Wall clock time and date at job start Tue Mar 31 2020 06:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38251 * 120.00181 * 2 1 4 4 C 1.38215 * 119.99984 * 180.27764 * 3 2 1 5 5 C 1.38257 * 120.00151 * 359.73713 * 4 3 2 6 6 C 1.38216 * 119.99611 * 359.97438 * 5 4 3 7 7 C 1.38217 * 119.99941 * 179.73693 * 2 1 3 8 8 C 1.50700 * 120.00077 * 0.02562 * 7 2 1 9 9 O 1.42897 * 109.47504 * 179.72484 * 8 7 2 10 10 C 1.42898 * 114.00168 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46980 * 179.97438 * 10 9 8 12 12 O 1.21275 * 120.00052 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99897 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99875 * 0.02562 * 13 11 10 15 15 C 1.46496 * 119.99876 * 180.02562 * 13 11 10 16 16 H 1.09001 * 109.47459 * 0.02562 * 15 13 11 17 17 C 1.53006 * 109.46995 * 240.00324 * 15 13 11 18 18 C 1.50697 * 109.47428 * 120.00071 * 15 13 11 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 15 13 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 15 13 21 21 N 1.31510 * 119.99600 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 120.00227 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.46909 * 90.00072 * 22 20 18 24 24 H 1.48503 * 109.46868 * 209.99959 * 22 20 18 25 25 H 1.48495 * 109.46964 * 330.00013 * 22 20 18 26 26 H 1.08996 * 109.47285 * 270.26098 * 1 2 3 27 27 H 1.09000 * 109.47190 * 30.26149 * 1 2 3 28 28 H 1.09000 * 109.47030 * 150.26141 * 1 2 3 29 29 H 1.08000 * 119.99976 * 0.03276 * 3 2 1 30 30 H 1.08001 * 120.00061 * 179.76316 * 4 3 2 31 31 H 1.08001 * 120.00445 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.99885 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.47095 * 59.72113 * 8 7 2 34 34 H 1.09004 * 109.47318 * 299.72454 * 8 7 2 35 35 H 1.08992 * 109.47496 * 59.99988 * 10 9 8 36 36 H 1.09003 * 109.46579 * 299.99572 * 10 9 8 37 37 H 1.08997 * 109.46807 * 269.99587 * 14 13 11 38 38 H 1.08998 * 109.47196 * 29.99871 * 14 13 11 39 39 H 1.09000 * 109.46808 * 150.00250 * 14 13 11 40 40 H 1.09001 * 109.47002 * 299.99701 * 17 15 13 41 41 H 1.08993 * 109.46955 * 60.00138 * 17 15 13 42 42 H 1.09000 * 109.47050 * 179.97438 * 17 15 13 43 43 H 0.97006 * 120.00212 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0058 5 6 4.2717 -0.0001 -0.0061 6 6 3.5806 -1.1970 -0.0001 7 6 2.1981 -1.1970 0.0055 8 6 1.4446 -2.5021 0.0109 9 8 2.3731 -3.5883 0.0095 10 6 1.7585 -4.8783 0.0138 11 6 2.8252 -5.9429 0.0113 12 8 3.9963 -5.6279 0.0059 13 7 2.4776 -7.2451 0.0151 14 6 1.0629 -7.6256 0.0211 15 6 3.5145 -8.2800 0.0132 16 1 4.4977 -7.8093 0.0091 17 6 3.3614 -9.1531 -1.2339 18 6 3.3729 -9.1353 1.2458 19 1 2.5886 -8.9290 1.9590 20 6 4.2438 -10.1820 1.4625 21 7 5.1985 -10.4335 0.5937 22 14 4.0677 -11.2427 2.9901 23 1 3.1618 -12.3828 2.6992 24 1 5.4012 -11.7595 3.3902 25 1 3.5003 -10.4289 4.0950 26 1 -0.3633 0.0047 1.0276 27 1 -0.3633 0.8876 -0.5179 28 1 -0.3633 -0.8923 -0.5098 29 1 1.6583 2.1326 0.0005 30 1 4.1205 2.1325 -0.0097 31 1 5.3517 -0.0002 -0.0102 32 1 4.1205 -2.1324 -0.0007 33 1 0.8145 -2.5615 -0.8765 34 1 0.8212 -2.5581 0.9034 35 1 1.1353 -4.9869 -0.8738 36 1 1.1415 -4.9838 0.9062 37 1 0.7159 -7.7181 1.0502 38 1 0.4789 -6.8615 -0.4920 39 1 0.9413 -8.5804 -0.4904 40 1 2.3783 -9.6238 -1.2293 41 1 3.4639 -8.5344 -2.1253 42 1 4.1332 -9.9228 -1.2355 43 1 5.8116 -11.1696 0.7463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598691848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:04 Heat of formation + Delta-G solvation = -76.004113 kcal Electronic energy + Delta-G solvation = -22786.813449 eV Core-core repulsion = 19410.361703 eV Total energy + Delta-G solvation = -3376.451746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.92230 -40.41450 -38.44459 -37.05248 -34.84189 -33.95817 -32.64530 -31.65744 -28.93950 -27.79095 -27.55423 -27.26159 -26.59436 -23.11663 -22.68491 -21.72425 -20.08425 -18.57775 -18.26391 -17.68050 -17.37174 -17.08954 -17.00006 -16.18601 -15.91341 -15.80561 -15.46454 -14.94408 -14.69667 -14.48651 -14.11182 -13.99792 -13.89730 -13.47448 -13.32411 -13.11993 -13.03773 -12.96602 -12.81668 -12.76487 -12.67967 -12.59293 -12.19294 -12.13778 -11.87637 -11.69047 -11.18917 -10.85072 -10.64890 -10.46869 -9.67991 -9.45942 -9.35551 -8.15333 -6.32406 0.40607 0.48854 1.40531 1.42761 1.52446 1.74287 1.97107 2.41376 2.83201 2.97453 3.12563 3.67499 3.91161 3.99440 4.09977 4.11750 4.22833 4.26801 4.35132 4.46769 4.48981 4.52531 4.68368 4.70392 4.79845 4.88078 4.88595 4.90324 4.98706 5.03383 5.07042 5.16050 5.33295 5.44692 5.52433 5.59883 5.64235 5.65933 5.68532 6.00713 6.11665 6.14962 6.20867 6.75796 6.80653 7.30882 7.46651 8.89214 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.002940 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.318166 B = 9520.636111 C = 9818.414441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.121 4.121 5 C -0.143 4.143 6 C -0.121 4.121 7 C -0.108 4.108 8 C 0.099 3.901 9 O -0.395 6.395 10 C 0.060 3.940 11 C 0.489 3.511 12 O -0.597 6.597 13 N -0.599 5.599 14 C 0.078 3.922 15 C 0.261 3.739 16 H 0.004 0.996 17 C -0.133 4.133 18 C -0.539 4.539 19 H 0.062 0.938 20 C 0.013 3.987 21 N -0.919 5.919 22 Si 0.967 3.033 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.270 1.270 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.151 0.849 30 H 0.145 0.855 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.019 0.981 42 H 0.067 0.933 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.307 19.621 -2.045 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.086 4.086 3 C -0.143 4.143 4 C -0.139 4.139 5 C -0.161 4.161 6 C -0.139 4.139 7 C -0.108 4.108 8 C 0.024 3.976 9 O -0.315 6.315 10 C -0.019 4.019 11 C 0.277 3.723 12 O -0.478 6.478 13 N -0.331 5.331 14 C -0.064 4.064 15 C 0.159 3.841 16 H 0.022 0.978 17 C -0.191 4.191 18 C -0.577 4.577 19 H 0.081 0.919 20 C -0.187 4.187 21 N -0.558 5.558 22 Si 0.792 3.208 23 H -0.190 1.190 24 H -0.213 1.213 25 H -0.195 1.195 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.169 0.831 30 H 0.163 0.837 31 H 0.144 0.856 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.086 0.914 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.381 19.665 -2.089 24.451 hybrid contribution 0.729 -1.067 0.689 1.464 sum -13.652 18.598 -1.399 23.113 Atomic orbital electron populations 1.20904 0.88762 1.04136 1.03459 1.19976 0.97696 0.91564 0.99381 1.21351 0.94230 0.98172 1.00575 1.21464 0.94992 0.98154 0.99312 1.21367 1.00616 0.92712 1.01357 1.21092 0.94939 0.98327 0.99533 1.19770 0.93862 0.94441 1.02707 1.21486 0.90606 0.82979 1.02531 1.87979 1.34114 1.13563 1.95795 1.22294 0.92963 0.81682 1.04973 1.21149 0.90170 0.84358 0.76584 1.90638 1.22426 1.82440 1.52344 1.48203 1.09298 1.05021 1.70578 1.21918 0.79217 1.02681 1.02553 1.18537 0.86302 0.84535 0.94724 0.97816 1.21880 1.01790 1.00119 0.95316 1.21587 1.15585 1.13743 1.06808 0.91939 1.25778 0.94491 0.98651 0.99745 1.70033 1.17966 1.30747 1.37059 0.85420 0.77439 0.78796 0.79141 1.19009 1.21287 1.19514 0.89939 0.89740 0.90685 0.83097 0.83687 0.85618 0.87928 0.89490 0.89840 0.86890 0.87582 0.92205 0.88187 0.90842 0.92904 0.96146 0.91432 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.60 71.24 0.68 -0.63 16 2 C -0.09 -1.63 5.88 -19.87 -0.12 -1.74 16 3 C -0.13 -2.16 9.70 22.27 0.22 -1.95 16 4 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 5 C -0.14 -3.54 10.05 22.27 0.22 -3.32 16 6 C -0.12 -3.61 9.38 22.27 0.21 -3.40 16 7 C -0.11 -2.69 5.88 -19.87 -0.12 -2.80 16 8 C 0.10 2.22 5.05 71.24 0.36 2.58 16 9 O -0.40 -12.85 8.36 -129.94 -1.09 -13.94 16 10 C 0.06 1.71 4.97 71.24 0.35 2.06 16 11 C 0.49 21.13 7.75 87.66 0.68 21.81 16 12 O -0.60 -33.13 15.83 16.02 0.25 -32.87 16 13 N -0.60 -25.52 2.75 -826.80 -2.28 -27.80 16 14 C 0.08 2.30 9.48 127.77 1.21 3.51 16 15 C 0.26 13.92 2.64 44.25 0.12 14.03 16 16 H 0.00 0.25 6.90 -2.39 -0.02 0.23 16 17 C -0.13 -6.47 8.95 71.98 0.64 -5.83 16 18 C -0.54 -29.71 8.37 25.60 0.21 -29.49 16 19 H 0.06 3.32 7.65 -2.91 -0.02 3.29 16 20 C 0.01 0.71 5.30 84.66 0.45 1.16 16 21 N -0.92 -53.96 11.32 21.45 0.24 -53.72 16 22 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 28 H 0.07 0.74 6.63 -2.39 -0.02 0.72 16 29 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 30 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 32 H 0.10 3.75 7.01 -2.91 -0.02 3.73 16 33 H 0.09 1.47 7.48 -2.39 -0.02 1.45 16 34 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.11 2.31 7.40 -2.39 -0.02 2.29 16 36 H 0.11 2.36 8.11 -2.39 -0.02 2.34 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.10 1.94 6.44 -2.39 -0.02 1.93 16 39 H 0.07 2.20 6.43 -2.39 -0.02 2.19 16 40 H 0.05 2.29 6.66 -2.39 -0.02 2.27 16 41 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 43 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 Total: -1.00 -78.56 352.07 5.50 -73.05 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.99 Total: 15.91 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.35 Total: -6.13 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -2.03 Total: -81.52 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -0.83 Total: -46.81 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -78.56 5.50 -73.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598691848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.952 kcal (2) G-P(sol) polarization free energy of solvation -78.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds