Wall clock time and date at job start Tue Mar 31 2020 06:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38234 * 119.99942 * 2 1 4 4 C 1.38237 * 119.99849 * 179.97438 * 3 2 1 5 5 C 1.38239 * 120.00015 * 359.95889 * 4 3 2 6 6 C 1.50697 * 119.99658 * 180.02562 * 5 4 3 7 7 O 1.42902 * 109.47161 * 90.00099 * 6 5 4 8 8 C 1.42907 * 114.00101 * 180.02562 * 7 6 5 9 9 H 1.08995 * 109.46882 * 29.99558 * 8 7 6 10 10 C 1.53000 * 109.46528 * 269.99635 * 8 7 6 11 11 C 1.50698 * 109.47243 * 149.99859 * 8 7 6 12 12 O 1.21287 * 119.99999 * 8.56260 * 11 8 7 13 13 N 1.34771 * 120.00143 * 188.56632 * 11 8 7 14 14 C 1.46508 * 119.99766 * 4.58184 * 13 11 8 15 15 C 1.46493 * 120.00235 * 184.58050 * 13 11 8 16 16 C 1.50701 * 109.46964 * 90.00031 * 15 13 11 17 17 H 1.07998 * 120.00471 * 359.97438 * 16 15 13 18 18 C 1.37878 * 120.00088 * 180.02562 * 16 15 13 19 19 N 1.31518 * 119.99999 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00357 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46964 * 89.99593 * 20 18 16 22 22 H 1.48492 * 109.47364 * 210.00155 * 20 18 16 23 23 H 1.48502 * 109.46864 * 330.00197 * 20 18 16 24 24 C 1.38226 * 120.00163 * 0.26992 * 5 4 3 25 25 C 1.38238 * 120.00045 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47236 * 90.00275 * 1 2 3 27 27 H 1.09001 * 109.47250 * 209.99967 * 1 2 3 28 28 H 1.08997 * 109.47525 * 329.99977 * 1 2 3 29 29 H 1.07991 * 120.00053 * 359.97438 * 3 2 1 30 30 H 1.07998 * 119.99747 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.47484 * 329.99770 * 6 5 4 32 32 H 1.09000 * 109.46887 * 209.99672 * 6 5 4 33 33 H 1.08996 * 109.47369 * 67.16305 * 10 8 7 34 34 H 1.09004 * 109.46696 * 187.15538 * 10 8 7 35 35 H 1.09001 * 109.47526 * 307.15713 * 10 8 7 36 36 H 1.08997 * 109.46924 * 86.12016 * 14 13 11 37 37 H 1.08994 * 109.46898 * 206.11855 * 14 13 11 38 38 H 1.08996 * 109.47063 * 326.11714 * 14 13 11 39 39 H 1.09003 * 109.47228 * 209.99545 * 15 13 11 40 40 H 1.09000 * 109.47222 * 330.00469 * 15 13 11 41 41 H 0.97001 * 120.00079 * 179.97438 * 19 18 16 42 42 H 1.07998 * 120.00690 * 179.73030 * 24 5 4 43 43 H 1.08006 * 120.00130 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2716 -0.0001 0.0019 6 6 5.7786 0.0000 0.0031 7 8 6.2539 0.0010 1.3508 8 6 7.6784 0.0017 1.4647 9 1 8.1113 0.5152 0.6062 10 6 8.1873 -1.4406 1.5063 11 6 8.0808 0.7130 2.7309 12 8 7.2363 1.0366 3.5391 13 7 9.3788 0.9896 2.9651 14 6 10.3872 0.6898 1.9454 15 6 9.7815 1.5901 4.2392 16 6 10.0956 0.5000 5.2312 17 1 10.0039 -0.5364 4.9418 18 6 10.4989 0.8258 6.5088 19 7 10.6100 2.0879 6.8616 20 14 10.8875 -0.5254 7.7388 21 1 12.3256 -0.8832 7.6431 22 1 10.5869 -0.0464 9.1118 23 1 10.0590 -1.7208 7.4390 24 6 3.5805 -1.1972 -0.0029 25 6 2.1981 -1.1972 0.0005 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6581 2.1324 -0.0004 30 1 4.1204 2.1324 0.0001 31 1 6.1424 0.8896 -0.5111 32 1 6.1423 -0.8904 -0.5098 33 1 8.0089 -1.9168 0.5422 34 1 9.2562 -1.4427 1.7202 35 1 7.6596 -1.9898 2.2860 36 1 10.4605 1.5259 1.2501 37 1 11.3528 0.5304 2.4252 38 1 10.0984 -0.2101 1.4025 39 1 10.6664 2.2079 4.0861 40 1 8.9691 2.2074 4.6228 41 1 10.8934 2.3171 7.7605 42 1 4.1204 -2.1325 -0.0062 43 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599152235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:16 Heat of formation + Delta-G solvation = -55.324056 kcal Electronic energy + Delta-G solvation = -22760.526132 eV Core-core repulsion = 19384.971141 eV Total energy + Delta-G solvation = -3375.554992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.75332 -39.20878 -37.24980 -34.79547 -33.54957 -32.67424 -31.09681 -31.01844 -28.46317 -27.63251 -26.03667 -24.74247 -23.84808 -22.81958 -22.10030 -20.91318 -18.70072 -17.09945 -16.53350 -16.40608 -15.94549 -15.79376 -15.18068 -15.00508 -14.81100 -14.40720 -14.17077 -13.91058 -13.52086 -13.38720 -13.23424 -12.74476 -12.52106 -12.31347 -12.28038 -12.04298 -12.02600 -11.86524 -11.41445 -11.26878 -11.15410 -11.04423 -10.93289 -10.79147 -10.54657 -10.13421 -9.70089 -9.60010 -8.99463 -8.77530 -8.60944 -8.42185 -7.62384 -6.02881 -4.07815 1.14637 1.33446 3.29692 3.31176 3.37781 3.40451 3.45309 3.80892 4.32570 4.46695 4.65767 4.69367 4.86187 4.91479 4.96697 5.02462 5.12648 5.24216 5.26460 5.31646 5.36351 5.37082 5.42901 5.52670 5.61017 5.62025 5.79154 5.82240 5.89605 5.96392 5.97914 6.14333 6.30000 6.37321 6.47284 6.53318 6.90229 6.99111 7.26328 7.46999 7.56728 7.93975 8.24580 8.41626 8.91863 9.12070 9.57304 11.05212 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.003056 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.578784 B = 9160.863749 C = 9528.715791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.091 4.091 5 C -0.090 4.090 6 C 0.099 3.901 7 O -0.348 6.348 8 C 0.070 3.930 9 H 0.077 0.923 10 C -0.175 4.175 11 C 0.507 3.493 12 O -0.521 6.521 13 N -0.601 5.601 14 C 0.071 3.929 15 C 0.245 3.755 16 C -0.527 4.527 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.094 4.094 25 C -0.126 4.126 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.033 0.967 40 H 0.045 0.955 41 H 0.263 0.737 42 H 0.123 0.877 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.782 -5.348 -19.430 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.109 4.109 5 C -0.091 4.091 6 C 0.023 3.977 7 O -0.267 6.267 8 C 0.009 3.991 9 H 0.095 0.905 10 C -0.232 4.232 11 C 0.292 3.708 12 O -0.396 6.396 13 N -0.336 5.336 14 C -0.073 4.073 15 C 0.127 3.873 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.112 4.112 25 C -0.144 4.144 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.141 0.859 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.308 -5.038 -18.661 22.915 hybrid contribution 0.607 -0.726 0.530 1.085 sum -11.702 -5.764 -18.131 22.335 Atomic orbital electron populations 1.20794 0.91275 1.02864 1.02154 1.19955 0.96055 0.93299 0.99193 1.21014 0.94063 0.97589 1.01568 1.21084 0.94189 0.97724 0.97930 1.19565 0.94184 0.93587 1.01721 1.21383 0.90701 1.00632 0.85001 1.88172 1.19152 1.94938 1.24399 1.21999 0.82614 0.96806 0.97694 0.90506 1.22370 1.02746 0.95315 1.02817 1.20023 0.83144 0.80334 0.87327 1.90687 1.49813 1.51817 1.47263 1.48081 1.05086 1.61766 1.18633 1.21915 0.93978 0.99622 0.91819 1.19313 0.96182 0.93803 0.78045 1.21442 1.45398 0.93177 0.96560 0.92426 1.24944 0.95484 0.95633 0.98077 1.69936 1.47326 1.16334 1.19777 0.86491 0.78390 0.82011 0.80510 1.20646 1.21069 1.19855 1.21037 0.94156 0.97548 0.98443 1.20996 0.94051 0.97530 1.01806 0.91263 0.91546 0.91503 0.85982 0.85812 0.92531 0.92518 0.92000 0.89916 0.90922 0.93797 0.90447 0.91739 0.94872 0.93715 0.92704 0.85925 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.08 -0.89 5.88 -104.63 -0.62 -1.50 16 3 C -0.12 -1.37 9.70 -39.58 -0.38 -1.76 16 4 C -0.09 -1.13 9.70 -39.58 -0.38 -1.51 16 5 C -0.09 -1.16 5.51 -104.63 -0.58 -1.74 16 6 C 0.10 1.25 5.87 36.00 0.21 1.46 16 7 O -0.35 -6.04 9.52 -54.99 -0.52 -6.57 16 8 C 0.07 1.15 2.32 -27.88 -0.06 1.08 16 9 H 0.08 1.00 7.36 -51.93 -0.38 0.62 16 10 C -0.18 -2.41 9.12 37.16 0.34 -2.08 16 11 C 0.51 11.23 7.03 -10.99 -0.08 11.15 16 12 O -0.52 -14.29 16.08 -14.21 -0.23 -14.52 16 13 N -0.60 -13.05 2.86 -182.96 -0.52 -13.58 16 14 C 0.07 1.10 9.80 59.85 0.59 1.69 16 15 C 0.25 6.56 5.18 -5.20 -0.03 6.53 16 16 C -0.53 -15.13 9.39 -34.44 -0.32 -15.46 16 17 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 20 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.09 -1.10 9.70 -39.58 -0.38 -1.48 16 25 C -0.13 -1.34 9.70 -39.58 -0.38 -1.72 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.06 0.63 8.03 -51.93 -0.42 0.21 16 32 H 0.06 0.58 7.99 -51.93 -0.42 0.17 16 33 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 34 H 0.08 1.10 5.46 -51.93 -0.28 0.82 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 1.23 8.04 -51.93 -0.42 0.82 16 38 H 0.06 0.82 4.31 -51.93 -0.22 0.60 16 39 H 0.03 0.88 8.07 -51.93 -0.42 0.47 16 40 H 0.04 1.36 7.36 -51.93 -0.38 0.97 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 360.59 15.07 5.43 5.43 Total: -1.00 -35.72 360.59 -8.65 -44.37 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.70 Total: -1.85 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.82 Total: -4.16 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.21 Total: -39.78 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.75 Total: -21.08 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.72 -8.65 -44.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599152235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.952 kcal (2) G-P(sol) polarization free energy of solvation -35.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds