.99309 0.97217 0.94686 1.69836 1.38291 1.39618 1.07248 0.85530 0.78504 0.79128 0.78269 1.20244 1.20425 1.19483 1.22806 0.96241 0.90125 0.96657 0.91183 0.92286 0.87415 0.83445 0.83165 0.90372 0.91755 0.90366 0.85423 0.94084 0.90763 0.92904 0.92341 0.92508 0.93583 0.78108 0.92204 0.93240 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.54 16 2 O -0.33 -10.11 9.73 -92.39 -0.90 -11.01 16 3 C 0.12 3.72 6.66 22.51 0.15 3.87 16 4 C -0.21 -4.92 9.04 22.37 0.20 -4.72 16 5 C -0.08 -1.74 9.69 22.25 0.22 -1.52 16 6 C -0.13 -2.97 5.88 -19.85 -0.12 -3.09 16 7 C -0.10 -1.67 10.01 71.24 0.71 -0.96 16 8 C -0.09 -2.35 8.48 22.25 0.19 -2.17 16 9 C -0.12 -3.83 4.96 -19.77 -0.10 -3.93 16 10 C 0.10 3.60 4.37 85.56 0.37 3.98 16 11 N -0.52 -21.88 5.15 -890.09 -4.58 -26.46 16 12 C 0.06 2.48 6.40 86.65 0.55 3.03 16 13 C -0.13 -6.47 5.37 31.77 0.17 -6.30 16 14 C 0.24 12.36 0.87 -10.16 -0.01 12.35 16 15 O -0.59 -32.76 13.16 -148.98 -1.96 -34.72 16 16 C -0.56 -31.30 8.27 25.60 0.21 -31.09 16 17 H 0.05 2.99 7.79 -2.91 -0.02 2.97 16 18 C 0.03 1.71 5.29 84.66 0.45 2.16 16 19 N -0.91 -49.86 10.75 21.45 0.23 -49.63 16 20 Si 0.96 42.87 29.54 68.60 2.03 44.89 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 C 0.07 3.23 5.86 86.77 0.51 3.74 16 25 H 0.07 1.07 7.65 -2.39 -0.02 1.05 16 26 H 0.06 1.08 7.68 -2.39 -0.02 1.06 16 27 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.15 2.61 6.30 -2.91 -0.02 2.59 16 29 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.04 8.08 -2.39 -0.02 1.02 16 32 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 33 H 0.13 3.23 7.65 -2.91 -0.02 3.21 16 34 H 0.04 1.39 7.82 -2.39 -0.02 1.37 16 35 H 0.07 2.63 7.78 -2.39 -0.02 2.61 16 36 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.06 2.16 6.20 -2.39 -0.01 2.14 16 38 H 0.06 2.93 7.54 -2.39 -0.02 2.92 16 39 H 0.05 2.26 8.04 -2.39 -0.02 2.24 16 40 H 0.37 20.78 7.56 -74.05 -0.56 20.22 16 41 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16 42 H 0.05 2.22 7.70 -2.39 -0.02 2.20 16 43 H 0.06 2.83 8.14 -2.38 -0.02 2.81 16 Total: -1.00 -64.11 345.39 -0.12 -64.23 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: 0.44 Total: 35.81 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 4.62 Total: -23.11 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -4.35 Total: -76.08 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -2.86 Total: -45.73 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -64.11 -0.12 -64.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.754 kcal (2) G-P(sol) polarization free energy of solvation -64.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds