Wall clock time and date at job start Tue Mar 31 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35987 * 117.00379 * 2 1 4 4 C 1.38563 * 120.07439 * 359.97438 * 3 2 1 5 5 C 1.38243 * 119.99972 * 179.97438 * 4 3 2 6 6 C 1.50706 * 119.92333 * 180.02562 * 5 4 3 7 7 C 1.38247 * 120.14948 * 0.28195 * 5 4 3 8 8 C 1.50691 * 119.92981 * 179.72108 * 7 5 4 9 9 N 1.46908 * 109.47001 * 80.00036 * 8 7 5 10 10 C 1.47478 * 110.99999 * 265.96993 * 9 8 7 11 11 C 1.53511 * 87.93315 * 221.29807 * 10 9 8 12 12 C 1.50703 * 114.34335 * 139.68543 * 11 10 9 13 13 H 1.07994 * 119.99796 * 266.07807 * 12 11 10 14 14 C 1.37879 * 119.99688 * 86.07312 * 12 11 10 15 15 N 1.31514 * 120.00284 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99600 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46819 * 90.00427 * 16 14 12 18 18 H 1.48499 * 109.46745 * 210.00086 * 16 14 12 19 19 H 1.48496 * 109.47270 * 330.00448 * 16 14 12 20 20 C 1.47486 * 110.99923 * 169.99937 * 9 8 7 21 21 C 1.38247 * 120.14278 * 359.44602 * 7 5 4 22 22 C 1.38561 * 119.99823 * 0.55074 * 21 7 5 23 23 O 1.36000 * 120.07265 * 179.74872 * 22 21 7 24 24 C 1.42903 * 117.00008 * 359.97438 * 23 22 21 25 25 H 1.08995 * 109.47857 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47001 * 299.99931 * 1 2 3 27 27 H 1.09003 * 109.47004 * 59.99552 * 1 2 3 28 28 H 1.08005 * 119.99666 * 0.02562 * 4 3 2 29 29 H 1.08999 * 109.47015 * 90.00526 * 6 5 4 30 30 H 1.09000 * 109.46646 * 209.99679 * 6 5 4 31 31 H 1.09000 * 109.47248 * 330.00396 * 6 5 4 32 32 H 1.09000 * 109.47886 * 199.99861 * 8 7 5 33 33 H 1.09000 * 109.47472 * 320.00594 * 8 7 5 34 34 H 1.09002 * 113.47605 * 336.06679 * 10 9 8 35 35 H 1.08998 * 113.47224 * 106.52949 * 10 9 8 36 36 H 1.08996 * 114.17086 * 272.37887 * 11 10 9 37 37 H 0.96999 * 119.99861 * 180.02562 * 15 14 12 38 38 H 1.08999 * 113.47733 * 253.47054 * 20 9 8 39 39 H 1.09000 * 113.47420 * 23.88061 * 20 9 8 40 40 H 1.07999 * 120.00082 * 180.28035 * 21 7 5 41 41 H 1.08995 * 109.47048 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.46853 * 300.00259 * 24 23 22 43 43 H 1.08993 * 109.46710 * 59.99709 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2934 2.3747 -0.0005 5 6 1.9227 3.6056 0.0000 6 6 1.1019 4.8696 0.0000 7 6 3.3031 3.6797 -0.0048 8 6 3.9839 5.0240 -0.0106 9 7 3.9951 5.5731 1.3520 10 6 2.8378 6.4598 1.5741 11 6 3.7817 7.4125 2.3212 12 6 3.5418 8.8731 2.0381 13 1 4.1061 9.3730 1.2648 14 6 2.6018 9.5711 2.7664 15 7 1.9150 8.9624 3.7083 16 14 2.3050 11.3818 2.4159 17 1 1.2451 11.5191 1.3849 18 1 1.8738 12.0630 3.6630 19 1 3.5601 12.0025 1.9214 20 6 4.8555 6.7682 1.4332 21 6 4.0604 2.5231 0.0014 22 6 3.4360 1.2862 0.0009 23 8 4.1795 0.1474 0.0018 24 6 5.6004 0.3003 0.0027 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2147 2.3196 -0.0005 29 1 0.9037 5.1741 1.0277 30 1 1.6507 5.6591 -0.5134 31 1 0.1578 4.6897 -0.5142 32 1 5.0084 4.9111 -0.3651 33 1 3.4435 5.7022 -0.6710 34 1 2.4322 6.8827 0.6550 35 1 2.0704 6.0206 2.2114 36 1 3.8896 7.1920 3.3831 37 1 1.2535 9.4534 4.2204 38 1 5.7980 6.5905 1.9512 39 1 4.9891 7.2729 0.4763 40 1 5.1387 2.5837 0.0022 41 1 6.0715 -0.6825 0.0029 42 1 5.9072 0.8498 -0.8873 43 1 5.9059 0.8504 0.8926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597192995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:33 Heat of formation + Delta-G solvation = -30.261428 kcal Electronic energy + Delta-G solvation = -23482.051155 eV Core-core repulsion = 20107.582960 eV Total energy + Delta-G solvation = -3374.468195 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74002 -40.66391 -39.37960 -38.25250 -34.77236 -33.04712 -32.85454 -30.11290 -29.09502 -28.09484 -27.75898 -26.51001 -26.03167 -24.15981 -22.80388 -21.66308 -20.42780 -19.26603 -18.59561 -17.88306 -17.71282 -17.06241 -16.75011 -16.38410 -16.12472 -15.75373 -15.65950 -15.33290 -15.30359 -14.87717 -14.33647 -14.24513 -13.86264 -13.52829 -13.27753 -13.23706 -12.94329 -12.92806 -12.76824 -12.60494 -12.42170 -12.17277 -12.05428 -12.03546 -11.83525 -11.69654 -11.47200 -11.05922 -10.81117 -10.43569 -9.69445 -9.53317 -8.66513 -8.12600 -6.23821 0.29746 0.40451 1.43763 1.45242 1.55219 2.35941 2.38091 2.44047 2.64219 3.16818 3.46600 3.70975 3.81733 4.01768 4.06106 4.21941 4.30154 4.33699 4.36519 4.40321 4.41719 4.46022 4.53393 4.56773 4.66743 4.72602 4.74420 4.76329 4.79462 4.86099 4.90925 4.97872 5.01435 5.20494 5.26843 5.36147 5.47510 5.65553 5.71658 5.77587 5.87848 6.11893 6.32085 6.42172 6.62389 6.85653 7.44636 8.96961 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024017 B = 0.003667 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.548270 B = 7633.190434 C = 8427.579787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.328 6.328 3 C 0.084 3.916 4 C -0.172 4.172 5 C -0.079 4.079 6 C -0.117 4.117 7 C -0.076 4.076 8 C 0.061 3.939 9 N -0.478 5.478 10 C 0.026 3.974 11 C 0.016 3.984 12 C -0.529 4.529 13 H 0.060 0.940 14 C 0.017 3.983 15 N -0.922 5.922 16 Si 0.955 3.045 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.008 3.992 21 C -0.154 4.154 22 C 0.076 3.924 23 O -0.328 6.328 24 C 0.019 3.981 25 H 0.120 0.880 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.154 0.846 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.025 0.975 37 H 0.262 0.738 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.149 0.851 41 H 0.121 0.879 42 H 0.064 0.936 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.440 -15.730 -10.503 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.038 3.962 4 C -0.191 4.191 5 C -0.080 4.080 6 C -0.173 4.173 7 C -0.077 4.077 8 C -0.067 4.067 9 N -0.200 5.200 10 C -0.103 4.103 11 C -0.003 4.003 12 C -0.567 4.567 13 H 0.078 0.922 14 C -0.183 4.183 15 N -0.560 5.560 16 Si 0.781 3.219 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.190 1.190 20 C -0.120 4.120 21 C -0.173 4.173 22 C 0.030 3.970 23 O -0.243 6.243 24 C -0.075 4.075 25 H 0.138 0.862 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.171 0.829 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.167 0.833 41 H 0.139 0.861 42 H 0.083 0.917 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.463 -16.700 -9.970 19.456 hybrid contribution -0.473 1.835 -0.309 1.921 sum -0.010 -14.865 -10.280 18.073 Atomic orbital electron populations 1.23330 0.76748 1.05490 1.02059 1.86108 1.23075 1.25820 1.89262 1.18387 0.89441 0.85560 1.02778 1.21062 1.00713 0.90221 1.07075 1.19659 0.93469 0.95166 0.99745 1.21063 0.99501 0.94265 1.02437 1.19410 0.92956 0.94495 1.00811 1.21571 1.00514 0.92986 0.91601 1.68903 1.06581 1.21059 1.23493 1.23967 0.94311 0.92952 0.99108 1.20076 0.92698 0.93446 0.94049 1.21366 1.20948 0.95480 1.18904 0.92173 1.25793 0.95669 1.02343 0.94449 1.70099 1.24882 1.38081 1.22961 0.85603 0.78684 0.80121 0.77540 1.19914 1.21177 1.19007 1.23863 0.97770 0.90554 0.99848 1.21020 1.00887 0.89933 1.05473 1.18361 0.88650 0.86340 1.03606 1.86103 1.20441 1.28331 1.89394 1.23311 0.76968 1.05289 1.01971 0.86163 0.92278 0.91643 0.82863 0.91809 0.91611 0.90068 0.89425 0.92678 0.92198 0.93711 0.95637 0.92925 0.90946 0.91663 0.83342 0.86119 0.91721 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -8.94 10.28 -79.54 -0.82 -9.76 16 3 C 0.08 2.48 6.70 22.57 0.15 2.63 16 4 C -0.17 -4.77 8.69 22.35 0.19 -4.57 16 5 C -0.08 -2.44 5.88 -19.86 -0.12 -2.55 16 6 C -0.12 -3.47 8.06 71.24 0.57 -2.89 16 7 C -0.08 -2.39 5.46 -19.86 -0.11 -2.49 16 8 C 0.06 1.97 4.68 85.55 0.40 2.37 16 9 N -0.48 -18.81 6.32 -932.46 -5.89 -24.70 16 10 C 0.03 1.14 5.10 83.58 0.43 1.57 16 11 C 0.02 0.82 3.76 -11.20 -0.04 0.78 16 12 C -0.53 -28.38 8.83 25.60 0.23 -28.16 16 13 H 0.06 3.12 7.81 -2.91 -0.02 3.09 16 14 C 0.02 0.92 5.46 84.66 0.46 1.38 16 15 N -0.92 -53.48 13.26 21.45 0.28 -53.19 16 16 Si 0.96 42.48 29.54 68.60 2.03 44.51 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 20 C 0.01 0.33 7.25 83.58 0.61 0.94 16 21 C -0.15 -4.44 8.66 22.35 0.19 -4.25 16 22 C 0.08 2.27 6.70 22.57 0.15 2.42 16 23 O -0.33 -9.12 10.28 -79.69 -0.82 -9.94 16 24 C 0.02 0.35 9.81 113.37 1.11 1.46 16 25 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 0.96 7.66 -2.38 -0.02 0.94 16 27 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 28 H 0.15 3.38 6.30 -2.91 -0.02 3.37 16 29 H 0.06 2.18 6.07 -2.39 -0.01 2.16 16 30 H 0.07 2.02 4.77 -2.39 -0.01 2.01 16 31 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 32 H 0.09 2.47 7.94 -2.39 -0.02 2.46 16 33 H 0.06 1.77 5.75 -2.39 -0.01 1.76 16 34 H 0.06 2.62 5.88 -2.39 -0.01 2.61 16 35 H 0.04 2.16 6.87 -2.39 -0.02 2.14 16 36 H 0.03 1.45 8.11 -2.39 -0.02 1.43 16 37 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 38 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.07 2.50 7.87 -2.39 -0.02 2.48 16 40 H 0.15 3.62 6.28 -2.91 -0.02 3.60 16 41 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 1.01 7.66 -2.39 -0.02 1.00 16 43 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 Total: -1.00 -65.56 340.95 1.14 -64.42 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 1.01 Total: 18.60 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 5.34 Total: -29.94 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -5.60 Total: -77.89 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -1.64 Total: -19.70 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -65.56 1.14 -64.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597192995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.163 kcal (2) G-P(sol) polarization free energy of solvation -65.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds