Wall clock time and date at job start Tue Mar 31 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35987 * 117.00379 * 2 1 4 4 C 1.38563 * 120.07439 * 359.97438 * 3 2 1 5 5 C 1.38243 * 119.99972 * 179.97438 * 4 3 2 6 6 C 1.50706 * 119.92333 * 180.02562 * 5 4 3 7 7 C 1.38247 * 120.14948 * 0.28195 * 5 4 3 8 8 C 1.50691 * 119.92981 * 179.72108 * 7 5 4 9 9 N 1.46908 * 109.47001 * 80.00036 * 8 7 5 10 10 C 1.47478 * 110.99999 * 265.96993 * 9 8 7 11 11 C 1.53511 * 87.93315 * 221.29807 * 10 9 8 12 12 C 1.50703 * 114.34335 * 139.68543 * 11 10 9 13 13 H 1.07994 * 119.99796 * 266.07807 * 12 11 10 14 14 C 1.37879 * 119.99688 * 86.07312 * 12 11 10 15 15 N 1.31514 * 120.00284 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99600 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46819 * 90.00427 * 16 14 12 18 18 H 1.48499 * 109.46745 * 210.00086 * 16 14 12 19 19 H 1.48496 * 109.47270 * 330.00448 * 16 14 12 20 20 C 1.47486 * 110.99923 * 169.99937 * 9 8 7 21 21 C 1.38247 * 120.14278 * 359.44602 * 7 5 4 22 22 C 1.38561 * 119.99823 * 0.55074 * 21 7 5 23 23 O 1.36000 * 120.07265 * 179.74872 * 22 21 7 24 24 C 1.42903 * 117.00008 * 359.97438 * 23 22 21 25 25 H 1.08995 * 109.47857 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47001 * 299.99931 * 1 2 3 27 27 H 1.09003 * 109.47004 * 59.99552 * 1 2 3 28 28 H 1.08005 * 119.99666 * 0.02562 * 4 3 2 29 29 H 1.08999 * 109.47015 * 90.00526 * 6 5 4 30 30 H 1.09000 * 109.46646 * 209.99679 * 6 5 4 31 31 H 1.09000 * 109.47248 * 330.00396 * 6 5 4 32 32 H 1.09000 * 109.47886 * 199.99861 * 8 7 5 33 33 H 1.09000 * 109.47472 * 320.00594 * 8 7 5 34 34 H 1.09002 * 113.47605 * 336.06679 * 10 9 8 35 35 H 1.08998 * 113.47224 * 106.52949 * 10 9 8 36 36 H 1.08996 * 114.17086 * 272.37887 * 11 10 9 37 37 H 0.96999 * 119.99861 * 180.02562 * 15 14 12 38 38 H 1.08999 * 113.47733 * 253.47054 * 20 9 8 39 39 H 1.09000 * 113.47420 * 23.88061 * 20 9 8 40 40 H 1.07999 * 120.00082 * 180.28035 * 21 7 5 41 41 H 1.08995 * 109.47048 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.46853 * 300.00259 * 24 23 22 43 43 H 1.08993 * 109.46710 * 59.99709 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2934 2.3747 -0.0005 5 6 1.9227 3.6056 0.0000 6 6 1.1019 4.8696 0.0000 7 6 3.3031 3.6797 -0.0048 8 6 3.9839 5.0240 -0.0106 9 7 3.9951 5.5731 1.3520 10 6 2.8378 6.4598 1.5741 11 6 3.7817 7.4125 2.3212 12 6 3.5418 8.8731 2.0381 13 1 4.1061 9.3730 1.2648 14 6 2.6018 9.5711 2.7664 15 7 1.9150 8.9624 3.7083 16 14 2.3050 11.3818 2.4159 17 1 1.2451 11.5191 1.3849 18 1 1.8738 12.0630 3.6630 19 1 3.5601 12.0025 1.9214 20 6 4.8555 6.7682 1.4332 21 6 4.0604 2.5231 0.0014 22 6 3.4360 1.2862 0.0009 23 8 4.1795 0.1474 0.0018 24 6 5.6004 0.3003 0.0027 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2147 2.3196 -0.0005 29 1 0.9037 5.1741 1.0277 30 1 1.6507 5.6591 -0.5134 31 1 0.1578 4.6897 -0.5142 32 1 5.0084 4.9111 -0.3651 33 1 3.4435 5.7022 -0.6710 34 1 2.4322 6.8827 0.6550 35 1 2.0704 6.0206 2.2114 36 1 3.8896 7.1920 3.3831 37 1 1.2535 9.4534 4.2204 38 1 5.7980 6.5905 1.9512 39 1 4.9891 7.2729 0.4763 40 1 5.1387 2.5837 0.0022 41 1 6.0715 -0.6825 0.0029 42 1 5.9072 0.8498 -0.8873 43 1 5.9059 0.8504 0.8926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597192995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:33 Heat of formation + Delta-G solvation = -10.612902 kcal Electronic energy + Delta-G solvation = -23481.199131 eV Core-core repulsion = 20107.582960 eV Total energy + Delta-G solvation = -3373.616171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59756 -39.11817 -38.37609 -37.05057 -32.85435 -31.85980 -31.48871 -28.72823 -27.99580 -27.26022 -26.25857 -24.92584 -24.51215 -22.62628 -21.69195 -20.42189 -18.67487 -18.15319 -16.89422 -16.74346 -16.45168 -16.03772 -15.23102 -15.06754 -14.72376 -14.46036 -14.38915 -14.08049 -14.02169 -13.52729 -13.04442 -12.92009 -12.46941 -12.25960 -11.98013 -11.89053 -11.81174 -11.41540 -11.33710 -11.17810 -11.01161 -10.98650 -10.81800 -10.62004 -10.46678 -10.25845 -9.69440 -9.25861 -8.93322 -8.48308 -8.43046 -7.96607 -7.52058 -6.07011 -4.11606 1.43201 1.58264 3.26789 3.30322 3.33189 3.34403 3.37156 3.81248 4.38605 4.80574 4.86466 5.00815 5.07593 5.10532 5.15499 5.16401 5.18751 5.25285 5.28817 5.41576 5.43983 5.50318 5.61970 5.71165 5.82587 5.91702 5.96989 6.18397 6.19527 6.33012 6.40254 6.45306 6.45966 6.66606 6.70313 6.84395 6.90306 7.09760 7.15091 7.20213 7.65810 7.71419 7.89651 8.06725 8.35824 8.91656 9.53427 11.02419 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024017 B = 0.003667 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.548270 B = 7633.190434 C = 8427.579787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.093 3.907 4 C -0.173 4.173 5 C -0.066 4.066 6 C -0.122 4.122 7 C -0.057 4.057 8 C 0.057 3.943 9 N -0.476 5.476 10 C 0.005 3.995 11 C 0.039 3.961 12 C -0.517 4.517 13 H 0.057 0.943 14 C 0.068 3.932 15 N -0.885 5.885 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.007 4.007 21 C -0.154 4.154 22 C 0.087 3.913 23 O -0.311 6.311 24 C 0.028 3.972 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.132 0.868 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.262 0.738 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.132 0.868 41 H 0.096 0.904 42 H 0.052 0.948 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 -15.228 -8.991 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.048 3.952 4 C -0.192 4.192 5 C -0.066 4.066 6 C -0.178 4.178 7 C -0.058 4.058 8 C -0.071 4.071 9 N -0.199 5.199 10 C -0.123 4.123 11 C 0.020 3.980 12 C -0.555 4.555 13 H 0.075 0.925 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.136 4.136 21 C -0.173 4.173 22 C 0.043 3.957 23 O -0.225 6.225 24 C -0.068 4.068 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.149 0.851 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.150 0.850 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.248 -16.187 -8.445 18.260 hybrid contribution -0.427 1.825 -0.780 2.030 sum -0.178 -14.362 -9.226 17.071 Atomic orbital electron populations 1.23011 0.79002 1.03520 1.01227 1.86128 1.20670 1.26199 1.89440 1.18133 0.89022 0.84917 1.03159 1.20865 0.99559 0.90939 1.07836 1.19505 0.93334 0.94587 0.99222 1.21157 0.98405 0.94584 1.03672 1.19372 0.92537 0.94568 0.99314 1.21575 0.99119 0.92728 0.93642 1.68973 1.08176 1.21873 1.20839 1.24293 0.94651 0.93460 0.99925 1.20117 0.89206 0.93388 0.95261 1.21030 1.21149 0.94309 1.18998 0.92465 1.25006 0.95837 0.98056 0.94611 1.69967 1.24097 1.36397 1.21805 0.86639 0.78544 0.85342 0.77749 1.20655 1.21152 1.19840 1.24031 0.98361 0.90844 1.00324 1.20876 1.00048 0.90390 1.06016 1.18129 0.88088 0.85882 1.03648 1.86123 1.18395 1.28469 1.89505 1.23016 0.79023 1.03403 1.01335 0.88555 0.92758 0.92925 0.85055 0.89631 0.90867 0.92438 0.91384 0.92854 0.92449 0.91684 0.91879 0.92868 0.92032 0.92829 0.84997 0.88572 0.92943 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.43 10.28 -34.20 -0.35 -4.79 16 3 C 0.09 1.42 6.70 -39.12 -0.26 1.16 16 4 C -0.17 -2.50 8.69 -39.46 -0.34 -2.85 16 5 C -0.07 -1.03 5.88 -104.61 -0.62 -1.65 16 6 C -0.12 -1.84 8.06 36.01 0.29 -1.55 16 7 C -0.06 -0.93 5.46 -104.62 -0.57 -1.50 16 8 C 0.06 0.97 4.68 -4.98 -0.02 0.94 16 9 N -0.48 -9.47 6.32 -246.08 -1.55 -11.02 16 10 C 0.01 0.12 5.10 -7.54 -0.04 0.08 16 11 C 0.04 0.97 3.76 -91.24 -0.34 0.62 16 12 C -0.52 -13.77 8.83 -34.44 -0.30 -14.07 16 13 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 14 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 15 N -0.89 -25.11 13.26 55.43 0.74 -24.38 16 16 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 C -0.01 -0.14 7.25 -7.54 -0.05 -0.20 16 21 C -0.15 -2.32 8.66 -39.46 -0.34 -2.66 16 22 C 0.09 1.36 6.70 -39.12 -0.26 1.10 16 23 O -0.31 -4.52 10.28 -34.24 -0.35 -4.87 16 24 C 0.03 0.28 9.81 101.05 0.99 1.27 16 25 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 27 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 28 H 0.13 1.57 6.30 -52.48 -0.33 1.24 16 29 H 0.09 1.43 6.07 -51.93 -0.31 1.12 16 30 H 0.07 1.14 4.77 -51.93 -0.25 0.89 16 31 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 33 H 0.05 0.89 5.75 -51.93 -0.30 0.59 16 34 H 0.06 1.24 5.88 -51.93 -0.31 0.94 16 35 H 0.06 1.51 6.87 -51.93 -0.36 1.15 16 36 H 0.06 1.72 8.11 -51.93 -0.42 1.30 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 1.07 7.87 -51.93 -0.41 0.66 16 40 H 0.13 1.73 6.28 -52.49 -0.33 1.40 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 43 H 0.06 0.54 7.66 -51.93 -0.40 0.15 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -30.31 340.95 -8.64 -38.95 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.25 Total: 1.61 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -0.98 Total: -16.31 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.82 Total: -35.40 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.70 Total: -9.66 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.31 -8.64 -38.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597192995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.336 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds