Wall clock time and date at job start Tue Mar 31 2020 06:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37833 * 120.04534 * 2 1 4 4 C 1.38509 * 120.29752 * 179.97438 * 3 2 1 5 5 C 1.38101 * 120.39039 * 0.23371 * 4 3 2 6 6 C 1.38669 * 120.08366 * 359.48367 * 5 4 3 7 7 O 1.35650 * 120.14848 * 180.28111 * 6 5 4 8 8 C 1.39675 * 120.04610 * 179.97438 * 2 1 3 9 9 C 1.47539 * 120.19273 * 0.04332 * 8 2 1 10 10 O 1.21587 * 119.99953 * 89.99837 * 9 8 2 11 11 N 1.34779 * 119.99762 * 270.00224 * 9 8 2 12 12 C 1.46498 * 119.99557 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47073 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47518 * 300.01006 * 13 12 11 15 15 C 1.53008 * 109.46818 * 60.00188 * 13 12 11 16 16 C 1.52999 * 109.47489 * 180.02562 * 13 12 11 17 17 C 1.50693 * 109.47485 * 180.02562 * 16 13 12 18 18 H 1.08002 * 119.99720 * 359.97438 * 17 16 13 19 19 C 1.37870 * 120.00247 * 179.97438 * 17 16 13 20 20 N 1.31515 * 120.00184 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00278 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46857 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47036 * 120.00012 * 21 19 17 24 24 H 1.48496 * 109.47628 * 240.00266 * 21 19 17 25 25 H 1.08999 * 109.47059 * 90.00204 * 1 2 3 26 26 H 1.08998 * 109.47051 * 210.00145 * 1 2 3 27 27 H 1.08998 * 109.47308 * 330.00678 * 1 2 3 28 28 H 1.07995 * 119.84701 * 359.97245 * 3 2 1 29 29 H 1.08002 * 119.79989 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.95632 * 179.74966 * 5 4 3 31 31 H 0.96698 * 114.00125 * 270.25464 * 7 6 5 32 32 H 0.97000 * 119.99892 * 0.02562 * 11 9 8 33 33 H 1.09000 * 109.47522 * 300.00189 * 12 11 9 34 34 H 1.08998 * 109.46851 * 60.00595 * 12 11 9 35 35 H 1.08997 * 109.47209 * 59.99358 * 14 13 12 36 36 H 1.09000 * 109.47082 * 180.02562 * 14 13 12 37 37 H 1.09006 * 109.46380 * 299.99310 * 14 13 12 38 38 H 1.09000 * 109.46813 * 60.00083 * 15 13 12 39 39 H 1.08997 * 109.47175 * 179.97438 * 15 13 12 40 40 H 1.08997 * 109.47375 * 300.00315 * 15 13 12 41 41 H 1.09000 * 109.47113 * 300.00511 * 16 13 12 42 42 H 1.09002 * 109.46757 * 60.00178 * 16 13 12 43 43 H 0.96996 * 120.00259 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1931 0.0000 4 6 3.5822 1.1992 0.0005 5 6 4.2860 0.0111 -0.0038 6 6 3.6080 -1.1985 0.0021 7 8 4.2981 -2.3664 0.0036 8 6 2.2063 -1.2091 0.0005 9 6 1.4740 -2.4898 0.0001 10 8 1.1729 -3.0176 -1.0530 11 7 1.1387 -3.0747 1.1672 12 6 0.4110 -4.3462 1.1668 13 6 0.1575 -4.7892 2.6091 14 6 1.4949 -4.9671 3.3307 15 6 -0.6736 -3.7262 3.3305 16 6 -0.6019 -6.1174 2.6088 17 6 -0.8522 -6.5535 4.0294 18 1 -0.5039 -5.9443 4.8505 19 6 -1.5256 -7.7299 4.2810 20 7 -1.9492 -8.4719 3.2812 21 14 -1.8352 -8.2708 6.0420 22 1 -1.2620 -7.2682 6.9758 23 1 -3.2973 -8.3845 6.2751 24 1 -1.1928 -9.5891 6.2752 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6554 2.1274 -0.0005 29 1 4.1148 2.1388 0.0001 30 1 5.3660 0.0240 -0.0074 31 1 4.4988 -2.7058 -0.8793 32 1 1.3786 -2.6534 2.0074 33 1 -0.5416 -4.2195 0.6525 34 1 1.0033 -5.1035 0.6533 35 1 2.0362 -4.0211 3.3309 36 1 1.3142 -5.2831 4.3581 37 1 2.0870 -5.7244 2.8167 38 1 -1.6264 -3.5994 2.8166 39 1 -0.8546 -4.0419 4.3579 40 1 -0.1322 -2.7801 3.3308 41 1 -1.5547 -5.9910 2.0947 42 1 -0.0095 -6.8745 2.0950 43 1 -2.4226 -9.2998 3.4582 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599941971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:04 Heat of formation + Delta-G solvation = -77.640865 kcal Electronic energy + Delta-G solvation = -23418.610005 eV Core-core repulsion = 20042.087284 eV Total energy + Delta-G solvation = -3376.522721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60256 -38.82281 -37.14426 -36.96322 -33.60318 -32.82172 -32.03273 -30.39725 -27.43405 -27.07210 -26.49103 -26.21831 -23.81490 -22.58987 -21.90810 -20.26823 -18.62611 -18.18550 -17.28128 -16.43207 -16.34071 -15.77766 -15.64698 -14.82672 -14.58896 -14.49274 -13.98735 -13.69487 -13.53243 -13.36407 -13.08591 -12.89316 -12.73903 -12.17634 -12.07700 -12.05387 -11.98297 -11.81591 -11.14480 -11.01563 -10.92468 -10.82339 -10.63230 -10.40118 -10.23759 -9.87547 -9.86747 -9.16790 -9.05430 -8.90378 -8.85832 -8.73184 -8.35644 -5.99502 -4.00624 0.82337 0.97575 2.71786 3.18971 3.30617 3.38689 3.41100 3.50031 3.93291 4.45731 4.53745 4.60410 4.76307 4.98862 5.05652 5.27107 5.36178 5.43919 5.46372 5.52383 5.57439 5.63374 5.77172 5.89694 6.01746 6.05517 6.18690 6.20814 6.24938 6.29114 6.40927 6.48271 6.56439 6.64995 6.76868 7.07164 7.09092 7.13630 7.40756 7.64649 7.72028 7.76970 7.99446 8.35847 8.42230 9.04403 9.62586 11.12027 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028277 B = 0.003341 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.980637 B = 8378.208975 C = 8508.822548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.034 4.034 3 C -0.133 4.133 4 C -0.088 4.088 5 C -0.155 4.155 6 C 0.144 3.856 7 O -0.492 6.492 8 C -0.151 4.151 9 C 0.565 3.435 10 O -0.542 6.542 11 N -0.708 5.708 12 C 0.127 3.873 13 C -0.072 4.072 14 C -0.127 4.127 15 C -0.127 4.127 16 C 0.036 3.964 17 C -0.510 4.510 18 H 0.060 0.940 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.396 0.604 32 H 0.400 0.600 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.029 0.971 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.028 0.972 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.259 20.005 -6.104 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.035 4.035 3 C -0.152 4.152 4 C -0.106 4.106 5 C -0.173 4.173 6 C 0.099 3.901 7 O -0.303 6.303 8 C -0.155 4.155 9 C 0.350 3.650 10 O -0.420 6.420 11 N -0.358 5.358 12 C 0.004 3.996 13 C -0.073 4.073 14 C -0.184 4.184 15 C -0.185 4.185 16 C -0.001 4.001 17 C -0.548 4.548 18 H 0.078 0.922 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.254 0.746 32 H 0.236 0.764 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.900 19.475 -6.275 22.730 hybrid contribution 0.019 -0.339 0.815 0.883 sum 9.919 19.136 -5.460 22.235 Atomic orbital electron populations 1.20920 0.90289 1.03541 1.03288 1.19850 0.96361 0.91223 0.96081 1.20988 0.94231 0.97419 1.02513 1.21128 0.94075 0.97804 0.97577 1.21359 1.00677 0.91531 1.03782 1.18413 0.88034 0.85949 0.97737 1.84743 1.75005 1.36624 1.33955 1.20323 0.93554 0.94238 1.07366 1.17983 0.78752 0.83858 0.84415 1.90802 1.55007 1.64818 1.31326 1.46214 1.57234 1.24431 1.07916 1.21681 0.95712 0.83370 0.98788 1.20909 0.96419 0.98937 0.90995 1.21759 0.95740 0.99051 1.01889 1.21767 0.98785 0.95905 1.02013 1.19091 0.94647 0.88893 0.97488 1.21222 1.35561 1.05837 0.92205 0.92189 1.25013 0.95975 0.96787 0.96738 1.69974 1.38935 1.14048 1.30459 0.86596 0.77849 0.78580 0.85320 1.19790 1.21145 1.21131 0.90264 0.90944 0.90694 0.85213 0.85266 0.84927 0.74627 0.76435 0.91706 0.91674 0.95182 0.91440 0.93331 0.93353 0.91370 0.95269 0.96348 0.96327 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.62 36.01 0.35 -0.92 16 2 C -0.03 -0.38 5.91 -104.23 -0.62 -1.00 16 3 C -0.13 -1.17 9.68 -39.63 -0.38 -1.55 16 4 C -0.09 -0.71 10.03 -39.53 -0.40 -1.11 16 5 C -0.15 -1.45 9.98 -39.47 -0.39 -1.85 16 6 C 0.14 1.72 6.72 -38.70 -0.26 1.46 16 7 O -0.49 -5.84 12.95 -18.65 -0.24 -6.08 16 8 C -0.15 -2.00 5.64 -104.84 -0.59 -2.59 16 9 C 0.57 9.08 5.25 -12.47 -0.07 9.01 16 10 O -0.54 -10.58 17.11 5.29 0.09 -10.49 16 11 N -0.71 -11.04 4.96 -61.35 -0.30 -11.34 16 12 C 0.13 2.31 4.56 -4.04 -0.02 2.29 16 13 C -0.07 -1.39 0.54 -154.50 -0.08 -1.48 16 14 C -0.13 -2.32 8.05 37.16 0.30 -2.02 16 15 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 16 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 17 C -0.51 -13.60 7.65 -34.45 -0.26 -13.86 16 18 H 0.06 1.54 5.68 -52.49 -0.30 1.25 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 21 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.86 7.08 -51.93 -0.37 0.49 16 27 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.40 3.23 9.06 45.56 0.41 3.64 16 32 H 0.40 5.66 6.15 -40.82 -0.25 5.41 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 36 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 40 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -32.51 352.82 -7.45 -39.96 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.69 Total: 5.47 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -2.34 Total: -13.33 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.43 Total: -37.09 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.15 Total: -16.57 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.51 -7.45 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599941971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.681 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds