Wall clock time and date at job start Tue Mar 31 2020 06:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38251 * 120.00181 * 2 1 4 4 C 1.38215 * 119.99984 * 180.27764 * 3 2 1 5 5 C 1.38257 * 120.00151 * 359.73713 * 4 3 2 6 6 C 1.38216 * 119.99611 * 359.97438 * 5 4 3 7 7 C 1.38217 * 119.99941 * 179.73693 * 2 1 3 8 8 C 1.50700 * 120.00077 * 0.02562 * 7 2 1 9 9 O 1.42897 * 109.47504 * 179.72484 * 8 7 2 10 10 C 1.42898 * 114.00168 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46980 * 179.97438 * 10 9 8 12 12 O 1.21275 * 120.00052 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99897 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99875 * 0.02562 * 13 11 10 15 15 C 1.46496 * 119.99876 * 180.02562 * 13 11 10 16 16 H 1.09001 * 109.47459 * 0.02562 * 15 13 11 17 17 C 1.53006 * 109.46995 * 240.00324 * 15 13 11 18 18 C 1.50697 * 109.47428 * 120.00071 * 15 13 11 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 15 13 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 15 13 21 21 N 1.31510 * 119.99600 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 120.00227 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.46909 * 90.00072 * 22 20 18 24 24 H 1.48503 * 109.46868 * 209.99959 * 22 20 18 25 25 H 1.48495 * 109.46964 * 330.00013 * 22 20 18 26 26 H 1.08996 * 109.47285 * 270.26098 * 1 2 3 27 27 H 1.09000 * 109.47190 * 30.26149 * 1 2 3 28 28 H 1.09000 * 109.47030 * 150.26141 * 1 2 3 29 29 H 1.08000 * 119.99976 * 0.03276 * 3 2 1 30 30 H 1.08001 * 120.00061 * 179.76316 * 4 3 2 31 31 H 1.08001 * 120.00445 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.99885 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.47095 * 59.72113 * 8 7 2 34 34 H 1.09004 * 109.47318 * 299.72454 * 8 7 2 35 35 H 1.08992 * 109.47496 * 59.99988 * 10 9 8 36 36 H 1.09003 * 109.46579 * 299.99572 * 10 9 8 37 37 H 1.08997 * 109.46807 * 269.99587 * 14 13 11 38 38 H 1.08998 * 109.47196 * 29.99871 * 14 13 11 39 39 H 1.09000 * 109.46808 * 150.00250 * 14 13 11 40 40 H 1.09001 * 109.47002 * 299.99701 * 17 15 13 41 41 H 1.08993 * 109.46955 * 60.00138 * 17 15 13 42 42 H 1.09000 * 109.47050 * 179.97438 * 17 15 13 43 43 H 0.97006 * 120.00212 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0058 5 6 4.2717 -0.0001 -0.0061 6 6 3.5806 -1.1970 -0.0001 7 6 2.1981 -1.1970 0.0055 8 6 1.4446 -2.5021 0.0109 9 8 2.3731 -3.5883 0.0095 10 6 1.7585 -4.8783 0.0138 11 6 2.8252 -5.9429 0.0113 12 8 3.9963 -5.6279 0.0059 13 7 2.4776 -7.2451 0.0151 14 6 1.0629 -7.6256 0.0211 15 6 3.5145 -8.2800 0.0132 16 1 4.4977 -7.8093 0.0091 17 6 3.3614 -9.1531 -1.2339 18 6 3.3729 -9.1353 1.2458 19 1 2.5886 -8.9290 1.9590 20 6 4.2438 -10.1820 1.4625 21 7 5.1985 -10.4335 0.5937 22 14 4.0677 -11.2427 2.9901 23 1 3.1618 -12.3828 2.6992 24 1 5.4012 -11.7595 3.3902 25 1 3.5003 -10.4289 4.0950 26 1 -0.3633 0.0047 1.0276 27 1 -0.3633 0.8876 -0.5179 28 1 -0.3633 -0.8923 -0.5098 29 1 1.6583 2.1326 0.0005 30 1 4.1205 2.1325 -0.0097 31 1 5.3517 -0.0002 -0.0102 32 1 4.1205 -2.1324 -0.0007 33 1 0.8145 -2.5615 -0.8765 34 1 0.8212 -2.5581 0.9034 35 1 1.1353 -4.9869 -0.8738 36 1 1.1415 -4.9838 0.9062 37 1 0.7159 -7.7181 1.0502 38 1 0.4789 -6.8615 -0.4920 39 1 0.9413 -8.5804 -0.4904 40 1 2.3783 -9.6238 -1.2293 41 1 3.4639 -8.5344 -2.1253 42 1 4.1332 -9.9228 -1.2355 43 1 5.8116 -11.1696 0.7463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598691848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:04 Heat of formation + Delta-G solvation = -56.742750 kcal Electronic energy + Delta-G solvation = -22785.978213 eV Core-core repulsion = 19410.361703 eV Total energy + Delta-G solvation = -3375.616511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.77020 -39.10020 -37.24559 -35.24100 -33.18077 -32.88609 -31.70372 -29.84556 -27.78707 -26.89221 -26.11918 -25.63312 -25.18205 -21.96958 -21.18754 -20.83896 -18.43902 -17.05580 -16.70591 -16.48478 -16.20160 -15.77445 -15.34753 -14.92110 -14.70030 -14.57439 -14.22190 -13.79514 -13.60914 -13.14930 -12.82647 -12.71530 -12.59514 -12.50381 -12.18086 -11.93175 -11.83849 -11.55220 -11.49812 -11.07533 -11.02087 -10.86182 -10.79918 -10.70082 -10.26206 -10.16739 -9.79167 -9.17706 -8.88569 -8.80586 -8.63708 -8.42531 -7.60719 -6.07005 -4.15133 1.24480 1.36761 3.24790 3.26384 3.33901 3.35612 3.38672 3.68888 4.22704 4.41528 4.70044 4.71358 4.88821 5.05884 5.06393 5.11215 5.20053 5.23641 5.26705 5.28975 5.38816 5.45685 5.49253 5.58105 5.67677 5.74517 5.96021 6.02024 6.07885 6.25454 6.38636 6.50743 6.55826 6.75408 6.80966 6.96980 7.03842 7.13184 7.44522 7.52679 7.71244 8.01990 8.19136 8.50302 8.83727 9.04865 9.51385 10.98367 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.002940 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.318166 B = 9520.636111 C = 9818.414441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.120 4.120 5 C -0.127 4.127 6 C -0.087 4.087 7 C -0.089 4.089 8 C 0.102 3.898 9 O -0.358 6.358 10 C 0.046 3.954 11 C 0.505 3.495 12 O -0.532 6.532 13 N -0.593 5.593 14 C 0.085 3.915 15 C 0.259 3.741 16 H 0.064 0.936 17 C -0.147 4.147 18 C -0.526 4.526 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.140 0.860 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.030 0.970 41 H 0.012 0.988 42 H 0.094 0.906 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.475 18.216 -2.514 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.145 4.145 6 C -0.105 4.105 7 C -0.089 4.089 8 C 0.025 3.975 9 O -0.276 6.276 10 C -0.034 4.034 11 C 0.290 3.710 12 O -0.409 6.409 13 N -0.327 5.327 14 C -0.059 4.059 15 C 0.159 3.841 16 H 0.082 0.918 17 C -0.206 4.206 18 C -0.564 4.564 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.158 0.842 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.049 0.951 41 H 0.031 0.969 42 H 0.113 0.887 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.483 18.259 -2.552 21.208 hybrid contribution -0.480 -0.722 0.856 1.219 sum -10.963 17.537 -1.695 20.751 Atomic orbital electron populations 1.20825 0.91332 1.02832 1.02404 1.19600 0.95849 0.92354 1.00726 1.20900 0.94273 0.97025 1.02160 1.21140 0.94300 0.98032 1.00345 1.21222 1.00121 0.92427 1.00721 1.21223 0.93744 0.99056 0.96501 1.19526 0.94360 0.92953 1.02035 1.21237 0.91098 0.84695 1.00468 1.87989 1.31764 1.12476 1.95393 1.22352 0.95440 0.83820 1.01744 1.19956 0.89484 0.83351 0.78225 1.90671 1.19226 1.81413 1.49571 1.48198 1.07886 1.05526 1.71051 1.21589 0.82109 1.01065 1.01176 1.18954 0.87184 0.83841 0.94105 0.91809 1.22102 1.01618 1.01050 0.95806 1.21317 1.15409 1.13507 1.06210 0.92273 1.24897 0.94906 0.97263 0.96748 1.69879 1.17242 1.30210 1.35268 0.86483 0.77464 0.80349 0.83026 1.20628 1.21088 1.19931 0.91037 0.91471 0.91479 0.86201 0.86282 0.85978 0.84198 0.91972 0.91941 0.90891 0.90751 0.93147 0.93141 0.90605 0.95076 0.96911 0.88727 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.60 36.01 0.35 -0.55 16 2 C -0.09 -0.91 5.88 -104.62 -0.62 -1.52 16 3 C -0.13 -1.25 9.70 -39.58 -0.38 -1.63 16 4 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 5 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 16 6 C -0.09 -1.23 9.38 -39.58 -0.37 -1.60 16 7 C -0.09 -1.13 5.88 -104.62 -0.62 -1.75 16 8 C 0.10 1.23 5.05 36.01 0.18 1.41 16 9 O -0.36 -5.85 8.36 -55.14 -0.46 -6.31 16 10 C 0.05 0.71 4.97 36.01 0.18 0.89 16 11 C 0.50 10.73 7.75 -10.98 -0.09 10.65 16 12 O -0.53 -13.81 15.83 -14.35 -0.23 -14.04 16 13 N -0.59 -12.66 2.75 -175.26 -0.48 -13.14 16 14 C 0.08 1.36 9.48 59.85 0.57 1.93 16 15 C 0.26 6.66 2.64 -69.08 -0.18 6.48 16 16 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 17 C -0.15 -3.52 8.95 37.16 0.33 -3.19 16 18 C -0.53 -14.26 8.37 -34.44 -0.29 -14.55 16 19 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 20 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -25.24 11.32 55.43 0.63 -24.61 16 22 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.07 0.47 6.63 -51.93 -0.34 0.12 16 29 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.14 2.25 7.01 -52.49 -0.37 1.89 16 33 H 0.06 0.63 7.48 -51.93 -0.39 0.24 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.91 7.40 -51.93 -0.38 0.52 16 36 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.61 6.44 -51.93 -0.33 0.28 16 39 H 0.08 1.24 6.43 -51.93 -0.33 0.90 16 40 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 352.07 15.07 5.31 5.31 Total: -1.00 -32.94 352.07 -8.59 -41.53 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.51 Total: 0.53 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -1.82 Total: -5.32 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.14 Total: -37.76 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.69 Total: -20.35 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.94 -8.59 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598691848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.210 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds