Wall clock time and date at job start Tue Mar 31 2020 06:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38234 * 119.99994 * 2 1 4 4 C 1.38229 * 119.99631 * 180.02562 * 3 2 1 5 5 C 1.38231 * 120.00675 * 359.95671 * 4 3 2 6 6 C 1.50698 * 120.00687 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.46930 * 89.99802 * 6 5 4 8 8 C 1.42908 * 113.99649 * 180.02562 * 7 6 5 9 9 H 1.08991 * 109.47314 * 29.99857 * 8 7 6 10 10 C 1.53007 * 109.46709 * 269.99800 * 8 7 6 11 11 C 1.50703 * 109.46990 * 150.00225 * 8 7 6 12 12 O 1.21277 * 119.99605 * 4.99999 * 11 8 7 13 13 N 1.34773 * 119.99847 * 184.99691 * 11 8 7 14 14 C 1.46496 * 119.99909 * 180.02562 * 13 11 8 15 15 H 1.09001 * 109.47459 * 35.00135 * 14 13 11 16 16 C 1.53006 * 109.46995 * 275.00159 * 14 13 11 17 17 C 1.50697 * 109.47428 * 154.99906 * 14 13 11 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 14 13 20 20 N 1.31510 * 119.99600 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 120.00227 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.46938 * 59.99973 * 21 19 17 23 23 H 1.48494 * 109.46914 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46873 * 299.99981 * 21 19 17 25 25 C 1.38243 * 119.99797 * 0.27588 * 5 4 3 26 26 C 1.38234 * 119.99838 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47686 * 90.00230 * 1 2 3 28 28 H 1.09004 * 109.47421 * 209.99870 * 1 2 3 29 29 H 1.08996 * 109.47263 * 329.99897 * 1 2 3 30 30 H 1.08001 * 119.99827 * 359.97438 * 3 2 1 31 31 H 1.08008 * 119.99978 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47060 * 330.00139 * 6 5 4 33 33 H 1.09000 * 109.47652 * 210.00224 * 6 5 4 34 34 H 1.09004 * 109.46788 * 179.97438 * 10 8 7 35 35 H 1.08991 * 109.47279 * 300.00079 * 10 8 7 36 36 H 1.09000 * 109.46969 * 60.00467 * 10 8 7 37 37 H 0.97003 * 120.00265 * 359.97438 * 13 11 8 38 38 H 1.09001 * 109.47002 * 299.99701 * 16 14 13 39 39 H 1.08993 * 109.46955 * 60.00138 * 16 14 13 40 40 H 1.09000 * 109.47050 * 179.97438 * 16 14 13 41 41 H 0.97006 * 120.00212 * 179.97438 * 20 19 17 42 42 H 1.07995 * 120.00192 * 179.72971 * 25 5 4 43 43 H 1.08006 * 120.00162 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5804 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0002 6 6 5.7786 -0.0001 -0.0002 7 8 6.2549 0.0003 1.3471 8 6 7.6795 0.0008 1.4599 9 1 8.1118 0.5146 0.6014 10 6 8.1884 -1.4416 1.5005 11 6 8.0829 0.7116 2.7261 12 8 7.2343 1.0923 3.5044 13 7 9.3866 0.9240 2.9936 14 6 9.7788 1.6145 4.2247 15 1 9.0924 1.3444 5.0272 16 6 9.7296 3.1270 3.9989 17 6 11.1796 1.2084 4.6040 18 1 11.7235 0.5065 3.9893 19 6 11.7672 1.7337 5.7353 20 7 11.1050 2.5887 6.4836 21 14 13.5039 1.2308 6.2051 22 1 14.4386 1.5988 5.1115 23 1 13.9012 1.9306 7.4531 24 1 13.5519 -0.2370 6.4245 25 6 3.5805 -1.1973 -0.0050 26 6 2.1981 -1.1972 0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6581 2.1324 -0.0004 31 1 4.1205 2.1324 -0.0010 32 1 6.1420 0.8897 -0.5143 33 1 6.1420 -0.8902 -0.5137 34 1 9.2751 -1.4412 1.5861 35 1 7.7561 -1.9553 2.3591 36 1 7.8966 -1.9556 0.5847 37 1 10.0654 0.6191 2.3712 38 1 10.4161 3.3971 3.1965 39 1 8.7165 3.4206 3.7246 40 1 10.0210 3.6407 4.9151 41 1 11.5182 2.9580 7.2797 42 1 4.1204 -2.1325 -0.0092 43 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599221255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:40 Heat of formation + Delta-G solvation = -71.871689 kcal Electronic energy + Delta-G solvation = -22510.813987 eV Core-core repulsion = 19134.541436 eV Total energy + Delta-G solvation = -3376.272551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.73369 -39.11613 -37.28828 -34.70634 -33.54233 -32.49644 -31.15892 -31.03695 -28.70182 -28.30441 -25.25986 -24.85517 -23.75872 -22.83232 -20.96171 -20.92751 -19.36779 -17.49791 -16.88529 -16.18033 -15.94449 -15.57988 -15.20338 -15.11164 -14.75886 -14.33273 -13.93945 -13.70400 -13.53012 -13.48980 -13.00832 -12.75188 -12.50903 -12.40255 -12.12656 -12.05273 -11.95717 -11.69116 -11.30537 -11.10700 -11.07353 -10.95134 -10.88776 -10.70716 -10.31191 -10.22243 -9.74050 -9.04490 -9.01236 -8.84206 -8.66497 -8.52782 -7.88977 -6.11015 -4.20606 1.12852 1.31766 3.25950 3.28341 3.31607 3.34185 3.40439 3.83098 4.29930 4.44490 4.64129 4.68991 4.87945 4.89895 4.95617 5.05169 5.20591 5.22951 5.24101 5.34631 5.35661 5.39575 5.43220 5.59280 5.60448 5.71175 5.83004 5.94744 5.96275 6.21684 6.28665 6.45684 6.51630 6.83786 6.88647 6.98409 7.15341 7.18238 7.47808 7.59209 7.71253 7.93467 8.16331 8.67588 8.80025 9.15530 9.46901 10.94930 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034716 B = 0.002684 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.351069 B =10427.917894 C =10827.936108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.091 4.091 5 C -0.091 4.091 6 C 0.099 3.901 7 O -0.348 6.348 8 C 0.067 3.933 9 H 0.080 0.920 10 C -0.168 4.168 11 C 0.502 3.498 12 O -0.534 6.534 13 N -0.708 5.708 14 C 0.266 3.734 15 H 0.049 0.951 16 C -0.147 4.147 17 C -0.534 4.534 18 H 0.061 0.939 19 C 0.066 3.934 20 N -0.883 5.883 21 Si 0.902 3.098 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.094 4.094 26 C -0.126 4.126 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.388 0.612 38 H 0.026 0.974 39 H 0.014 0.986 40 H 0.090 0.910 41 H 0.265 0.735 42 H 0.123 0.877 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.803 -6.458 -16.863 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.109 4.109 5 C -0.091 4.091 6 C 0.023 3.977 7 O -0.267 6.267 8 C 0.006 3.994 9 H 0.097 0.903 10 C -0.226 4.226 11 C 0.285 3.715 12 O -0.410 6.410 13 N -0.358 5.358 14 C 0.164 3.836 15 H 0.066 0.934 16 C -0.206 4.206 17 C -0.572 4.572 18 H 0.079 0.921 19 C -0.138 4.138 20 N -0.521 5.521 21 Si 0.730 3.270 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.112 4.112 26 C -0.144 4.144 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.220 0.780 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.141 0.859 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.520 -6.048 -15.928 22.385 hybrid contribution 1.532 -0.369 -0.223 1.592 sum -12.988 -6.416 -16.151 21.696 Atomic orbital electron populations 1.20795 0.91270 1.02857 1.02171 1.19957 0.96058 0.93298 0.99181 1.21016 0.94064 0.97595 1.01540 1.21089 0.94193 0.97752 0.97868 1.19567 0.94178 0.93583 1.01749 1.21387 0.90684 1.00694 0.84967 1.88162 1.19080 1.94932 1.24481 1.22037 0.82783 0.96794 0.97805 0.90264 1.22204 1.01986 0.95317 1.03044 1.20149 0.83825 0.80332 0.87157 1.90678 1.50330 1.51167 1.48841 1.46469 1.05210 1.58574 1.25504 1.18740 0.95466 0.88518 0.80843 0.93361 1.22083 0.96851 0.99412 1.02251 1.21168 0.98946 1.27042 1.10051 0.92114 1.24897 0.98193 0.94742 0.95926 1.69896 1.37302 1.29482 1.15376 0.86496 0.83933 0.78720 0.77862 1.20176 1.21139 1.20182 1.21037 0.94156 0.97528 0.98497 1.20991 0.94047 0.97523 1.01827 0.91254 0.91549 0.91501 0.85976 0.85790 0.92470 0.92499 0.90713 0.91126 0.91951 0.78019 0.95473 0.96648 0.89115 0.92505 0.85936 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.00 0.36 -0.47 16 2 C -0.08 -0.86 5.88 -104.63 -0.62 -1.48 16 3 C -0.12 -1.35 9.70 -39.59 -0.38 -1.73 16 4 C -0.09 -1.11 9.70 -39.59 -0.38 -1.49 16 5 C -0.09 -1.14 5.51 -104.62 -0.58 -1.72 16 6 C 0.10 1.22 5.87 36.00 0.21 1.43 16 7 O -0.35 -5.81 9.51 -55.09 -0.52 -6.34 16 8 C 0.07 1.04 3.13 -27.88 -0.09 0.96 16 9 H 0.08 1.00 7.79 -51.93 -0.40 0.60 16 10 C -0.17 -2.15 9.48 37.16 0.35 -1.79 16 11 C 0.50 10.54 7.14 -10.99 -0.08 10.46 16 12 O -0.53 -13.86 16.17 -14.30 -0.23 -14.09 16 13 N -0.71 -14.92 5.03 -54.93 -0.28 -15.20 16 14 C 0.27 6.88 2.56 -69.08 -0.18 6.70 16 15 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 16 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 17 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 20 N -0.88 -25.09 11.32 55.43 0.63 -24.47 16 21 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C -0.09 -1.07 9.70 -39.58 -0.38 -1.45 16 26 C -0.13 -1.30 9.70 -39.58 -0.38 -1.68 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.06 0.63 8.03 -51.93 -0.42 0.21 16 33 H 0.06 0.57 7.81 -51.93 -0.41 0.16 16 34 H 0.07 0.87 7.92 -51.93 -0.41 0.46 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 37 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -33.12 362.98 -9.01 -42.14 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.86 Total: 5.29 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -2.20 Total: -8.43 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.35 Total: -39.66 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.76 Total: -20.43 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.12 -9.01 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599221255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.736 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds