Wall clock time and date at job start Tue Mar 31 2020 06:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 117.00281 * 2 1 4 4 C 1.38751 * 120.05243 * 0.03015 * 3 2 1 5 5 C 1.38125 * 119.94680 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.97638 * 180.02562 * 5 4 3 7 7 N 1.46893 * 109.47217 * 89.99964 * 6 5 4 8 8 C 1.47843 * 111.00105 * 290.84535 * 7 6 5 9 9 C 1.54901 * 104.79760 * 213.63568 * 8 7 6 10 10 C 1.55140 * 101.65537 * 37.06905 * 9 8 7 11 11 O 1.42901 * 110.70562 * 82.72762 * 10 9 8 12 12 C 1.50696 * 110.85791 * 205.89816 * 10 9 8 13 13 H 1.08002 * 120.00408 * 113.68394 * 12 10 9 14 14 C 1.37877 * 119.99683 * 293.68140 * 12 10 9 15 15 N 1.31510 * 120.00424 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00009 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47234 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47264 * 119.99915 * 16 14 12 19 19 H 1.48503 * 109.47347 * 240.00107 * 16 14 12 20 20 C 1.47439 * 111.00215 * 169.99947 * 7 6 5 21 21 C 1.38293 * 120.05080 * 359.74301 * 5 4 3 22 22 C 1.38244 * 120.11190 * 0.51384 * 21 5 4 23 23 C 1.38171 * 120.05436 * 359.48377 * 22 21 5 24 24 C 1.50699 * 120.02521 * 180.27947 * 23 22 21 25 25 H 1.09007 * 109.46900 * 299.99519 * 1 2 3 26 26 H 1.08997 * 109.47429 * 59.99669 * 1 2 3 27 27 H 1.09000 * 109.47454 * 179.97438 * 1 2 3 28 28 H 1.08006 * 120.02893 * 359.94964 * 4 3 2 29 29 H 1.09005 * 109.47017 * 210.00214 * 6 5 4 30 30 H 1.09002 * 109.47070 * 329.99686 * 6 5 4 31 31 H 1.09004 * 110.37540 * 332.46462 * 8 7 6 32 32 H 1.08998 * 110.37729 * 94.80439 * 8 7 6 33 33 H 1.09001 * 110.99614 * 278.97514 * 9 8 7 34 34 H 1.09003 * 111.02644 * 155.17291 * 9 8 7 35 35 H 0.96694 * 113.99772 * 66.40650 * 11 10 9 36 36 H 0.97002 * 120.00794 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.88850 * 242.66182 * 20 7 6 38 38 H 1.09004 * 109.88682 * 3.85251 * 20 7 6 39 39 H 1.08001 * 119.94310 * 180.27503 * 21 5 4 40 40 H 1.08002 * 119.97539 * 179.77000 * 22 21 5 41 41 H 1.09002 * 109.47103 * 90.00686 * 24 23 22 42 42 H 1.09001 * 109.47119 * 209.99974 * 24 23 22 43 43 H 1.08996 * 109.47258 * 330.00144 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 0.0006 5 6 1.9208 3.6048 0.0012 6 6 1.1019 4.8698 0.0024 7 7 0.8365 5.2800 1.3878 8 6 -0.0903 4.3381 2.0508 9 6 -0.9247 5.2173 3.0154 10 6 -1.0968 6.5167 2.1855 11 8 -2.1808 6.3874 1.2634 12 6 -1.3059 7.7057 3.0874 13 1 -0.5592 8.4845 3.1362 14 6 -2.4505 7.7993 3.8504 15 7 -3.3595 6.8508 3.7914 16 14 -2.7100 9.2735 4.9680 17 1 -1.5493 10.1925 4.8526 18 1 -3.9482 9.9878 4.5656 19 1 -2.8391 8.8124 6.3737 20 6 0.2470 6.6305 1.4353 21 6 3.3019 3.6757 0.0064 22 6 4.0560 2.5171 0.0005 23 6 3.4311 1.2848 0.0000 24 6 4.2537 0.0221 -0.0002 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2128 2.3203 0.0003 29 1 1.6514 5.6588 -0.5112 30 1 0.1571 4.6916 -0.5111 31 1 -0.7383 3.8620 1.3149 32 1 0.4676 3.5864 2.6092 33 1 -0.3777 5.4126 3.9377 34 1 -1.8905 4.7581 3.2265 35 1 -3.0482 6.3124 1.6841 36 1 -4.1650 6.9168 4.3279 37 1 0.9137 7.3075 1.9695 38 1 0.0767 6.9966 0.4228 39 1 3.7922 4.6380 0.0113 40 1 5.1344 2.5751 0.0008 41 1 4.4517 -0.2827 1.0275 42 1 3.7065 -0.7680 -0.5143 43 1 5.1979 0.2036 -0.5137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592521727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:13 Heat of formation + Delta-G solvation = -81.747218 kcal Electronic energy + Delta-G solvation = -23673.236936 eV Core-core repulsion = 20296.536150 eV Total energy + Delta-G solvation = -3376.700786 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.30983 -40.12774 -38.45826 -36.62495 -34.20838 -34.12602 -31.53269 -31.09374 -29.92897 -28.62890 -28.30400 -26.40436 -24.83564 -23.18023 -22.20092 -21.60263 -21.30168 -19.16849 -18.42387 -17.36062 -16.94081 -16.93327 -16.65900 -16.40915 -16.12651 -15.86438 -15.26428 -15.03787 -14.65786 -14.42290 -14.28374 -13.90330 -13.77788 -13.42366 -13.21816 -13.08551 -12.95493 -12.86297 -12.75185 -12.67742 -12.39497 -12.30101 -12.21225 -12.10621 -11.96429 -11.84672 -11.54846 -11.17476 -10.64836 -10.12307 -9.68630 -9.27333 -8.98929 -8.23748 -6.38377 0.34833 0.53232 1.38974 1.42379 1.53212 2.37706 2.38777 2.70993 3.00773 3.27905 3.71948 3.86142 3.86523 3.98757 4.20388 4.27568 4.30659 4.33320 4.35372 4.37456 4.47031 4.54921 4.65681 4.67063 4.71143 4.76110 4.78485 4.83819 4.88828 4.98349 5.09709 5.23265 5.32947 5.39174 5.46466 5.50885 5.57921 5.71877 5.78806 5.88360 5.95136 6.16705 6.18300 6.44722 6.66379 7.32423 7.41709 8.82032 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028235 B = 0.003639 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.444451 B = 7693.345206 C = 8165.958618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.325 6.325 3 C 0.109 3.891 4 C -0.205 4.205 5 C -0.049 4.049 6 C 0.090 3.910 7 N -0.520 5.520 8 C 0.061 3.939 9 C -0.124 4.124 10 C 0.221 3.779 11 O -0.599 6.599 12 C -0.556 4.556 13 H 0.058 0.942 14 C 0.028 3.972 15 N -0.916 5.916 16 Si 0.962 3.038 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.279 1.279 20 C 0.064 3.936 21 C -0.139 4.139 22 C -0.083 4.083 23 C -0.132 4.132 24 C -0.098 4.098 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.377 0.623 36 H 0.269 0.731 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.135 0.865 40 H 0.156 0.844 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.152 -12.178 -7.515 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.239 6.239 3 C 0.064 3.936 4 C -0.224 4.224 5 C -0.050 4.050 6 C -0.037 4.037 7 N -0.244 5.244 8 C -0.067 4.067 9 C -0.163 4.163 10 C 0.181 3.819 11 O -0.409 6.409 12 C -0.595 4.595 13 H 0.076 0.924 14 C -0.172 4.172 15 N -0.556 5.556 16 Si 0.787 3.213 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.204 1.204 20 C -0.063 4.063 21 C -0.158 4.158 22 C -0.101 4.101 23 C -0.133 4.133 24 C -0.155 4.155 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.143 0.857 28 H 0.138 0.862 29 H 0.110 0.890 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.228 0.772 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.153 0.847 40 H 0.174 0.826 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.026 -12.380 -7.637 18.873 hybrid contribution -2.297 0.998 0.751 2.615 sum 9.728 -11.381 -6.886 16.480 Atomic orbital electron populations 1.23242 0.77253 1.05364 1.01460 1.85999 1.22520 1.26543 1.88867 1.18986 0.92470 0.84098 0.98071 1.21176 0.99906 0.92246 1.09056 1.19564 0.94558 0.93151 0.97682 1.21241 0.97607 0.95272 0.89627 1.63718 1.43554 1.01946 1.15162 1.22882 0.92749 0.94876 0.96168 1.22981 0.98156 0.97488 0.97690 1.19955 0.83985 0.92036 0.85915 1.86060 1.19514 1.96531 1.38746 1.21922 1.05409 1.07318 1.24826 0.92404 1.25713 0.95376 0.98719 0.97414 1.69675 1.09880 1.34040 1.42055 0.85451 0.78043 0.79397 0.78368 1.19396 1.20519 1.20427 1.22736 0.93965 0.90340 0.99284 1.21121 0.92579 0.99568 1.02494 1.21163 1.00989 0.90236 0.97729 1.19623 0.90442 0.97513 1.05739 1.20596 0.98986 0.93279 1.02624 0.93152 0.92503 0.85748 0.86193 0.89045 0.95094 0.94754 0.91232 0.93119 0.92813 0.77199 0.92114 0.90173 0.93405 0.84704 0.82607 0.91122 0.91802 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.53 16 2 O -0.33 -8.10 9.54 -92.42 -0.88 -8.98 16 3 C 0.11 2.95 6.66 22.50 0.15 3.10 16 4 C -0.20 -5.95 7.91 22.37 0.18 -5.77 16 5 C -0.05 -1.45 5.09 -19.88 -0.10 -1.55 16 6 C 0.09 2.97 4.72 85.56 0.40 3.37 16 7 N -0.52 -20.08 5.15 -890.11 -4.59 -24.67 16 8 C 0.06 2.44 5.60 86.77 0.49 2.93 16 9 C -0.12 -5.89 5.67 31.98 0.18 -5.70 16 10 C 0.22 11.11 0.85 -10.36 -0.01 11.10 16 11 O -0.60 -31.67 13.08 -148.98 -1.95 -33.62 16 12 C -0.56 -30.10 8.22 25.60 0.21 -29.89 16 13 H 0.06 3.11 7.53 -2.91 -0.02 3.09 16 14 C 0.03 1.46 5.28 84.66 0.45 1.91 16 15 N -0.92 -49.23 10.69 21.45 0.23 -49.00 16 16 Si 0.96 42.30 29.54 68.60 2.03 44.33 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 19 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 20 C 0.06 2.80 6.21 86.65 0.54 3.34 16 21 C -0.14 -3.56 9.70 22.28 0.22 -3.34 16 22 C -0.08 -1.84 9.70 22.26 0.22 -1.62 16 23 C -0.13 -3.14 5.89 -19.77 -0.12 -3.26 16 24 C -0.10 -1.76 9.79 71.24 0.70 -1.06 16 25 H 0.05 1.04 7.66 -2.38 -0.02 1.02 16 26 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 27 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.12 3.49 5.73 -2.91 -0.02 3.47 16 29 H 0.09 2.73 7.98 -2.38 -0.02 2.71 16 30 H 0.03 1.09 7.79 -2.39 -0.02 1.07 16 31 H 0.03 1.37 6.99 -2.38 -0.02 1.36 16 32 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.05 2.48 8.05 -2.39 -0.02 2.46 16 34 H 0.05 2.70 7.76 -2.39 -0.02 2.68 16 35 H 0.38 20.56 6.98 -74.06 -0.52 20.04 16 36 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 37 H 0.08 3.48 7.63 -2.39 -0.02 3.46 16 38 H 0.05 2.05 7.48 -2.39 -0.02 2.03 16 39 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 40 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.18 7.53 -2.39 -0.02 1.16 16 43 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 Total: -1.00 -59.87 344.15 -0.07 -59.94 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: 0.49 Total: 36.92 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 4.61 Total: -24.92 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -4.36 Total: -73.67 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -2.83 Total: -42.60 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -59.87 -0.07 -59.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592521727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.807 kcal (2) G-P(sol) polarization free energy of solvation -59.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds