Wall clock time and date at job start Tue Mar 31 2020 06:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 117.00281 * 2 1 4 4 C 1.38751 * 120.05243 * 0.03015 * 3 2 1 5 5 C 1.38125 * 119.94680 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.97638 * 180.02562 * 5 4 3 7 7 N 1.46893 * 109.47217 * 89.99964 * 6 5 4 8 8 C 1.47843 * 111.00105 * 290.84535 * 7 6 5 9 9 C 1.54901 * 104.79760 * 213.63568 * 8 7 6 10 10 C 1.55140 * 101.65537 * 37.06905 * 9 8 7 11 11 O 1.42901 * 110.70562 * 82.72762 * 10 9 8 12 12 C 1.50696 * 110.85791 * 205.89816 * 10 9 8 13 13 H 1.08002 * 120.00408 * 113.68394 * 12 10 9 14 14 C 1.37877 * 119.99683 * 293.68140 * 12 10 9 15 15 N 1.31510 * 120.00424 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00009 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47234 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47264 * 119.99915 * 16 14 12 19 19 H 1.48503 * 109.47347 * 240.00107 * 16 14 12 20 20 C 1.47439 * 111.00215 * 169.99947 * 7 6 5 21 21 C 1.38293 * 120.05080 * 359.74301 * 5 4 3 22 22 C 1.38244 * 120.11190 * 0.51384 * 21 5 4 23 23 C 1.38171 * 120.05436 * 359.48377 * 22 21 5 24 24 C 1.50699 * 120.02521 * 180.27947 * 23 22 21 25 25 H 1.09007 * 109.46900 * 299.99519 * 1 2 3 26 26 H 1.08997 * 109.47429 * 59.99669 * 1 2 3 27 27 H 1.09000 * 109.47454 * 179.97438 * 1 2 3 28 28 H 1.08006 * 120.02893 * 359.94964 * 4 3 2 29 29 H 1.09005 * 109.47017 * 210.00214 * 6 5 4 30 30 H 1.09002 * 109.47070 * 329.99686 * 6 5 4 31 31 H 1.09004 * 110.37540 * 332.46462 * 8 7 6 32 32 H 1.08998 * 110.37729 * 94.80439 * 8 7 6 33 33 H 1.09001 * 110.99614 * 278.97514 * 9 8 7 34 34 H 1.09003 * 111.02644 * 155.17291 * 9 8 7 35 35 H 0.96694 * 113.99772 * 66.40650 * 11 10 9 36 36 H 0.97002 * 120.00794 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.88850 * 242.66182 * 20 7 6 38 38 H 1.09004 * 109.88682 * 3.85251 * 20 7 6 39 39 H 1.08001 * 119.94310 * 180.27503 * 21 5 4 40 40 H 1.08002 * 119.97539 * 179.77000 * 22 21 5 41 41 H 1.09002 * 109.47103 * 90.00686 * 24 23 22 42 42 H 1.09001 * 109.47119 * 209.99974 * 24 23 22 43 43 H 1.08996 * 109.47258 * 330.00144 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 0.0006 5 6 1.9208 3.6048 0.0012 6 6 1.1019 4.8698 0.0024 7 7 0.8365 5.2800 1.3878 8 6 -0.0903 4.3381 2.0508 9 6 -0.9247 5.2173 3.0154 10 6 -1.0968 6.5167 2.1855 11 8 -2.1808 6.3874 1.2634 12 6 -1.3059 7.7057 3.0874 13 1 -0.5592 8.4845 3.1362 14 6 -2.4505 7.7993 3.8504 15 7 -3.3595 6.8508 3.7914 16 14 -2.7100 9.2735 4.9680 17 1 -1.5493 10.1925 4.8526 18 1 -3.9482 9.9878 4.5656 19 1 -2.8391 8.8124 6.3737 20 6 0.2470 6.6305 1.4353 21 6 3.3019 3.6757 0.0064 22 6 4.0560 2.5171 0.0005 23 6 3.4311 1.2848 0.0000 24 6 4.2537 0.0221 -0.0002 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2128 2.3203 0.0003 29 1 1.6514 5.6588 -0.5112 30 1 0.1571 4.6916 -0.5111 31 1 -0.7383 3.8620 1.3149 32 1 0.4676 3.5864 2.6092 33 1 -0.3777 5.4126 3.9377 34 1 -1.8905 4.7581 3.2265 35 1 -3.0482 6.3124 1.6841 36 1 -4.1650 6.9168 4.3279 37 1 0.9137 7.3075 1.9695 38 1 0.0767 6.9966 0.4228 39 1 3.7922 4.6380 0.0113 40 1 5.1344 2.5751 0.0008 41 1 4.4517 -0.2827 1.0275 42 1 3.7065 -0.7680 -0.5143 43 1 5.1979 0.2036 -0.5137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592521727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:14 Heat of formation + Delta-G solvation = -63.377399 kcal Electronic energy + Delta-G solvation = -23672.440361 eV Core-core repulsion = 20296.536150 eV Total energy + Delta-G solvation = -3375.904211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.26222 -38.51927 -37.33414 -34.93600 -32.95866 -32.08645 -30.07855 -29.99383 -28.16578 -27.59167 -27.09819 -24.68750 -23.45030 -22.15530 -20.96502 -20.09271 -19.45375 -17.39783 -17.12053 -16.31042 -15.78846 -15.42829 -15.18934 -14.91928 -14.62769 -14.16375 -13.91926 -13.80120 -13.51986 -13.29319 -12.91040 -12.47353 -12.19607 -12.07217 -11.95069 -11.88317 -11.55835 -11.34443 -11.28139 -11.18249 -11.03301 -10.86166 -10.64665 -10.49999 -10.43204 -10.28349 -9.90011 -9.28531 -8.67283 -8.60347 -8.10961 -7.98093 -7.64666 -6.23042 -4.29859 1.40786 1.57258 3.20757 3.28952 3.29473 3.34037 3.80507 4.29626 4.71943 4.84804 4.90451 5.03588 5.05852 5.13354 5.15074 5.26686 5.33754 5.48304 5.62722 5.64057 5.68781 5.71120 5.73433 5.89794 5.96110 6.10937 6.13412 6.25189 6.28078 6.39869 6.42445 6.53888 6.56633 6.80479 6.88597 6.93673 7.06129 7.40734 7.43460 7.46400 7.65474 7.75054 7.81803 8.12863 8.71916 9.38086 9.50126 10.84308 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028235 B = 0.003639 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.444451 B = 7693.345206 C = 8165.958618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.122 3.878 4 C -0.194 4.194 5 C -0.030 4.030 6 C 0.086 3.914 7 N -0.523 5.523 8 C 0.045 3.955 9 C -0.131 4.131 10 C 0.236 3.764 11 O -0.593 6.593 12 C -0.530 4.530 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.901 3.099 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.057 3.943 21 C -0.134 4.134 22 C -0.087 4.087 23 C -0.127 4.127 24 C -0.101 4.101 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.384 0.616 36 H 0.266 0.734 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.581 -11.591 -7.363 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.077 3.923 4 C -0.213 4.213 5 C -0.031 4.031 6 C -0.042 4.042 7 N -0.247 5.247 8 C -0.082 4.082 9 C -0.170 4.170 10 C 0.196 3.804 11 O -0.403 6.403 12 C -0.569 4.569 13 H 0.081 0.919 14 C -0.133 4.133 15 N -0.540 5.540 16 Si 0.728 3.272 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.070 4.070 21 C -0.152 4.152 22 C -0.105 4.105 23 C -0.128 4.128 24 C -0.157 4.157 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.143 0.857 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.235 0.765 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.448 -11.781 -7.474 17.430 hybrid contribution -1.808 0.880 0.731 2.139 sum 8.640 -10.902 -6.743 15.459 Atomic orbital electron populations 1.23043 0.78494 1.03619 1.01686 1.86008 1.21208 1.26995 1.88963 1.18764 0.91719 0.84023 0.97807 1.21159 0.99938 0.91845 1.08350 1.19657 0.93899 0.93948 0.95575 1.21237 0.97615 0.93818 0.91511 1.63710 1.44634 1.03175 1.13150 1.23055 0.93023 0.95272 0.96854 1.23170 0.98723 0.97406 0.97703 1.19717 0.83252 0.91936 0.85504 1.86066 1.19490 1.96469 1.38295 1.21655 1.04958 1.06534 1.23725 0.91850 1.25013 0.95651 0.96318 0.96282 1.69595 1.09718 1.32972 1.41765 0.86397 0.78219 0.82413 0.80128 1.19611 1.20890 1.20869 1.22868 0.95458 0.88915 0.99752 1.20914 0.93139 0.98331 1.02842 1.20819 0.99485 0.91081 0.99136 1.19175 0.90522 0.96081 1.06987 1.20554 0.98497 0.94702 1.01983 0.92429 0.92760 0.88445 0.85699 0.90404 0.93920 0.94772 0.92286 0.91827 0.90983 0.76486 0.92356 0.90105 0.93463 0.85849 0.85692 0.91712 0.91521 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.14 9.54 -19.42 -0.19 -4.32 16 3 C 0.12 1.72 6.66 -39.22 -0.26 1.46 16 4 C -0.19 -2.87 7.91 -39.43 -0.31 -3.18 16 5 C -0.03 -0.46 5.09 -104.64 -0.53 -0.99 16 6 C 0.09 1.45 4.72 -4.98 -0.02 1.42 16 7 N -0.52 -10.21 5.15 -232.70 -1.20 -11.41 16 8 C 0.05 0.91 5.60 -2.30 -0.01 0.90 16 9 C -0.13 -3.05 5.67 -24.60 -0.14 -3.19 16 10 C 0.24 5.85 0.85 -89.95 -0.08 5.77 16 11 O -0.59 -15.38 13.08 -35.23 -0.46 -15.85 16 12 C -0.53 -14.19 8.22 -34.44 -0.28 -14.47 16 13 H 0.06 1.69 7.53 -52.49 -0.40 1.29 16 14 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 15 N -0.90 -23.96 10.69 55.43 0.59 -23.37 16 16 Si 0.90 20.64 29.54 -169.99 -5.02 15.61 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.06 1.25 6.21 -2.83 -0.02 1.23 16 21 C -0.13 -1.84 9.70 -39.56 -0.38 -2.23 16 22 C -0.09 -1.08 9.70 -39.60 -0.38 -1.47 16 23 C -0.13 -1.65 5.89 -104.47 -0.62 -2.26 16 24 C -0.10 -1.04 9.79 36.01 0.35 -0.69 16 25 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 26 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.13 1.80 5.73 -52.48 -0.30 1.50 16 29 H 0.08 1.20 7.98 -51.93 -0.41 0.79 16 30 H 0.04 0.75 7.79 -51.93 -0.40 0.35 16 31 H 0.03 0.68 6.99 -51.93 -0.36 0.32 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.53 8.05 -51.93 -0.42 1.11 16 34 H 0.07 1.76 7.76 -51.93 -0.40 1.36 16 35 H 0.38 10.18 6.98 45.56 0.32 10.50 16 36 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 37 H 0.08 1.75 7.63 -51.93 -0.40 1.36 16 38 H 0.05 1.01 7.48 -51.93 -0.39 0.62 16 39 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.69 7.53 -51.93 -0.39 0.30 16 43 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -28.33 344.15 -8.90 -37.23 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.02 Total: 11.62 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.79 Total: -14.71 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: -0.61 Total: -34.78 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.65 Total: -20.17 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.33 -8.90 -37.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592521727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.146 kcal (2) G-P(sol) polarization free energy of solvation -28.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds