Wall clock time and date at job start Tue Mar 31 2020 06:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38232 * 120.00111 * 2 1 4 4 C 1.38234 * 120.00017 * 179.97438 * 3 2 1 5 5 C 1.38239 * 120.00208 * 359.96250 * 4 3 2 6 6 C 1.50693 * 120.00422 * 180.02562 * 5 4 3 7 7 O 1.42899 * 109.47318 * 89.99558 * 6 5 4 8 8 C 1.42899 * 114.00313 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.47031 * 329.99798 * 8 7 6 10 10 C 1.53002 * 109.47367 * 89.99884 * 8 7 6 11 11 C 1.50696 * 109.47365 * 210.00225 * 8 7 6 12 12 O 1.21287 * 120.00121 * 354.99547 * 11 8 7 13 13 N 1.34777 * 120.00198 * 174.99894 * 11 8 7 14 14 C 1.46506 * 120.00033 * 180.02562 * 13 11 8 15 15 H 1.08998 * 109.46566 * 324.99334 * 14 13 11 16 16 C 1.52997 * 109.47289 * 84.99600 * 14 13 11 17 17 C 1.50697 * 109.47015 * 205.00057 * 14 13 11 18 18 H 1.07998 * 120.00039 * 359.97438 * 17 14 13 19 19 C 1.37880 * 119.99815 * 179.97438 * 17 14 13 20 20 N 1.31517 * 119.99524 * 179.97438 * 19 17 14 21 21 Si 1.86794 * 120.00267 * 359.97438 * 19 17 14 22 22 H 1.48506 * 109.46589 * 89.99875 * 21 19 17 23 23 H 1.48490 * 109.47303 * 209.99928 * 21 19 17 24 24 H 1.48497 * 109.46869 * 330.00523 * 21 19 17 25 25 C 1.38235 * 119.99475 * 0.26744 * 5 4 3 26 26 C 1.38238 * 119.99570 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46865 * 89.99957 * 1 2 3 28 28 H 1.08993 * 109.47249 * 210.00055 * 1 2 3 29 29 H 1.09000 * 109.46959 * 330.00325 * 1 2 3 30 30 H 1.07998 * 120.00205 * 359.97438 * 3 2 1 31 31 H 1.07996 * 120.00256 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.46953 * 329.99623 * 6 5 4 33 33 H 1.09002 * 109.47252 * 209.99824 * 6 5 4 34 34 H 1.09002 * 109.47027 * 299.99768 * 10 8 7 35 35 H 1.08993 * 109.47190 * 60.00221 * 10 8 7 36 36 H 1.08998 * 109.46856 * 180.02562 * 10 8 7 37 37 H 0.96992 * 119.99904 * 359.97438 * 13 11 8 38 38 H 1.09002 * 109.47153 * 179.97438 * 16 14 13 39 39 H 1.09001 * 109.46832 * 60.00146 * 16 14 13 40 40 H 1.09004 * 109.47261 * 300.00128 * 16 14 13 41 41 H 0.97001 * 119.99599 * 179.97438 * 20 19 17 42 42 H 1.08009 * 119.99799 * 179.73041 * 25 5 4 43 43 H 1.07994 * 120.00306 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2718 -0.0001 0.0019 6 6 5.7787 -0.0002 0.0030 7 8 6.2540 0.0008 1.3506 8 6 7.6785 0.0014 1.4646 9 1 8.1118 -0.5128 0.6067 10 6 8.1864 1.4441 1.5044 11 6 8.0814 -0.7082 2.7315 12 8 7.2325 -1.0890 3.5096 13 7 9.3851 -0.9195 3.0002 14 6 9.7767 -1.6098 4.2316 15 1 9.0894 -1.3403 5.0334 16 6 9.7291 -3.1223 4.0057 17 6 11.1768 -1.2026 4.6122 18 1 11.7207 -0.5002 3.9980 19 6 11.7635 -1.7267 5.7446 20 7 12.9855 -1.3716 6.0764 21 14 10.8226 -2.9410 6.8073 22 1 11.0868 -4.3230 6.3320 23 1 11.2648 -2.8099 8.2187 24 1 9.3681 -2.6557 6.7156 25 6 3.5805 -1.1972 -0.0030 26 6 2.1981 -1.1972 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6583 2.1324 -0.0004 31 1 4.1206 2.1323 0.0001 32 1 6.1424 0.8894 -0.5112 33 1 6.1424 -0.8905 -0.5099 34 1 7.8950 1.9573 0.5879 35 1 7.7531 1.9583 2.3622 36 1 9.2729 1.4444 1.5909 37 1 10.0640 -0.6153 2.3778 38 1 10.0209 -3.6359 4.9218 39 1 10.4165 -3.3917 3.2039 40 1 8.7163 -3.4168 3.7304 41 1 13.3981 -1.7401 6.8732 42 1 4.1205 -2.1326 -0.0063 43 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599221258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:50 Heat of formation + Delta-G solvation = -63.721872 kcal Electronic energy + Delta-G solvation = -22588.593889 eV Core-core repulsion = 19212.674740 eV Total energy + Delta-G solvation = -3375.919148 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.80871 -39.25814 -37.42097 -34.92337 -33.60175 -32.51151 -31.39726 -31.08460 -29.42901 -28.44318 -25.23512 -24.90935 -23.87452 -22.87951 -21.07145 -20.97706 -19.56849 -17.59695 -16.94106 -16.38723 -15.99883 -15.85766 -15.31250 -15.26014 -14.77902 -14.45492 -13.98866 -13.91133 -13.56930 -13.47720 -13.09115 -12.90908 -12.79119 -12.51783 -12.24119 -12.19733 -12.09207 -12.01796 -11.81226 -11.40701 -11.21875 -11.10964 -10.96901 -10.79864 -10.17992 -9.83865 -9.65735 -9.22868 -9.05921 -8.95666 -8.75457 -8.72228 -8.14609 -6.20812 -4.23217 1.08002 1.27109 3.19763 3.23483 3.25262 3.36529 3.42071 3.73785 4.28170 4.32669 4.59574 4.63593 4.81262 4.85298 4.90669 4.98648 5.13281 5.16546 5.18397 5.26209 5.29975 5.31880 5.36512 5.55305 5.55911 5.67247 5.75785 5.90350 5.91597 6.17425 6.23991 6.31941 6.38748 6.41286 6.46580 6.56795 6.83878 6.86372 7.06082 7.23440 7.31325 7.52483 8.16338 8.52441 8.76286 8.95360 9.40281 10.91272 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029420 B = 0.002892 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.490983 B = 9680.288954 C =10214.922386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.126 4.126 4 C -0.094 4.094 5 C -0.091 4.091 6 C 0.099 3.901 7 O -0.349 6.349 8 C 0.069 3.931 9 H 0.082 0.918 10 C -0.169 4.169 11 C 0.504 3.496 12 O -0.535 6.535 13 N -0.700 5.700 14 C 0.238 3.762 15 H 0.049 0.951 16 C -0.162 4.162 17 C -0.534 4.534 18 H 0.080 0.920 19 C 0.078 3.922 20 N -0.893 5.893 21 Si 0.885 3.115 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.261 1.261 25 C -0.091 4.091 26 C -0.124 4.124 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.394 0.606 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.036 0.964 41 H 0.267 0.733 42 H 0.124 0.876 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.483 3.938 -16.629 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.084 4.084 3 C -0.144 4.144 4 C -0.112 4.112 5 C -0.091 4.091 6 C 0.023 3.977 7 O -0.267 6.267 8 C 0.007 3.993 9 H 0.100 0.900 10 C -0.227 4.227 11 C 0.288 3.712 12 O -0.411 6.411 13 N -0.350 5.350 14 C 0.134 3.866 15 H 0.066 0.934 16 C -0.220 4.220 17 C -0.572 4.572 18 H 0.098 0.902 19 C -0.126 4.126 20 N -0.529 5.529 21 Si 0.715 3.285 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.186 1.186 25 C -0.109 4.109 26 C -0.142 4.142 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.228 0.772 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.142 0.858 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.063 3.639 -15.751 24.994 hybrid contribution 0.286 -0.550 0.121 0.631 sum -18.777 3.089 -15.630 24.626 Atomic orbital electron populations 1.20799 0.91251 1.02863 1.02205 1.19964 0.96076 0.93293 0.99115 1.20997 0.94055 0.97545 1.01776 1.21042 0.94160 0.97553 0.98416 1.19560 0.94150 0.93588 1.01834 1.21394 0.90705 1.00785 0.84828 1.88153 1.18990 1.94946 1.24627 1.21989 0.82898 0.96911 0.97461 0.90044 1.22215 1.02163 0.95107 1.03182 1.20218 0.83580 0.80119 0.87307 1.90678 1.50349 1.51177 1.48932 1.46123 1.05518 1.58509 1.24862 1.19103 0.96827 0.87944 0.82688 0.93356 1.22455 0.99382 0.99276 1.00858 1.21027 0.97149 1.28132 1.10873 0.90161 1.24831 0.94669 0.96155 0.96915 1.69869 1.13350 1.43779 1.25952 0.86877 0.81215 0.81410 0.79025 1.20299 1.22145 1.18610 1.21086 0.94193 0.97715 0.97948 1.21019 0.94063 0.97601 1.01563 0.91221 0.91505 0.91529 0.86023 0.85894 0.92391 0.92425 0.91799 0.91071 0.90525 0.77223 0.93421 0.92805 0.94540 0.92289 0.85825 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.08 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.13 -1.24 9.70 -39.59 -0.38 -1.63 16 4 C -0.09 -1.02 9.70 -39.58 -0.38 -1.40 16 5 C -0.09 -1.09 5.51 -104.63 -0.58 -1.67 16 6 C 0.10 1.16 5.87 36.00 0.21 1.37 16 7 O -0.35 -5.53 9.51 -55.09 -0.52 -6.05 16 8 C 0.07 1.01 3.13 -27.88 -0.09 0.92 16 9 H 0.08 0.95 7.79 -51.93 -0.40 0.55 16 10 C -0.17 -2.07 9.48 37.16 0.35 -1.72 16 11 C 0.50 9.96 7.14 -10.99 -0.08 9.88 16 12 O -0.53 -13.03 16.17 -14.31 -0.23 -13.27 16 13 N -0.70 -13.98 5.03 -54.93 -0.28 -14.25 16 14 C 0.24 5.74 2.15 -69.08 -0.15 5.59 16 15 H 0.05 1.30 6.63 -51.93 -0.34 0.96 16 16 C -0.16 -3.66 8.97 37.16 0.33 -3.33 16 17 C -0.53 -14.42 9.31 -34.44 -0.32 -14.75 16 18 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 19 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 20 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 21 Si 0.89 21.98 24.38 -169.99 -4.14 17.83 16 22 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.26 -6.51 6.53 56.52 0.37 -6.14 16 25 C -0.09 -1.06 9.70 -39.58 -0.38 -1.44 16 26 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.06 0.55 7.81 -51.93 -0.41 0.14 16 33 H 0.06 0.59 8.03 -51.93 -0.42 0.17 16 34 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.87 7.93 -51.93 -0.41 0.46 16 37 H 0.39 6.73 8.32 -40.82 -0.34 6.39 16 38 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -33.84 356.17 -7.96 -41.80 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.72 Total: 3.86 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -2.20 Total: -9.62 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.50 Total: -39.91 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.76 Total: -19.32 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.14 Total: 17.83 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.84 -7.96 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599221258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.925 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds