Wall clock time and date at job start Tue Mar 31 2020 06:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38232 * 120.00111 * 2 1 4 4 C 1.38234 * 120.00017 * 179.97438 * 3 2 1 5 5 C 1.38239 * 120.00208 * 359.96250 * 4 3 2 6 6 C 1.50693 * 120.00422 * 180.02562 * 5 4 3 7 7 O 1.42899 * 109.47318 * 89.99558 * 6 5 4 8 8 C 1.42899 * 114.00313 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.47031 * 329.99798 * 8 7 6 10 10 C 1.53002 * 109.47367 * 89.99884 * 8 7 6 11 11 C 1.50696 * 109.47365 * 210.00225 * 8 7 6 12 12 O 1.21287 * 120.00121 * 354.99547 * 11 8 7 13 13 N 1.34777 * 120.00198 * 174.99894 * 11 8 7 14 14 C 1.46506 * 120.00033 * 180.02562 * 13 11 8 15 15 H 1.08998 * 109.46566 * 324.99334 * 14 13 11 16 16 C 1.52997 * 109.47289 * 84.99600 * 14 13 11 17 17 C 1.50697 * 109.47015 * 205.00057 * 14 13 11 18 18 H 1.07998 * 120.00039 * 359.97438 * 17 14 13 19 19 C 1.37880 * 119.99815 * 179.97438 * 17 14 13 20 20 N 1.31517 * 119.99524 * 179.97438 * 19 17 14 21 21 Si 1.86794 * 120.00267 * 359.97438 * 19 17 14 22 22 H 1.48506 * 109.46589 * 89.99875 * 21 19 17 23 23 H 1.48490 * 109.47303 * 209.99928 * 21 19 17 24 24 H 1.48497 * 109.46869 * 330.00523 * 21 19 17 25 25 C 1.38235 * 119.99475 * 0.26744 * 5 4 3 26 26 C 1.38238 * 119.99570 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46865 * 89.99957 * 1 2 3 28 28 H 1.08993 * 109.47249 * 210.00055 * 1 2 3 29 29 H 1.09000 * 109.46959 * 330.00325 * 1 2 3 30 30 H 1.07998 * 120.00205 * 359.97438 * 3 2 1 31 31 H 1.07996 * 120.00256 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.46953 * 329.99623 * 6 5 4 33 33 H 1.09002 * 109.47252 * 209.99824 * 6 5 4 34 34 H 1.09002 * 109.47027 * 299.99768 * 10 8 7 35 35 H 1.08993 * 109.47190 * 60.00221 * 10 8 7 36 36 H 1.08998 * 109.46856 * 180.02562 * 10 8 7 37 37 H 0.96992 * 119.99904 * 359.97438 * 13 11 8 38 38 H 1.09002 * 109.47153 * 179.97438 * 16 14 13 39 39 H 1.09001 * 109.46832 * 60.00146 * 16 14 13 40 40 H 1.09004 * 109.47261 * 300.00128 * 16 14 13 41 41 H 0.97001 * 119.99599 * 179.97438 * 20 19 17 42 42 H 1.08009 * 119.99799 * 179.73041 * 25 5 4 43 43 H 1.07994 * 120.00306 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2718 -0.0001 0.0019 6 6 5.7787 -0.0002 0.0030 7 8 6.2540 0.0008 1.3506 8 6 7.6785 0.0014 1.4646 9 1 8.1118 -0.5128 0.6067 10 6 8.1864 1.4441 1.5044 11 6 8.0814 -0.7082 2.7315 12 8 7.2325 -1.0890 3.5096 13 7 9.3851 -0.9195 3.0002 14 6 9.7767 -1.6098 4.2316 15 1 9.0894 -1.3403 5.0334 16 6 9.7291 -3.1223 4.0057 17 6 11.1768 -1.2026 4.6122 18 1 11.7207 -0.5002 3.9980 19 6 11.7635 -1.7267 5.7446 20 7 12.9855 -1.3716 6.0764 21 14 10.8226 -2.9410 6.8073 22 1 11.0868 -4.3230 6.3320 23 1 11.2648 -2.8099 8.2187 24 1 9.3681 -2.6557 6.7156 25 6 3.5805 -1.1972 -0.0030 26 6 2.1981 -1.1972 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6583 2.1324 -0.0004 31 1 4.1206 2.1323 0.0001 32 1 6.1424 0.8894 -0.5112 33 1 6.1424 -0.8905 -0.5099 34 1 7.8950 1.9573 0.5879 35 1 7.7531 1.9583 2.3622 36 1 9.2729 1.4444 1.5909 37 1 10.0640 -0.6153 2.3778 38 1 10.0209 -3.6359 4.9218 39 1 10.4165 -3.3917 3.2039 40 1 8.7163 -3.4168 3.7304 41 1 13.3981 -1.7401 6.8732 42 1 4.1205 -2.1326 -0.0063 43 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599221258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:49 Heat of formation + Delta-G solvation = -85.348013 kcal Electronic energy + Delta-G solvation = -22589.531669 eV Core-core repulsion = 19212.674740 eV Total energy + Delta-G solvation = -3376.856928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.01602 -40.33735 -38.62374 -36.77491 -34.58521 -34.28635 -32.78446 -31.84618 -30.98869 -29.21758 -27.24485 -25.89283 -25.00562 -23.64812 -22.77373 -21.75265 -21.23229 -19.25685 -18.08826 -18.02339 -17.17123 -17.01823 -16.69709 -16.27518 -15.95661 -15.88825 -15.30083 -15.02824 -14.83360 -14.59602 -14.31157 -14.16724 -14.12905 -13.75219 -13.64408 -13.39348 -13.17746 -13.11049 -12.85663 -12.79941 -12.78513 -12.36669 -12.15364 -11.86562 -11.82593 -11.62378 -11.29513 -10.95240 -10.87847 -10.41527 -9.91288 -9.84129 -9.51767 -8.38835 -6.44183 0.28569 0.48770 1.25935 1.34859 1.44303 1.68696 2.04811 2.25491 2.72883 2.97284 3.21728 3.73248 3.85824 3.89191 3.98377 4.06787 4.11849 4.15640 4.25975 4.38851 4.43575 4.54229 4.59050 4.62806 4.68732 4.72616 4.81579 4.83592 4.84801 4.94649 4.98337 5.17119 5.21452 5.27188 5.30040 5.41193 5.46932 5.61336 5.66224 5.67885 6.04524 6.10209 6.19949 6.57108 6.85211 7.18813 7.42609 8.76105 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029420 B = 0.002892 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.490983 B = 9680.288954 C =10214.922386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.134 4.134 4 C -0.105 4.105 5 C -0.115 4.115 6 C 0.096 3.904 7 O -0.382 6.382 8 C 0.078 3.922 9 H 0.119 0.881 10 C -0.164 4.164 11 C 0.499 3.501 12 O -0.587 6.587 13 N -0.694 5.694 14 C 0.241 3.759 15 H 0.018 0.982 16 C -0.155 4.155 17 C -0.530 4.530 18 H 0.062 0.938 19 C 0.031 3.969 20 N -0.931 5.931 21 Si 0.936 3.064 22 H -0.258 1.258 23 H -0.292 1.292 24 H -0.267 1.267 25 C -0.111 4.111 26 C -0.137 4.137 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.410 0.590 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.270 0.730 42 H 0.124 0.876 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.688 4.052 -18.355 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.152 4.152 4 C -0.123 4.123 5 C -0.115 4.115 6 C 0.021 3.979 7 O -0.301 6.301 8 C 0.017 3.983 9 H 0.136 0.864 10 C -0.221 4.221 11 C 0.286 3.714 12 O -0.467 6.467 13 N -0.345 5.345 14 C 0.137 3.863 15 H 0.036 0.964 16 C -0.213 4.213 17 C -0.568 4.568 18 H 0.080 0.920 19 C -0.169 4.169 20 N -0.570 5.570 21 Si 0.763 3.237 22 H -0.184 1.184 23 H -0.219 1.219 24 H -0.192 1.192 25 C -0.129 4.129 26 C -0.154 4.154 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.161 0.839 31 H 0.154 0.846 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.246 0.754 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.142 0.858 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.255 3.761 -17.523 27.045 hybrid contribution 0.598 -0.517 0.603 0.995 sum -19.656 3.244 -16.920 26.138 Atomic orbital electron populations 1.20849 0.89240 1.03583 1.03279 1.20359 0.97688 0.93031 0.98028 1.21336 0.94008 0.98621 1.01205 1.21308 0.94852 0.97803 0.98295 1.19772 0.94634 0.94123 1.02944 1.21611 0.90573 1.02570 0.83150 1.88114 1.19384 1.95179 1.27429 1.21962 0.83120 0.97863 0.95322 0.86351 1.22215 1.02463 0.93426 1.04020 1.21213 0.82515 0.79141 0.88548 1.90648 1.51583 1.53312 1.51153 1.45928 1.06541 1.58239 1.23827 1.18766 0.94270 0.89476 0.83827 0.96447 1.22347 1.00210 0.97670 1.01114 1.21222 0.98092 1.27143 1.10368 0.91995 1.25513 0.95327 0.97878 0.98231 1.69964 1.14795 1.45383 1.26852 0.86053 0.79549 0.80406 0.77660 1.18380 1.21907 1.19223 1.21285 0.95015 0.97894 0.98732 1.21298 0.93889 0.98756 1.01500 0.89860 0.90990 0.90639 0.83917 0.84593 0.89822 0.91259 0.88361 0.93225 0.89643 0.75399 0.94085 0.91178 0.93898 0.92025 0.85820 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 71.24 0.71 -0.61 16 2 C -0.09 -1.64 5.88 -19.86 -0.12 -1.76 16 3 C -0.13 -2.44 9.70 22.27 0.22 -2.22 16 4 C -0.10 -2.14 9.70 22.27 0.22 -1.92 16 5 C -0.11 -2.64 5.51 -19.87 -0.11 -2.75 16 6 C 0.10 2.06 5.87 71.23 0.42 2.48 16 7 O -0.38 -11.60 9.51 -129.99 -1.24 -12.84 16 8 C 0.08 2.13 3.13 29.85 0.09 2.22 16 9 H 0.12 2.35 7.79 -2.39 -0.02 2.33 16 10 C -0.16 -3.62 9.48 71.98 0.68 -2.94 16 11 C 0.50 19.43 7.14 87.66 0.63 20.06 16 12 O -0.59 -28.98 16.17 15.94 0.26 -28.72 16 13 N -0.69 -27.22 5.03 -446.09 -2.24 -29.47 16 14 C 0.24 11.64 2.15 44.24 0.10 11.73 16 15 H 0.02 0.96 6.63 -2.39 -0.02 0.95 16 16 C -0.16 -6.86 8.97 71.98 0.65 -6.22 16 17 C -0.53 -28.77 9.31 25.60 0.24 -28.53 16 18 H 0.06 3.52 7.98 -2.91 -0.02 3.50 16 19 C 0.03 1.72 5.45 84.65 0.46 2.18 16 20 N -0.93 -55.56 13.96 21.45 0.30 -55.26 16 21 Si 0.94 45.24 24.38 68.60 1.67 46.91 16 22 H -0.26 -11.67 6.87 99.48 0.68 -10.99 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.27 -13.09 6.53 99.48 0.65 -12.44 16 25 C -0.11 -2.54 9.70 22.27 0.22 -2.32 16 26 C -0.14 -2.72 9.70 22.27 0.22 -2.50 16 27 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 29 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 30 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.08 1.31 7.81 -2.39 -0.02 1.29 16 33 H 0.07 1.28 8.03 -2.39 -0.02 1.26 16 34 H 0.10 1.52 7.87 -2.39 -0.02 1.50 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.73 7.93 -2.39 -0.02 1.71 16 37 H 0.41 13.42 8.32 -92.71 -0.77 12.65 16 38 H 0.04 1.85 3.27 -2.39 -0.01 1.84 16 39 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 43 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -74.19 356.17 3.51 -70.68 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.15 Total: 21.79 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 4.61 Total: -13.10 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -1.94 Total: -84.73 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.98 Total: -41.56 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.67 Total: 46.91 kcal Total: -74.19 3.51 -70.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599221258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.663 kcal (2) G-P(sol) polarization free energy of solvation -74.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds