Wall clock time and date at job start Tue Mar 31 2020 06:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38234 * 119.99994 * 2 1 4 4 C 1.38229 * 119.99631 * 180.02562 * 3 2 1 5 5 C 1.38231 * 120.00675 * 359.95671 * 4 3 2 6 6 C 1.50698 * 120.00687 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.46930 * 89.99802 * 6 5 4 8 8 C 1.42908 * 113.99649 * 180.02562 * 7 6 5 9 9 H 1.08991 * 109.47314 * 29.99857 * 8 7 6 10 10 C 1.53007 * 109.46709 * 269.99800 * 8 7 6 11 11 C 1.50703 * 109.46990 * 150.00225 * 8 7 6 12 12 O 1.21277 * 119.99605 * 4.99999 * 11 8 7 13 13 N 1.34773 * 119.99847 * 184.99691 * 11 8 7 14 14 C 1.46496 * 119.99909 * 180.02562 * 13 11 8 15 15 H 1.09001 * 109.47459 * 35.00135 * 14 13 11 16 16 C 1.53006 * 109.46995 * 275.00159 * 14 13 11 17 17 C 1.50697 * 109.47428 * 154.99906 * 14 13 11 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 14 13 20 20 N 1.31510 * 119.99600 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 120.00227 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.46938 * 59.99973 * 21 19 17 23 23 H 1.48494 * 109.46914 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46873 * 299.99981 * 21 19 17 25 25 C 1.38243 * 119.99797 * 0.27588 * 5 4 3 26 26 C 1.38234 * 119.99838 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47686 * 90.00230 * 1 2 3 28 28 H 1.09004 * 109.47421 * 209.99870 * 1 2 3 29 29 H 1.08996 * 109.47263 * 329.99897 * 1 2 3 30 30 H 1.08001 * 119.99827 * 359.97438 * 3 2 1 31 31 H 1.08008 * 119.99978 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47060 * 330.00139 * 6 5 4 33 33 H 1.09000 * 109.47652 * 210.00224 * 6 5 4 34 34 H 1.09004 * 109.46788 * 179.97438 * 10 8 7 35 35 H 1.08991 * 109.47279 * 300.00079 * 10 8 7 36 36 H 1.09000 * 109.46969 * 60.00467 * 10 8 7 37 37 H 0.97003 * 120.00265 * 359.97438 * 13 11 8 38 38 H 1.09001 * 109.47002 * 299.99701 * 16 14 13 39 39 H 1.08993 * 109.46955 * 60.00138 * 16 14 13 40 40 H 1.09000 * 109.47050 * 179.97438 * 16 14 13 41 41 H 0.97006 * 120.00212 * 179.97438 * 20 19 17 42 42 H 1.07995 * 120.00192 * 179.72971 * 25 5 4 43 43 H 1.08006 * 120.00162 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5804 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0002 6 6 5.7786 -0.0001 -0.0002 7 8 6.2549 0.0003 1.3471 8 6 7.6795 0.0008 1.4599 9 1 8.1118 0.5146 0.6014 10 6 8.1884 -1.4416 1.5005 11 6 8.0829 0.7116 2.7261 12 8 7.2343 1.0923 3.5044 13 7 9.3866 0.9240 2.9936 14 6 9.7788 1.6145 4.2247 15 1 9.0924 1.3444 5.0272 16 6 9.7296 3.1270 3.9989 17 6 11.1796 1.2084 4.6040 18 1 11.7235 0.5065 3.9893 19 6 11.7672 1.7337 5.7353 20 7 11.1050 2.5887 6.4836 21 14 13.5039 1.2308 6.2051 22 1 14.4386 1.5988 5.1115 23 1 13.9012 1.9306 7.4531 24 1 13.5519 -0.2370 6.4245 25 6 3.5805 -1.1973 -0.0050 26 6 2.1981 -1.1972 0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6581 2.1324 -0.0004 31 1 4.1205 2.1324 -0.0010 32 1 6.1420 0.8897 -0.5143 33 1 6.1420 -0.8902 -0.5137 34 1 9.2751 -1.4412 1.5861 35 1 7.7561 -1.9553 2.3591 36 1 7.8966 -1.9556 0.5847 37 1 10.0654 0.6191 2.3712 38 1 10.4161 3.3971 3.1965 39 1 8.7165 3.4206 3.7246 40 1 10.0210 3.6407 4.9151 41 1 11.5182 2.9580 7.2797 42 1 4.1204 -2.1325 -0.0092 43 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599221255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:40 Heat of formation + Delta-G solvation = -91.849811 kcal Electronic energy + Delta-G solvation = -22511.680304 eV Core-core repulsion = 19134.541436 eV Total energy + Delta-G solvation = -3377.138867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.95181 -40.31764 -38.58027 -36.65827 -34.56679 -34.22732 -32.48994 -31.84722 -30.41416 -29.20773 -27.35354 -25.85244 -24.96260 -23.64860 -22.75701 -21.75266 -21.14173 -19.14244 -18.08151 -17.66026 -17.09906 -16.89993 -16.70105 -16.27527 -15.96881 -15.77789 -15.11934 -15.07124 -14.59810 -14.43647 -14.31074 -14.14856 -13.70797 -13.66504 -13.37582 -13.11200 -13.00563 -12.88072 -12.84242 -12.78046 -12.72099 -12.36916 -12.26403 -12.14510 -11.86546 -11.81670 -11.12910 -10.93898 -10.61222 -10.36852 -9.84220 -9.78009 -9.51702 -8.16987 -6.35180 0.28633 0.48697 1.45679 1.48345 1.56045 1.76036 2.10559 2.43045 2.77048 3.13106 3.24454 3.77416 3.85716 3.92040 3.99845 4.07901 4.11735 4.16427 4.26130 4.38343 4.58993 4.62783 4.72002 4.73198 4.83119 4.83981 4.84941 4.90231 4.94662 5.07995 5.17017 5.21583 5.27334 5.41643 5.46868 5.59774 5.66199 5.66409 5.67776 5.87561 6.08380 6.09218 6.16666 6.72228 6.95730 7.32249 7.54496 8.89366 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034716 B = 0.002684 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.351069 B =10427.917894 C =10827.936108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.113 4.113 5 C -0.115 4.115 6 C 0.096 3.904 7 O -0.384 6.384 8 C 0.078 3.922 9 H 0.117 0.883 10 C -0.161 4.161 11 C 0.494 3.506 12 O -0.593 6.593 13 N -0.699 5.699 14 C 0.271 3.729 15 H -0.006 1.006 16 C -0.134 4.134 17 C -0.545 4.545 18 H 0.078 0.922 19 C 0.011 3.989 20 N -0.920 5.920 21 Si 0.976 3.024 22 H -0.262 1.262 23 H -0.288 1.288 24 H -0.270 1.270 25 C -0.104 4.104 26 C -0.133 4.133 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.137 0.863 31 H 0.122 0.878 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.407 0.593 38 H 0.044 0.956 39 H 0.008 0.992 40 H 0.067 0.933 41 H 0.265 0.735 42 H 0.137 0.863 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.081 -8.089 -19.065 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.154 4.154 4 C -0.131 4.131 5 C -0.115 4.115 6 C 0.021 3.979 7 O -0.303 6.303 8 C 0.017 3.983 9 H 0.134 0.866 10 C -0.219 4.219 11 C 0.281 3.719 12 O -0.474 6.474 13 N -0.350 5.350 14 C 0.167 3.833 15 H 0.011 0.989 16 C -0.193 4.193 17 C -0.583 4.583 18 H 0.096 0.904 19 C -0.189 4.189 20 N -0.558 5.558 21 Si 0.800 3.200 22 H -0.186 1.186 23 H -0.214 1.214 24 H -0.195 1.195 25 C -0.122 4.122 26 C -0.151 4.151 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.155 0.845 31 H 0.140 0.860 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.243 0.757 38 H 0.063 0.937 39 H 0.027 0.973 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.155 0.845 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.782 -7.702 -18.189 24.085 hybrid contribution 1.184 0.152 0.451 1.276 sum -12.598 -7.550 -17.739 23.030 Atomic orbital electron populations 1.20847 0.89172 1.03592 1.03305 1.20361 0.97724 0.92999 0.98015 1.21290 0.93825 0.98807 1.01508 1.21279 0.95085 0.97887 0.98820 1.19779 0.94634 0.94160 1.02942 1.21613 0.90610 1.02516 0.83177 1.88123 1.19526 1.95189 1.27450 1.21993 0.83022 0.98017 0.95261 0.86567 1.22205 1.02551 0.93191 1.03949 1.21273 0.82831 0.79323 0.88512 1.90646 1.51809 1.53571 1.51375 1.46182 1.06267 1.58112 1.24395 1.18346 0.94350 0.89108 0.81468 0.98858 1.21905 0.96716 0.99065 1.01588 1.21507 0.99036 1.27283 1.10521 0.90429 1.25863 1.02564 0.94586 0.95839 1.70062 1.39235 1.30666 1.15821 0.85342 0.78665 0.78375 0.77616 1.18615 1.21377 1.19507 1.21310 0.94871 0.97741 0.98284 1.21345 0.93977 0.98631 1.01142 0.89803 0.90581 0.91036 0.84524 0.86036 0.91462 0.89667 0.89377 0.93350 0.88303 0.75684 0.93684 0.97301 0.91459 0.92560 0.84486 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 2 C -0.09 -1.74 5.88 -19.87 -0.12 -1.86 16 3 C -0.14 -2.91 9.70 22.27 0.22 -2.69 16 4 C -0.11 -2.77 9.70 22.27 0.22 -2.55 16 5 C -0.12 -2.82 5.51 -19.87 -0.11 -2.93 16 6 C 0.10 2.22 5.87 71.24 0.42 2.64 16 7 O -0.38 -12.53 9.51 -129.99 -1.24 -13.77 16 8 C 0.08 2.29 3.13 29.85 0.09 2.38 16 9 H 0.12 2.55 7.79 -2.39 -0.02 2.53 16 10 C -0.16 -3.70 9.48 71.98 0.68 -3.02 16 11 C 0.49 20.95 7.14 87.66 0.63 21.58 16 12 O -0.59 -32.25 16.17 15.97 0.26 -31.99 16 13 N -0.70 -29.36 5.03 -446.10 -2.24 -31.61 16 14 C 0.27 14.37 2.56 44.25 0.11 14.48 16 15 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 16 C -0.13 -6.96 9.26 71.98 0.67 -6.30 16 17 C -0.55 -28.87 8.73 25.60 0.22 -28.65 16 18 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 19 C 0.01 0.61 5.30 84.66 0.45 1.06 16 20 N -0.92 -53.48 11.32 21.45 0.24 -53.24 16 21 Si 0.98 41.88 29.54 68.60 2.03 43.91 16 22 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 23 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 C -0.10 -2.24 9.70 22.27 0.22 -2.02 16 26 C -0.13 -2.54 9.70 22.27 0.22 -2.33 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 29 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 30 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 31 H 0.12 2.87 8.06 -2.91 -0.02 2.84 16 32 H 0.07 1.37 8.03 -2.39 -0.02 1.35 16 33 H 0.09 1.43 7.81 -2.39 -0.02 1.41 16 34 H 0.09 1.77 7.92 -2.38 -0.02 1.76 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 1.57 7.87 -2.39 -0.02 1.55 16 37 H 0.41 13.74 8.32 -92.71 -0.77 12.97 16 38 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 41 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 42 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 43 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -75.32 362.98 3.89 -71.43 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.22 Total: 26.18 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 4.62 Total: -10.91 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -2.00 Total: -84.85 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.98 Total: -45.76 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -75.32 3.89 -71.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599221255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.421 kcal (2) G-P(sol) polarization free energy of solvation -75.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds