Wall clock time and date at job start Tue Mar 31 2020 06:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38272 * 119.94310 * 2 1 4 4 C 1.38140 * 120.05658 * 179.97438 * 3 2 1 5 5 C 1.38725 * 119.94506 * 0.02562 * 4 3 2 6 6 O 1.35908 * 120.05774 * 179.97438 * 5 4 3 7 7 C 1.42902 * 116.99819 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46690 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.46980 * 55.00185 * 8 7 6 10 10 O 1.42893 * 109.47363 * 295.00270 * 8 7 6 11 11 C 1.53000 * 109.47165 * 175.00141 * 8 7 6 12 12 N 1.46902 * 109.47267 * 185.00346 * 11 8 7 13 13 C 1.47961 * 111.00005 * 189.99860 * 12 11 8 14 14 C 1.53934 * 86.17939 * 137.58072 * 13 12 11 15 15 C 1.50703 * 113.73399 * 221.81705 * 14 13 12 16 16 H 1.07999 * 119.99920 * 358.09577 * 15 14 13 17 17 C 1.37877 * 119.99669 * 178.10223 * 15 14 13 18 18 N 1.31510 * 120.00506 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99624 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47293 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47387 * 119.99775 * 19 17 15 22 22 H 1.48498 * 109.47096 * 240.00236 * 19 17 15 23 23 C 1.48296 * 111.00409 * 289.35161 * 12 11 8 24 24 C 1.38733 * 119.89011 * 0.26954 * 5 4 3 25 25 C 1.38143 * 119.94169 * 359.43226 * 24 5 4 26 26 H 1.09002 * 109.47085 * 90.00328 * 1 2 3 27 27 H 1.09000 * 109.46968 * 210.00090 * 1 2 3 28 28 H 1.08994 * 109.47270 * 330.00063 * 1 2 3 29 29 H 1.07998 * 119.97024 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.02980 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.46925 * 60.00709 * 7 6 5 32 32 H 1.08997 * 109.47212 * 299.99897 * 7 6 5 33 33 H 0.96700 * 114.00593 * 299.99690 * 10 8 7 34 34 H 1.08997 * 109.47182 * 65.00068 * 11 8 7 35 35 H 1.09007 * 109.47120 * 305.00232 * 11 8 7 36 36 H 1.09007 * 113.75652 * 23.26342 * 13 12 11 37 37 H 1.08993 * 113.76177 * 251.90248 * 13 12 11 38 38 H 1.09002 * 113.73279 * 90.64057 * 14 13 12 39 39 H 0.96995 * 120.00309 * 180.02562 * 18 17 15 40 40 H 1.09001 * 113.86054 * 108.14174 * 23 12 11 41 41 H 1.09000 * 113.76062 * 336.68481 * 23 12 11 42 42 H 1.07997 * 120.02925 * 179.72625 * 24 5 4 43 43 H 1.08003 * 119.97412 * 180.27744 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 0.0002 0.0005 6 8 5.6325 0.0002 0.0005 7 6 6.2812 -1.2730 0.0011 8 6 7.7980 -1.0725 0.0004 9 1 8.0813 -0.4399 0.8417 10 8 8.1952 -0.4464 -1.2211 11 6 8.4920 -2.4302 0.1267 12 7 9.9424 -2.2295 0.2464 13 6 10.6668 -3.5145 0.1309 14 6 11.6693 -2.7517 -0.7538 15 6 12.1177 -3.5245 -1.9673 16 1 11.7592 -4.5302 -2.1299 17 6 12.9858 -2.9476 -2.8700 18 7 13.4228 -1.7232 -2.6717 19 14 13.5422 -3.9059 -4.3739 20 1 12.9131 -5.2510 -4.3644 21 1 13.1364 -3.1778 -5.6028 22 1 15.0199 -4.0509 -4.3495 23 6 10.5224 -1.7646 -1.0368 24 6 3.5786 -1.2006 -0.0057 25 6 2.1972 -1.1980 0.0000 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6557 2.1326 -0.0004 30 1 4.1172 2.1370 0.0010 31 1 5.9884 -1.8304 -0.8887 32 1 5.9883 -1.8296 0.8913 33 1 7.9743 -0.9545 -2.0136 34 1 8.2801 -3.0303 -0.7582 35 1 8.1223 -2.9462 1.0128 36 1 10.1101 -4.2861 -0.4010 37 1 11.0901 -3.8660 1.0717 38 1 12.4987 -2.3131 -0.1990 39 1 14.0332 -1.3173 -3.3069 40 1 10.8307 -0.7191 -1.0282 41 1 9.9237 -2.0255 -1.9095 42 1 4.1173 -2.1366 -0.0101 43 1 1.6559 -2.1326 -0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594716824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:00 Heat of formation + Delta-G solvation = -36.280143 kcal Electronic energy + Delta-G solvation = -22507.415947 eV Core-core repulsion = 19132.686762 eV Total energy + Delta-G solvation = -3374.729186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36855 -39.11287 -37.94097 -36.32411 -32.71358 -32.30988 -31.33374 -31.01213 -28.45896 -26.52500 -25.44884 -24.87749 -23.48530 -22.35247 -21.27830 -21.12003 -18.58981 -18.28871 -16.94572 -16.54953 -16.37141 -15.65195 -15.39470 -15.06733 -14.73758 -14.60123 -14.39973 -14.02901 -13.79936 -13.70603 -13.58439 -13.17522 -12.45784 -12.35982 -12.30376 -11.90636 -11.85062 -11.75372 -11.34076 -11.15645 -11.01645 -10.94343 -10.71862 -10.62696 -10.37990 -10.12978 -9.45475 -9.22641 -9.12768 -8.97793 -8.43155 -8.21774 -7.89993 -6.03857 -4.08727 1.12070 1.21566 2.98861 3.27453 3.35927 3.38656 3.53405 4.39211 4.47410 4.50996 4.61310 4.64822 4.73121 4.94086 4.94820 5.08686 5.12749 5.15064 5.20955 5.27950 5.31751 5.39780 5.48975 5.52252 5.65038 5.77667 5.82398 6.00567 6.08103 6.16227 6.22592 6.37636 6.37726 6.51607 6.58381 6.65763 6.78740 7.21035 7.28807 7.30726 7.73502 7.85514 7.91617 8.07676 8.37604 8.93602 9.55979 11.05488 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031564 B = 0.002553 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.885948 B =10963.970299 C =11095.367385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.133 4.133 3 C -0.081 4.081 4 C -0.150 4.150 5 C 0.129 3.871 6 O -0.301 6.301 7 C 0.029 3.971 8 C 0.118 3.882 9 H 0.113 0.887 10 O -0.540 6.540 11 C -0.005 4.005 12 N -0.488 5.488 13 C -0.003 4.003 14 C 0.033 3.967 15 C -0.519 4.519 16 H 0.056 0.944 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.033 3.967 24 C -0.208 4.208 25 C -0.080 4.080 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.370 0.630 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.261 0.739 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.127 0.873 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.410 2.010 5.433 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.133 4.133 3 C -0.099 4.099 4 C -0.168 4.168 5 C 0.083 3.917 6 O -0.215 6.215 7 C -0.047 4.047 8 C 0.058 3.942 9 H 0.130 0.870 10 O -0.345 6.345 11 C -0.135 4.135 12 N -0.211 5.211 13 C -0.131 4.131 14 C 0.014 3.986 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.095 4.095 24 C -0.227 4.227 25 C -0.098 4.098 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.217 0.783 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.145 0.855 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.880 3.169 6.365 23.959 hybrid contribution -0.232 -1.744 -1.921 2.606 sum -23.112 1.425 4.443 23.579 Atomic orbital electron populations 1.20701 0.91180 1.02514 1.02066 1.19815 0.96157 0.93094 1.04227 1.20841 0.92977 0.97730 0.98375 1.20469 0.93747 0.96525 1.06100 1.19121 0.82831 0.94112 0.95595 1.86177 1.15715 1.31540 1.88021 1.23693 0.94902 0.84282 1.01813 1.21884 0.87681 0.95221 0.89438 0.86962 1.86725 1.83366 1.49531 1.14837 1.23111 0.94211 0.95313 1.00815 1.68593 1.00505 1.17752 1.34228 1.24103 0.97636 0.91638 0.99754 1.20397 0.92507 0.91968 0.93769 1.21100 1.27678 1.00360 1.06582 0.92561 1.25014 0.95682 0.94900 0.98081 1.69975 1.32559 1.13308 1.36251 0.86588 0.78554 0.80133 0.83014 1.19834 1.20990 1.20935 1.23966 0.96768 1.00930 0.87863 1.21282 0.95396 0.97207 1.08806 1.20815 0.93274 0.97653 0.98107 0.91517 0.91820 0.91744 0.85498 0.85086 0.91844 0.91234 0.78335 0.94220 0.90872 0.92841 0.91659 0.92428 0.92914 0.91051 0.93038 0.85506 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.13 -1.20 5.88 -104.60 -0.62 -1.82 16 3 C -0.08 -0.76 9.69 -39.60 -0.38 -1.15 16 4 C -0.15 -1.68 9.99 -39.44 -0.39 -2.07 16 5 C 0.13 1.60 6.69 -39.22 -0.26 1.34 16 6 O -0.30 -4.17 10.10 -24.31 -0.25 -4.41 16 7 C 0.03 0.35 4.37 37.16 0.16 0.51 16 8 C 0.12 1.72 3.45 -26.73 -0.09 1.62 16 9 H 0.11 1.78 8.14 -51.92 -0.42 1.35 16 10 O -0.54 -8.97 11.17 -40.09 -0.45 -9.42 16 11 C 0.00 -0.08 4.64 -3.82 -0.02 -0.09 16 12 N -0.49 -9.69 6.27 -238.04 -1.49 -11.19 16 13 C 0.00 -0.06 7.53 -2.76 -0.02 -0.08 16 14 C 0.03 0.82 3.60 -90.84 -0.33 0.49 16 15 C -0.52 -14.05 8.77 -34.44 -0.30 -14.35 16 16 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 17 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 18 N -0.88 -25.60 13.29 55.43 0.74 -24.86 16 19 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.03 0.76 5.70 -2.57 -0.01 0.74 16 24 C -0.21 -2.24 9.04 -39.43 -0.36 -2.60 16 25 C -0.08 -0.76 9.69 -39.61 -0.38 -1.15 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 28 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 29 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.06 0.68 7.65 -51.93 -0.40 0.28 16 32 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16 33 H 0.37 5.11 8.67 45.56 0.40 5.51 16 34 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 35 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 36 H 0.05 1.07 7.74 -51.92 -0.40 0.67 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 41 H 0.05 1.16 7.02 -51.93 -0.36 0.80 16 42 H 0.13 1.19 6.30 -52.49 -0.33 0.86 16 43 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 LS Contribution 354.26 15.07 5.34 5.34 Total: -1.00 -30.69 354.26 -9.96 -40.66 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.09 Total: 5.09 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -2.74 Total: -17.20 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.76 Total: -36.05 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.69 Total: -13.83 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.69 -9.96 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.376 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds