Wall clock time and date at job start Tue Mar 31 2020 06:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38228 * 120.00207 * 2 1 4 4 C 1.38240 * 119.99718 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.00208 * 359.95910 * 4 3 2 6 6 C 1.50700 * 120.00018 * 180.02562 * 5 4 3 7 7 O 1.42896 * 109.47153 * 90.00026 * 6 5 4 8 8 C 1.42895 * 113.99925 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47109 * 30.00434 * 8 7 6 10 10 C 1.52999 * 109.47266 * 269.99948 * 8 7 6 11 11 C 1.50706 * 109.47247 * 149.99956 * 8 7 6 12 12 O 1.21283 * 119.99503 * 5.00053 * 11 8 7 13 13 N 1.34773 * 120.00081 * 184.72780 * 11 8 7 14 14 C 1.46506 * 119.99968 * 180.02562 * 13 11 8 15 15 C 1.52992 * 109.47161 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47278 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99953 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00439 * 179.97438 * 16 15 14 19 19 N 1.31523 * 119.99907 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47210 * 89.99589 * 20 18 16 22 22 H 1.48504 * 109.47424 * 209.99820 * 20 18 16 23 23 H 1.48502 * 109.46888 * 329.99910 * 20 18 16 24 24 C 1.38238 * 119.99830 * 0.27600 * 5 4 3 25 25 C 1.38233 * 119.99696 * 359.51082 * 24 5 4 26 26 H 1.09000 * 109.47023 * 89.99769 * 1 2 3 27 27 H 1.08992 * 109.47226 * 210.00058 * 1 2 3 28 28 H 1.08998 * 109.46488 * 330.00085 * 1 2 3 29 29 H 1.07994 * 120.00401 * 359.97438 * 3 2 1 30 30 H 1.07999 * 119.99711 * 179.97438 * 4 3 2 31 31 H 1.08994 * 109.46869 * 330.00031 * 6 5 4 32 32 H 1.08995 * 109.46804 * 210.00176 * 6 5 4 33 33 H 1.09002 * 109.47253 * 60.00492 * 10 8 7 34 34 H 1.08999 * 109.46938 * 179.97438 * 10 8 7 35 35 H 1.08995 * 109.47123 * 300.00298 * 10 8 7 36 36 H 0.96998 * 120.00525 * 359.97438 * 13 11 8 37 37 H 1.09004 * 109.46587 * 299.99661 * 14 13 11 38 38 H 1.08998 * 109.47213 * 59.99069 * 14 13 11 39 39 H 1.09004 * 109.47116 * 299.99365 * 15 14 13 40 40 H 1.08993 * 109.47352 * 59.99609 * 15 14 13 41 41 H 0.97000 * 119.99666 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.00117 * 179.72793 * 24 5 4 43 43 H 1.08004 * 119.99577 * 180.25330 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5807 1.1969 0.0005 5 6 4.2718 -0.0002 0.0019 6 6 5.7788 -0.0003 0.0031 7 8 6.2541 0.0006 1.3507 8 6 7.6785 0.0000 1.4646 9 1 8.1118 0.5130 0.6060 10 6 8.1862 -1.4426 1.5065 11 6 8.0815 0.7114 2.7306 12 8 7.2326 1.0934 3.5080 13 7 9.3854 0.9181 3.0016 14 6 9.7772 1.6091 4.2326 15 6 11.3024 1.7118 4.2965 16 6 11.7054 2.4220 5.5630 17 1 10.9493 2.7662 6.2531 18 6 13.0394 2.6325 5.8408 19 7 13.9602 2.2129 5.0006 20 14 13.5389 3.5135 7.4104 21 1 13.7250 2.5197 8.4981 22 1 14.8119 4.2441 7.1843 23 1 12.4770 4.4770 7.7966 24 6 3.5805 -1.1973 -0.0030 25 6 2.1982 -1.1972 0.0009 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3632 0.8900 0.5138 29 1 1.6584 2.1324 -0.0004 30 1 4.1207 2.1322 0.0001 31 1 6.1425 0.8893 -0.5111 32 1 6.1424 -0.8906 -0.5098 33 1 7.8948 -1.9571 0.5908 34 1 9.2728 -1.4430 1.5929 35 1 7.7528 -1.9555 2.3651 36 1 10.0646 0.6087 2.3819 37 1 9.3447 2.6096 4.2409 38 1 9.4146 1.0493 5.0946 39 1 11.7345 0.7111 4.2883 40 1 11.6653 2.2713 3.4344 41 1 14.8987 2.3607 5.1963 42 1 4.1204 -2.1327 -0.0063 43 1 1.6581 -2.1325 0.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599751675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:22 Heat of formation + Delta-G solvation = -78.824734 kcal Electronic energy + Delta-G solvation = -21905.461729 eV Core-core repulsion = 18528.887672 eV Total energy + Delta-G solvation = -3376.574058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.90564 -39.38172 -37.50856 -34.82163 -33.67361 -32.90547 -31.49345 -31.13297 -29.37081 -28.52071 -25.36078 -24.73029 -23.47134 -22.92662 -21.03612 -21.01220 -20.03424 -17.35411 -16.99733 -16.41724 -16.08434 -15.99483 -15.35455 -15.17748 -14.80593 -14.52092 -14.36730 -14.02135 -13.77112 -13.62228 -13.34552 -12.99150 -12.86299 -12.53470 -12.33972 -12.30111 -12.17658 -12.07183 -11.49922 -11.21001 -11.17756 -11.07067 -11.03146 -10.64387 -10.33345 -9.97284 -9.71976 -9.39683 -9.10993 -9.08553 -8.79034 -8.54755 -8.35777 -6.10144 -4.12830 1.02620 1.22313 2.97852 3.08118 3.29356 3.35471 3.39958 3.61402 4.11949 4.41493 4.54411 4.57356 4.71878 4.80387 4.82531 4.88634 4.99239 5.07553 5.11158 5.23609 5.26974 5.28421 5.30496 5.50689 5.51122 5.52484 5.61037 5.85766 5.86692 6.01964 6.18896 6.32414 6.34757 6.36929 6.40899 6.73381 6.78947 6.88260 7.01212 7.51163 7.60601 7.88286 8.00177 8.27404 8.65889 8.93127 9.52034 11.01396 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035573 B = 0.002244 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.922343 B =12476.452663 C =12943.104987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.091 4.091 5 C -0.093 4.093 6 C 0.100 3.900 7 O -0.349 6.349 8 C 0.069 3.931 9 H 0.084 0.916 10 C -0.170 4.170 11 C 0.506 3.494 12 O -0.529 6.529 13 N -0.721 5.721 14 C 0.123 3.877 15 C 0.013 3.987 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.093 4.093 25 C -0.126 4.126 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.397 0.603 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.262 0.738 42 H 0.123 0.877 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.458 -7.610 -15.900 27.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.109 4.109 5 C -0.093 4.093 6 C 0.023 3.977 7 O -0.267 6.267 8 C 0.007 3.993 9 H 0.102 0.898 10 C -0.227 4.227 11 C 0.290 3.710 12 O -0.405 6.405 13 N -0.372 5.372 14 C 0.001 3.999 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.112 4.112 25 C -0.144 4.144 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.230 0.770 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.141 0.859 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.012 -7.320 -15.181 26.936 hybrid contribution 1.000 0.301 0.317 1.091 sum -20.013 -7.018 -14.864 25.898 Atomic orbital electron populations 1.20804 0.91217 1.02889 1.02243 1.19973 0.96107 0.93286 0.98991 1.21024 0.94061 0.97631 1.01504 1.21087 0.94209 0.97710 0.97887 1.19546 0.94068 0.93618 1.02048 1.21406 0.90786 1.00882 0.84606 1.88148 1.18752 1.94943 1.24895 1.21965 0.83179 0.96860 0.97267 0.89795 1.22225 1.02023 0.95071 1.03421 1.20271 0.83255 0.80071 0.87439 1.90699 1.50277 1.50494 1.49018 1.46267 1.06167 1.59438 1.25376 1.21738 0.99072 0.95392 0.83723 1.19325 0.87249 0.97856 0.98043 1.21053 0.92073 1.37465 1.05401 0.92230 1.25000 0.96594 0.95712 0.97027 1.69958 1.00605 1.46620 1.36135 0.86504 0.77989 0.79781 0.83236 1.20554 1.21172 1.19724 1.21036 0.94172 0.97511 0.98441 1.21002 0.94049 0.97564 1.01758 0.91189 0.91514 0.91475 0.85939 0.85797 0.92316 0.92321 0.91543 0.90615 0.91063 0.76959 0.92526 0.92499 0.95893 0.95911 0.92858 0.85913 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.08 -0.77 5.88 -104.62 -0.62 -1.38 16 3 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 4 C -0.09 -0.99 9.70 -39.58 -0.38 -1.38 16 5 C -0.09 -1.04 5.51 -104.62 -0.58 -1.62 16 6 C 0.10 1.07 5.87 36.01 0.21 1.28 16 7 O -0.35 -5.10 9.51 -55.09 -0.52 -5.62 16 8 C 0.07 0.90 3.13 -27.88 -0.09 0.82 16 9 H 0.08 0.87 7.79 -51.93 -0.40 0.47 16 10 C -0.17 -1.80 9.48 37.16 0.35 -1.45 16 11 C 0.51 9.00 7.18 -10.98 -0.08 8.92 16 12 O -0.53 -11.89 16.51 -14.31 -0.24 -12.12 16 13 N -0.72 -12.61 5.51 -60.29 -0.33 -12.94 16 14 C 0.12 2.64 5.61 -4.04 -0.02 2.62 16 15 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 16 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 17 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 20 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.09 -0.95 9.70 -39.58 -0.38 -1.33 16 25 C -0.13 -1.17 9.70 -39.58 -0.38 -1.55 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 28 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.06 0.55 8.03 -51.93 -0.42 0.14 16 32 H 0.06 0.50 7.81 -51.93 -0.41 0.09 16 33 H 0.07 0.55 7.87 -51.93 -0.41 0.15 16 34 H 0.07 0.72 7.90 -51.93 -0.41 0.31 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.40 5.81 8.23 -40.82 -0.34 5.48 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -33.88 367.75 -9.37 -43.25 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.99 Total: 0.91 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.55 Total: -10.13 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.40 Total: -38.22 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.76 Total: -17.75 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.88 -9.37 -43.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599751675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.575 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds