Wall clock time and date at job start Tue Mar 31 2020 06:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38234 * 119.99942 * 2 1 4 4 C 1.38237 * 119.99849 * 179.97438 * 3 2 1 5 5 C 1.38239 * 120.00015 * 359.95889 * 4 3 2 6 6 C 1.50697 * 119.99658 * 180.02562 * 5 4 3 7 7 O 1.42902 * 109.47161 * 90.00099 * 6 5 4 8 8 C 1.42907 * 114.00101 * 180.02562 * 7 6 5 9 9 H 1.08995 * 109.46882 * 29.99558 * 8 7 6 10 10 C 1.53000 * 109.46528 * 269.99635 * 8 7 6 11 11 C 1.50698 * 109.47243 * 149.99859 * 8 7 6 12 12 O 1.21287 * 119.99999 * 8.56260 * 11 8 7 13 13 N 1.34771 * 120.00143 * 188.56632 * 11 8 7 14 14 C 1.46508 * 119.99766 * 4.58184 * 13 11 8 15 15 C 1.46493 * 120.00235 * 184.58050 * 13 11 8 16 16 C 1.50701 * 109.46964 * 90.00031 * 15 13 11 17 17 H 1.07998 * 120.00471 * 359.97438 * 16 15 13 18 18 C 1.37878 * 120.00088 * 180.02562 * 16 15 13 19 19 N 1.31518 * 119.99999 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00357 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46964 * 89.99593 * 20 18 16 22 22 H 1.48492 * 109.47364 * 210.00155 * 20 18 16 23 23 H 1.48502 * 109.46864 * 330.00197 * 20 18 16 24 24 C 1.38226 * 120.00163 * 0.26992 * 5 4 3 25 25 C 1.38238 * 120.00045 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47236 * 90.00275 * 1 2 3 27 27 H 1.09001 * 109.47250 * 209.99967 * 1 2 3 28 28 H 1.08997 * 109.47525 * 329.99977 * 1 2 3 29 29 H 1.07991 * 120.00053 * 359.97438 * 3 2 1 30 30 H 1.07998 * 119.99747 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.47484 * 329.99770 * 6 5 4 32 32 H 1.09000 * 109.46887 * 209.99672 * 6 5 4 33 33 H 1.08996 * 109.47369 * 67.16305 * 10 8 7 34 34 H 1.09004 * 109.46696 * 187.15538 * 10 8 7 35 35 H 1.09001 * 109.47526 * 307.15713 * 10 8 7 36 36 H 1.08997 * 109.46924 * 86.12016 * 14 13 11 37 37 H 1.08994 * 109.46898 * 206.11855 * 14 13 11 38 38 H 1.08996 * 109.47063 * 326.11714 * 14 13 11 39 39 H 1.09003 * 109.47228 * 209.99545 * 15 13 11 40 40 H 1.09000 * 109.47222 * 330.00469 * 15 13 11 41 41 H 0.97001 * 120.00079 * 179.97438 * 19 18 16 42 42 H 1.07998 * 120.00690 * 179.73030 * 24 5 4 43 43 H 1.08006 * 120.00130 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2716 -0.0001 0.0019 6 6 5.7786 0.0000 0.0031 7 8 6.2539 0.0010 1.3508 8 6 7.6784 0.0017 1.4647 9 1 8.1113 0.5152 0.6062 10 6 8.1873 -1.4406 1.5063 11 6 8.0808 0.7130 2.7309 12 8 7.2363 1.0366 3.5391 13 7 9.3788 0.9896 2.9651 14 6 10.3872 0.6898 1.9454 15 6 9.7815 1.5901 4.2392 16 6 10.0956 0.5000 5.2312 17 1 10.0039 -0.5364 4.9418 18 6 10.4989 0.8258 6.5088 19 7 10.6100 2.0879 6.8616 20 14 10.8875 -0.5254 7.7388 21 1 12.3256 -0.8832 7.6431 22 1 10.5869 -0.0464 9.1118 23 1 10.0590 -1.7208 7.4390 24 6 3.5805 -1.1972 -0.0029 25 6 2.1981 -1.1972 0.0005 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6581 2.1324 -0.0004 30 1 4.1204 2.1324 0.0001 31 1 6.1424 0.8896 -0.5111 32 1 6.1423 -0.8904 -0.5098 33 1 8.0089 -1.9168 0.5422 34 1 9.2562 -1.4427 1.7202 35 1 7.6596 -1.9898 2.2860 36 1 10.4605 1.5259 1.2501 37 1 11.3528 0.5304 2.4252 38 1 10.0984 -0.2101 1.4025 39 1 10.6664 2.2079 4.0861 40 1 8.9691 2.2074 4.6228 41 1 10.8934 2.3171 7.7605 42 1 4.1204 -2.1325 -0.0062 43 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599152235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:16 Heat of formation + Delta-G solvation = -77.160520 kcal Electronic energy + Delta-G solvation = -22761.473032 eV Core-core repulsion = 19384.971141 eV Total energy + Delta-G solvation = -3376.501892 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06492 -40.33295 -38.54271 -36.63347 -34.89098 -34.30183 -32.39306 -31.84801 -29.66030 -29.17963 -27.53951 -25.92470 -25.29676 -23.75812 -23.62808 -21.75114 -20.31202 -18.69076 -18.37180 -17.80245 -17.06610 -16.83042 -16.74407 -16.25191 -16.12197 -15.91504 -15.52399 -14.80577 -14.60379 -14.38075 -14.29202 -14.22757 -13.96398 -13.59160 -13.42123 -13.36833 -13.15110 -13.05838 -12.91452 -12.78547 -12.63063 -12.42856 -12.30348 -12.17204 -11.86685 -11.81646 -11.69317 -10.88953 -10.65180 -10.34231 -9.84289 -9.51972 -9.44500 -8.23712 -6.38946 0.28533 0.48546 1.35522 1.39358 1.49408 1.74472 2.04163 2.37838 2.70657 3.05802 3.19914 3.59202 3.84407 3.85648 3.95509 4.05871 4.11585 4.14224 4.25168 4.32822 4.38820 4.58761 4.62696 4.67102 4.71147 4.77256 4.83715 4.84375 4.93959 4.94795 4.97744 5.17022 5.21179 5.26552 5.28382 5.46693 5.53709 5.66163 5.67554 5.80606 6.04008 6.08683 6.14876 6.68793 6.74742 7.26318 7.44511 8.83686 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.003056 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.578784 B = 9160.863749 C = 9528.715791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.112 4.112 5 C -0.115 4.115 6 C 0.096 3.904 7 O -0.385 6.385 8 C 0.082 3.918 9 H 0.118 0.882 10 C -0.169 4.169 11 C 0.492 3.508 12 O -0.591 6.591 13 N -0.606 5.606 14 C 0.063 3.937 15 C 0.258 3.742 16 C -0.543 4.543 17 H 0.055 0.945 18 C 0.006 3.994 19 N -0.930 5.930 20 Si 0.970 3.030 21 H -0.260 1.260 22 H -0.282 1.282 23 H -0.273 1.273 24 C -0.104 4.104 25 C -0.134 4.134 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.028 0.972 40 H -0.006 1.006 41 H 0.267 0.733 42 H 0.137 0.863 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.611 -7.519 -21.389 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.155 4.155 4 C -0.130 4.130 5 C -0.115 4.115 6 C 0.021 3.979 7 O -0.305 6.305 8 C 0.022 3.978 9 H 0.136 0.864 10 C -0.226 4.226 11 C 0.280 3.720 12 O -0.472 6.472 13 N -0.338 5.338 14 C -0.078 4.078 15 C 0.137 3.863 16 C -0.582 4.582 17 H 0.074 0.926 18 C -0.193 4.193 19 N -0.569 5.569 20 Si 0.794 3.206 21 H -0.184 1.184 22 H -0.207 1.207 23 H -0.198 1.198 24 C -0.122 4.122 25 C -0.152 4.152 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.155 0.845 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.046 0.954 40 H 0.012 0.988 41 H 0.076 0.924 42 H 0.155 0.845 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.099 -7.222 -20.684 25.028 hybrid contribution 0.484 0.009 1.086 1.189 sum -11.615 -7.214 -19.598 23.896 Atomic orbital electron populations 1.20846 0.89168 1.03574 1.03320 1.20362 0.97731 0.93003 0.98020 1.21296 0.93848 0.98801 1.01512 1.21287 0.95075 0.97893 0.98786 1.19783 0.94682 0.94152 1.02909 1.21630 0.90600 1.02625 0.83083 1.88136 1.19556 1.95195 1.27583 1.21951 0.82939 0.97826 0.95126 0.86413 1.22366 1.02469 0.93276 1.04480 1.21281 0.82352 0.79441 0.88889 1.90640 1.51688 1.54654 1.50188 1.48098 1.06653 1.60964 1.18091 1.22278 0.92133 1.02615 0.90822 1.18794 0.93846 0.93157 0.80547 1.21708 1.45566 0.93344 0.97565 0.92629 1.25906 0.95107 0.98172 1.00138 1.70061 1.47934 1.18461 1.20476 0.85382 0.79103 0.78576 0.77554 1.18447 1.20730 1.19767 1.21309 0.94879 0.97772 0.98285 1.21348 0.93988 0.98646 1.01187 0.89753 0.90633 0.91030 0.84475 0.85931 0.91241 0.89595 0.87528 0.89283 0.93451 0.90806 0.90881 0.87985 0.95388 0.98812 0.92366 0.84543 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.01 71.23 0.71 -0.76 16 2 C -0.09 -1.79 5.88 -19.87 -0.12 -1.91 16 3 C -0.14 -2.97 9.70 22.27 0.22 -2.75 16 4 C -0.11 -2.79 9.70 22.27 0.22 -2.58 16 5 C -0.12 -2.88 5.51 -19.87 -0.11 -2.99 16 6 C 0.10 2.25 5.87 71.24 0.42 2.67 16 7 O -0.39 -13.09 9.52 -130.08 -1.24 -14.33 16 8 C 0.08 2.54 2.32 29.85 0.07 2.61 16 9 H 0.12 2.63 7.36 -2.39 -0.02 2.61 16 10 C -0.17 -4.15 9.12 71.98 0.66 -3.49 16 11 C 0.49 22.20 7.03 87.66 0.62 22.81 16 12 O -0.59 -34.31 16.08 15.84 0.25 -34.06 16 13 N -0.61 -26.51 2.86 -851.14 -2.43 -28.94 16 14 C 0.06 1.83 9.80 127.77 1.25 3.08 16 15 C 0.26 14.39 5.18 85.63 0.44 14.83 16 16 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 17 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 18 C 0.01 0.33 5.46 84.65 0.46 0.79 16 19 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 20 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 23 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 24 C -0.10 -2.31 9.70 22.27 0.22 -2.10 16 25 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 28 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 29 H 0.14 2.39 8.06 -2.92 -0.02 2.37 16 30 H 0.12 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.07 1.40 8.03 -2.39 -0.02 1.38 16 32 H 0.09 1.46 7.99 -2.39 -0.02 1.44 16 33 H 0.11 1.70 8.05 -2.39 -0.02 1.68 16 34 H 0.09 2.05 5.46 -2.38 -0.01 2.04 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 2.20 8.04 -2.39 -0.02 2.18 16 38 H 0.10 2.19 4.31 -2.39 -0.01 2.18 16 39 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 40 H -0.01 -0.41 7.36 -2.39 -0.02 -0.43 16 41 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 43 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -83.21 360.59 5.39 -77.82 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.98 Total: 12.98 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 5.51 Total: -3.97 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -2.15 Total: -86.08 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -0.98 Total: -48.39 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -83.21 5.39 -77.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599152235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.663 kcal (2) G-P(sol) polarization free energy of solvation -83.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds