Wall clock time and date at job start Tue Mar 31 2020 06:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38228 * 120.00207 * 2 1 4 4 C 1.38240 * 119.99718 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.00208 * 359.95910 * 4 3 2 6 6 C 1.50700 * 120.00018 * 180.02562 * 5 4 3 7 7 O 1.42896 * 109.47153 * 90.00026 * 6 5 4 8 8 C 1.42895 * 113.99925 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47109 * 30.00434 * 8 7 6 10 10 C 1.52999 * 109.47266 * 269.99948 * 8 7 6 11 11 C 1.50706 * 109.47247 * 149.99956 * 8 7 6 12 12 O 1.21283 * 119.99503 * 5.00053 * 11 8 7 13 13 N 1.34773 * 120.00081 * 184.72780 * 11 8 7 14 14 C 1.46506 * 119.99968 * 180.02562 * 13 11 8 15 15 C 1.52992 * 109.47161 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47278 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99953 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00439 * 179.97438 * 16 15 14 19 19 N 1.31523 * 119.99907 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47210 * 89.99589 * 20 18 16 22 22 H 1.48504 * 109.47424 * 209.99820 * 20 18 16 23 23 H 1.48502 * 109.46888 * 329.99910 * 20 18 16 24 24 C 1.38238 * 119.99830 * 0.27600 * 5 4 3 25 25 C 1.38233 * 119.99696 * 359.51082 * 24 5 4 26 26 H 1.09000 * 109.47023 * 89.99769 * 1 2 3 27 27 H 1.08992 * 109.47226 * 210.00058 * 1 2 3 28 28 H 1.08998 * 109.46488 * 330.00085 * 1 2 3 29 29 H 1.07994 * 120.00401 * 359.97438 * 3 2 1 30 30 H 1.07999 * 119.99711 * 179.97438 * 4 3 2 31 31 H 1.08994 * 109.46869 * 330.00031 * 6 5 4 32 32 H 1.08995 * 109.46804 * 210.00176 * 6 5 4 33 33 H 1.09002 * 109.47253 * 60.00492 * 10 8 7 34 34 H 1.08999 * 109.46938 * 179.97438 * 10 8 7 35 35 H 1.08995 * 109.47123 * 300.00298 * 10 8 7 36 36 H 0.96998 * 120.00525 * 359.97438 * 13 11 8 37 37 H 1.09004 * 109.46587 * 299.99661 * 14 13 11 38 38 H 1.08998 * 109.47213 * 59.99069 * 14 13 11 39 39 H 1.09004 * 109.47116 * 299.99365 * 15 14 13 40 40 H 1.08993 * 109.47352 * 59.99609 * 15 14 13 41 41 H 0.97000 * 119.99666 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.00117 * 179.72793 * 24 5 4 43 43 H 1.08004 * 119.99577 * 180.25330 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5807 1.1969 0.0005 5 6 4.2718 -0.0002 0.0019 6 6 5.7788 -0.0003 0.0031 7 8 6.2541 0.0006 1.3507 8 6 7.6785 0.0000 1.4646 9 1 8.1118 0.5130 0.6060 10 6 8.1862 -1.4426 1.5065 11 6 8.0815 0.7114 2.7306 12 8 7.2326 1.0934 3.5080 13 7 9.3854 0.9181 3.0016 14 6 9.7772 1.6091 4.2326 15 6 11.3024 1.7118 4.2965 16 6 11.7054 2.4220 5.5630 17 1 10.9493 2.7662 6.2531 18 6 13.0394 2.6325 5.8408 19 7 13.9602 2.2129 5.0006 20 14 13.5389 3.5135 7.4104 21 1 13.7250 2.5197 8.4981 22 1 14.8119 4.2441 7.1843 23 1 12.4770 4.4770 7.7966 24 6 3.5805 -1.1973 -0.0030 25 6 2.1982 -1.1972 0.0009 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3632 0.8900 0.5138 29 1 1.6584 2.1324 -0.0004 30 1 4.1207 2.1322 0.0001 31 1 6.1425 0.8893 -0.5111 32 1 6.1424 -0.8906 -0.5098 33 1 7.8948 -1.9571 0.5908 34 1 9.2728 -1.4430 1.5929 35 1 7.7528 -1.9555 2.3651 36 1 10.0646 0.6087 2.3819 37 1 9.3447 2.6096 4.2409 38 1 9.4146 1.0493 5.0946 39 1 11.7345 0.7111 4.2883 40 1 11.6653 2.2713 3.4344 41 1 14.8987 2.3607 5.1963 42 1 4.1204 -2.1327 -0.0063 43 1 1.6581 -2.1325 0.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599751675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:22 Heat of formation + Delta-G solvation = -99.000799 kcal Electronic energy + Delta-G solvation = -21906.336629 eV Core-core repulsion = 18528.887672 eV Total energy + Delta-G solvation = -3377.448957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.04683 -40.34059 -38.59904 -36.57913 -34.89834 -34.37526 -32.68127 -31.84785 -31.05138 -29.23359 -27.02477 -25.68226 -24.69562 -23.64900 -22.86121 -21.76360 -21.42435 -18.69585 -18.34421 -18.02234 -17.07956 -16.85977 -16.52267 -16.46432 -16.24134 -16.00339 -15.53363 -15.12283 -14.68512 -14.58990 -14.31143 -14.30655 -14.13516 -13.67329 -13.40363 -13.22805 -13.13363 -12.95153 -12.86144 -12.79269 -12.55199 -12.40240 -12.24069 -11.86838 -11.84499 -11.66228 -11.45593 -11.00319 -10.60716 -10.48172 -10.05618 -9.84282 -9.52194 -8.24608 -6.34706 0.28087 0.48639 1.41562 1.41754 1.53248 1.58037 1.93545 2.40768 2.69771 3.10052 3.18578 3.66762 3.85242 3.86296 3.96108 4.05080 4.11468 4.14590 4.25059 4.37909 4.47450 4.47907 4.58627 4.62529 4.71089 4.80437 4.83593 4.84146 4.84747 4.94591 5.16805 5.19380 5.26511 5.27260 5.46664 5.47573 5.57945 5.65688 5.67903 5.77736 6.05781 6.11046 6.15877 6.61915 6.78047 7.25123 7.34362 8.86973 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035573 B = 0.002244 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.922343 B =12476.452663 C =12943.104987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.111 4.111 5 C -0.115 4.115 6 C 0.097 3.903 7 O -0.382 6.382 8 C 0.076 3.924 9 H 0.118 0.882 10 C -0.164 4.164 11 C 0.502 3.498 12 O -0.582 6.582 13 N -0.711 5.711 14 C 0.141 3.859 15 C 0.024 3.976 16 C -0.548 4.548 17 H 0.056 0.944 18 C 0.008 3.992 19 N -0.924 5.924 20 Si 0.964 3.036 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.268 1.268 24 C -0.104 4.104 25 C -0.134 4.134 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.413 0.587 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.012 0.988 40 H 0.012 0.988 41 H 0.266 0.734 42 H 0.137 0.863 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.945 -8.326 -16.808 28.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.155 4.155 4 C -0.129 4.129 5 C -0.115 4.115 6 C 0.021 3.979 7 O -0.301 6.301 8 C 0.016 3.984 9 H 0.136 0.864 10 C -0.222 4.222 11 C 0.289 3.711 12 O -0.462 6.462 13 N -0.364 5.364 14 C 0.017 3.983 15 C -0.014 4.014 16 C -0.586 4.586 17 H 0.075 0.925 18 C -0.191 4.191 19 N -0.564 5.564 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.193 1.193 24 C -0.121 4.121 25 C -0.152 4.152 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.154 0.846 30 H 0.141 0.859 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.250 0.750 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.075 0.925 42 H 0.155 0.845 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.489 -8.054 -16.128 28.049 hybrid contribution 1.088 0.515 0.559 1.327 sum -20.401 -7.539 -15.570 26.748 Atomic orbital electron populations 1.20851 0.89272 1.03593 1.03263 1.20359 0.97675 0.93049 0.98001 1.21291 0.93903 0.98750 1.01508 1.21281 0.95009 0.97912 0.98737 1.19770 0.94635 0.94111 1.03027 1.21608 0.90566 1.02595 0.83086 1.88109 1.19341 1.95184 1.27470 1.21986 0.83232 0.98012 0.95209 0.86399 1.22230 1.02572 0.93157 1.04221 1.21231 0.82280 0.79063 0.88555 1.90671 1.51570 1.52708 1.51208 1.46044 1.07048 1.58914 1.24360 1.21235 0.96779 0.95057 0.85235 1.19130 0.89066 0.96565 0.96602 1.21460 0.92532 1.38077 1.06573 0.92534 1.25849 0.96568 0.96366 1.00330 1.70050 1.01015 1.47465 1.37830 0.85460 0.77748 0.78712 0.79215 1.19783 1.20396 1.19258 1.21305 0.94814 0.97786 0.98242 1.21341 0.94044 0.98592 1.01178 0.89904 0.90602 0.91011 0.84561 0.85887 0.91335 0.89722 0.88452 0.89375 0.92896 0.75035 0.93745 0.93775 0.96978 0.96991 0.92513 0.84494 0.83905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 71.24 0.71 -0.54 16 2 C -0.09 -1.56 5.88 -19.86 -0.12 -1.68 16 3 C -0.14 -2.62 9.70 22.27 0.22 -2.40 16 4 C -0.11 -2.44 9.70 22.27 0.22 -2.22 16 5 C -0.12 -2.52 5.51 -19.87 -0.11 -2.63 16 6 C 0.10 1.93 5.87 71.24 0.42 2.35 16 7 O -0.38 -10.79 9.51 -129.99 -1.24 -12.03 16 8 C 0.08 1.88 3.13 29.85 0.09 1.97 16 9 H 0.12 2.09 7.79 -2.39 -0.02 2.07 16 10 C -0.16 -3.10 9.48 71.98 0.68 -2.41 16 11 C 0.50 17.77 7.18 87.66 0.63 18.40 16 12 O -0.58 -26.78 16.51 15.95 0.26 -26.52 16 13 N -0.71 -24.68 5.51 -463.05 -2.55 -27.24 16 14 C 0.14 6.15 5.61 86.38 0.48 6.64 16 15 C 0.02 1.20 5.09 29.84 0.15 1.35 16 16 C -0.55 -30.75 9.11 25.60 0.23 -30.51 16 17 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 18 C 0.01 0.44 5.46 84.65 0.46 0.90 16 19 N -0.92 -53.77 13.29 21.45 0.28 -53.49 16 20 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 C -0.10 -1.98 9.70 22.27 0.22 -1.77 16 25 C -0.13 -2.30 9.70 22.27 0.22 -2.08 16 26 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 28 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 29 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 30 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.07 1.18 8.03 -2.39 -0.02 1.16 16 32 H 0.08 1.20 7.81 -2.39 -0.02 1.18 16 33 H 0.10 1.26 7.87 -2.39 -0.02 1.24 16 34 H 0.09 1.44 7.90 -2.39 -0.02 1.42 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.41 11.64 8.23 -92.71 -0.76 10.87 16 37 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.04 2.03 8.14 -2.39 -0.02 2.02 16 39 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 42 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 43 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -73.99 367.75 3.51 -70.48 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.22 Total: 17.67 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 4.51 Total: -14.64 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -2.27 Total: -80.72 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.97 Total: -38.55 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -73.99 3.51 -70.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599751675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.524 kcal (2) G-P(sol) polarization free energy of solvation -73.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds