Wall clock time and date at job start Tue Mar 31 2020 06:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38272 * 119.94310 * 2 1 4 4 C 1.38140 * 120.05658 * 179.97438 * 3 2 1 5 5 C 1.38725 * 119.94506 * 0.02562 * 4 3 2 6 6 O 1.35908 * 120.05774 * 179.97438 * 5 4 3 7 7 C 1.42902 * 116.99819 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46690 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.46980 * 55.00185 * 8 7 6 10 10 O 1.42893 * 109.47363 * 295.00270 * 8 7 6 11 11 C 1.53000 * 109.47165 * 175.00141 * 8 7 6 12 12 N 1.46902 * 109.47267 * 185.00346 * 11 8 7 13 13 C 1.47961 * 111.00005 * 189.99860 * 12 11 8 14 14 C 1.53934 * 86.17939 * 137.58072 * 13 12 11 15 15 C 1.50703 * 113.73399 * 221.81705 * 14 13 12 16 16 H 1.07999 * 119.99920 * 358.09577 * 15 14 13 17 17 C 1.37877 * 119.99669 * 178.10223 * 15 14 13 18 18 N 1.31510 * 120.00506 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99624 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47293 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47387 * 119.99775 * 19 17 15 22 22 H 1.48498 * 109.47096 * 240.00236 * 19 17 15 23 23 C 1.48296 * 111.00409 * 289.35161 * 12 11 8 24 24 C 1.38733 * 119.89011 * 0.26954 * 5 4 3 25 25 C 1.38143 * 119.94169 * 359.43226 * 24 5 4 26 26 H 1.09002 * 109.47085 * 90.00328 * 1 2 3 27 27 H 1.09000 * 109.46968 * 210.00090 * 1 2 3 28 28 H 1.08994 * 109.47270 * 330.00063 * 1 2 3 29 29 H 1.07998 * 119.97024 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.02980 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.46925 * 60.00709 * 7 6 5 32 32 H 1.08997 * 109.47212 * 299.99897 * 7 6 5 33 33 H 0.96700 * 114.00593 * 299.99690 * 10 8 7 34 34 H 1.08997 * 109.47182 * 65.00068 * 11 8 7 35 35 H 1.09007 * 109.47120 * 305.00232 * 11 8 7 36 36 H 1.09007 * 113.75652 * 23.26342 * 13 12 11 37 37 H 1.08993 * 113.76177 * 251.90248 * 13 12 11 38 38 H 1.09002 * 113.73279 * 90.64057 * 14 13 12 39 39 H 0.96995 * 120.00309 * 180.02562 * 18 17 15 40 40 H 1.09001 * 113.86054 * 108.14174 * 23 12 11 41 41 H 1.09000 * 113.76062 * 336.68481 * 23 12 11 42 42 H 1.07997 * 120.02925 * 179.72625 * 24 5 4 43 43 H 1.08003 * 119.97412 * 180.27744 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 0.0002 0.0005 6 8 5.6325 0.0002 0.0005 7 6 6.2812 -1.2730 0.0011 8 6 7.7980 -1.0725 0.0004 9 1 8.0813 -0.4399 0.8417 10 8 8.1952 -0.4464 -1.2211 11 6 8.4920 -2.4302 0.1267 12 7 9.9424 -2.2295 0.2464 13 6 10.6668 -3.5145 0.1309 14 6 11.6693 -2.7517 -0.7538 15 6 12.1177 -3.5245 -1.9673 16 1 11.7592 -4.5302 -2.1299 17 6 12.9858 -2.9476 -2.8700 18 7 13.4228 -1.7232 -2.6717 19 14 13.5422 -3.9059 -4.3739 20 1 12.9131 -5.2510 -4.3644 21 1 13.1364 -3.1778 -5.6028 22 1 15.0199 -4.0509 -4.3495 23 6 10.5224 -1.7646 -1.0368 24 6 3.5786 -1.2006 -0.0057 25 6 2.1972 -1.1980 0.0000 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6557 2.1326 -0.0004 30 1 4.1172 2.1370 0.0010 31 1 5.9884 -1.8304 -0.8887 32 1 5.9883 -1.8296 0.8913 33 1 7.9743 -0.9545 -2.0136 34 1 8.2801 -3.0303 -0.7582 35 1 8.1223 -2.9462 1.0128 36 1 10.1101 -4.2861 -0.4010 37 1 11.0901 -3.8660 1.0717 38 1 12.4987 -2.3131 -0.1990 39 1 14.0332 -1.3173 -3.3069 40 1 10.8307 -0.7191 -1.0282 41 1 9.9237 -2.0255 -1.9095 42 1 4.1173 -2.1366 -0.0101 43 1 1.6559 -2.1326 -0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594716824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:00 Heat of formation + Delta-G solvation = -57.648325 kcal Electronic energy + Delta-G solvation = -22508.342541 eV Core-core repulsion = 19132.686762 eV Total energy + Delta-G solvation = -3375.655780 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.26321 -40.59949 -38.92203 -37.55942 -34.70276 -33.12563 -32.41083 -31.95727 -29.89428 -27.60086 -26.75213 -26.63966 -24.72507 -23.44817 -22.37593 -22.06155 -20.41515 -19.20995 -18.61946 -17.78509 -17.61053 -16.66461 -16.59493 -16.32492 -16.16241 -15.86114 -15.61961 -15.31193 -15.00177 -14.43887 -14.41642 -14.19002 -13.89097 -13.74262 -13.52408 -13.10303 -12.96049 -12.89575 -12.87784 -12.50415 -12.42088 -12.31945 -12.04782 -11.82123 -11.71382 -11.58375 -11.16279 -10.89286 -10.83225 -10.45083 -9.97400 -9.57317 -9.00257 -8.13493 -6.25372 0.37457 0.44751 1.41417 1.43124 1.54510 2.06709 2.42696 2.78218 3.16172 3.23609 3.41835 3.71566 3.87095 3.90936 3.98264 3.99245 4.09176 4.21375 4.30274 4.37327 4.42491 4.45196 4.51414 4.60949 4.68356 4.77671 4.83292 4.88686 4.89229 5.00508 5.01994 5.09764 5.18058 5.37133 5.37408 5.39896 5.52696 5.64243 5.68226 5.86857 5.87903 6.30665 6.38618 6.45872 6.74536 6.84310 7.43096 8.96131 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031564 B = 0.002553 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.885948 B =10963.970299 C =11095.367385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.135 4.135 3 C -0.085 4.085 4 C -0.169 4.169 5 C 0.101 3.899 6 O -0.327 6.327 7 C 0.038 3.962 8 C 0.121 3.879 9 H 0.095 0.905 10 O -0.566 6.566 11 C -0.003 4.003 12 N -0.492 5.492 13 C 0.015 3.985 14 C 0.009 3.991 15 C -0.529 4.529 16 H 0.061 0.939 17 C 0.011 3.989 18 N -0.923 5.923 19 Si 0.958 3.042 20 H -0.262 1.262 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.051 3.949 24 C -0.214 4.214 25 C -0.087 4.087 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.149 0.851 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.380 0.620 34 H 0.050 0.950 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.038 0.962 41 H 0.053 0.947 42 H 0.139 0.861 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.087 0.261 5.294 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C -0.103 4.103 4 C -0.187 4.187 5 C 0.056 3.944 6 O -0.242 6.242 7 C -0.037 4.037 8 C 0.061 3.939 9 H 0.113 0.887 10 O -0.372 6.372 11 C -0.132 4.132 12 N -0.215 5.215 13 C -0.114 4.114 14 C -0.010 4.010 15 C -0.567 4.567 16 H 0.079 0.921 17 C -0.188 4.188 18 N -0.561 5.561 19 Si 0.783 3.217 20 H -0.186 1.186 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.078 4.078 24 C -0.233 4.233 25 C -0.105 4.105 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.167 0.833 30 H 0.146 0.854 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.228 0.772 34 H 0.068 0.932 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.157 0.843 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -25.580 1.402 6.236 26.366 hybrid contribution 0.522 -1.162 -1.818 2.220 sum -25.057 0.240 4.418 25.445 Atomic orbital electron populations 1.20759 0.89062 1.03622 1.02903 1.20229 0.97781 0.92779 1.02690 1.21143 0.92334 0.99117 0.97693 1.20676 0.94776 0.96358 1.06920 1.19368 0.82283 0.95225 0.97489 1.86114 1.16850 1.32475 1.88721 1.23550 0.92579 0.84110 1.03500 1.21802 0.89747 0.94161 0.88154 0.88748 1.86690 1.83961 1.50609 1.15973 1.23173 0.91120 0.96242 1.02653 1.68469 1.03591 1.17260 1.32186 1.23944 0.96155 0.91812 0.99441 1.20418 0.92741 0.93696 0.94140 1.21447 1.27556 1.00578 1.07135 0.92112 1.25859 0.95953 0.95755 1.01209 1.70117 1.33475 1.15049 1.37500 0.85510 0.77940 0.79081 0.79133 1.18592 1.20699 1.20815 1.23583 0.96361 0.98389 0.89496 1.21482 0.96136 0.97044 1.08614 1.21167 0.92974 0.98911 0.97428 0.90690 0.90732 0.90715 0.83341 0.85426 0.90350 0.89180 0.77199 0.93159 0.87974 0.91427 0.90323 0.96326 0.92978 0.94285 0.92839 0.84294 0.83669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 71.23 0.71 -0.32 16 2 C -0.13 -2.13 5.88 -19.85 -0.12 -2.25 16 3 C -0.09 -1.48 9.69 22.25 0.22 -1.26 16 4 C -0.17 -3.75 9.99 22.36 0.22 -3.53 16 5 C 0.10 2.46 6.69 22.50 0.15 2.61 16 6 O -0.33 -9.00 10.10 -87.87 -0.89 -9.88 16 7 C 0.04 0.85 4.37 71.98 0.31 1.17 16 8 C 0.12 3.45 3.45 30.59 0.11 3.55 16 9 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 10 O -0.57 -19.00 11.17 -144.33 -1.61 -20.62 16 11 C 0.00 -0.08 4.64 86.30 0.40 0.32 16 12 N -0.49 -19.27 6.27 -907.02 -5.69 -24.96 16 13 C 0.01 0.60 7.53 86.41 0.65 1.25 16 14 C 0.01 0.47 3.60 -10.89 -0.04 0.43 16 15 C -0.53 -28.78 8.77 25.60 0.22 -28.56 16 16 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 17 C 0.01 0.63 5.46 84.66 0.46 1.09 16 18 N -0.92 -54.95 13.29 21.45 0.28 -54.67 16 19 Si 0.96 43.24 29.54 68.60 2.03 45.27 16 20 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 C 0.05 2.37 5.70 86.34 0.49 2.86 16 24 C -0.21 -4.24 9.04 22.37 0.20 -4.04 16 25 C -0.09 -1.44 9.69 22.25 0.22 -1.23 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 28 H 0.07 0.58 8.08 -2.39 -0.02 0.56 16 29 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 30 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.08 1.50 7.65 -2.39 -0.02 1.49 16 32 H 0.09 1.62 7.68 -2.39 -0.02 1.60 16 33 H 0.38 10.49 8.67 -74.06 -0.64 9.85 16 34 H 0.05 1.39 7.69 -2.39 -0.02 1.38 16 35 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 36 H 0.07 2.53 7.74 -2.38 -0.02 2.52 16 37 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 2.44 7.02 -2.39 -0.02 2.42 16 42 H 0.14 2.28 6.30 -2.91 -0.02 2.26 16 43 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -67.70 354.26 -1.31 -69.01 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.35 Total: 23.76 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 4.21 Total: -27.91 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -5.40 Total: -79.62 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -2.50 Total: -30.50 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -67.70 -1.31 -69.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.360 kcal (2) G-P(sol) polarization free energy of solvation -67.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds