Wall clock time and date at job start Tue Mar 31 2020 06:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37833 * 120.04534 * 2 1 4 4 C 1.38509 * 120.29752 * 179.97438 * 3 2 1 5 5 C 1.38101 * 120.39039 * 0.23371 * 4 3 2 6 6 C 1.38669 * 120.08366 * 359.48367 * 5 4 3 7 7 O 1.35650 * 120.14848 * 180.28111 * 6 5 4 8 8 C 1.39675 * 120.04610 * 179.97438 * 2 1 3 9 9 C 1.47539 * 120.19273 * 0.04332 * 8 2 1 10 10 O 1.21587 * 119.99953 * 89.99837 * 9 8 2 11 11 N 1.34779 * 119.99762 * 270.00224 * 9 8 2 12 12 C 1.46498 * 119.99557 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47073 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47518 * 300.01006 * 13 12 11 15 15 C 1.53008 * 109.46818 * 60.00188 * 13 12 11 16 16 C 1.52999 * 109.47489 * 180.02562 * 13 12 11 17 17 C 1.50693 * 109.47485 * 180.02562 * 16 13 12 18 18 H 1.08002 * 119.99720 * 359.97438 * 17 16 13 19 19 C 1.37870 * 120.00247 * 179.97438 * 17 16 13 20 20 N 1.31515 * 120.00184 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00278 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46857 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47036 * 120.00012 * 21 19 17 24 24 H 1.48496 * 109.47628 * 240.00266 * 21 19 17 25 25 H 1.08999 * 109.47059 * 90.00204 * 1 2 3 26 26 H 1.08998 * 109.47051 * 210.00145 * 1 2 3 27 27 H 1.08998 * 109.47308 * 330.00678 * 1 2 3 28 28 H 1.07995 * 119.84701 * 359.97245 * 3 2 1 29 29 H 1.08002 * 119.79989 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.95632 * 179.74966 * 5 4 3 31 31 H 0.96698 * 114.00125 * 270.25464 * 7 6 5 32 32 H 0.97000 * 119.99892 * 0.02562 * 11 9 8 33 33 H 1.09000 * 109.47522 * 300.00189 * 12 11 9 34 34 H 1.08998 * 109.46851 * 60.00595 * 12 11 9 35 35 H 1.08997 * 109.47209 * 59.99358 * 14 13 12 36 36 H 1.09000 * 109.47082 * 180.02562 * 14 13 12 37 37 H 1.09006 * 109.46380 * 299.99310 * 14 13 12 38 38 H 1.09000 * 109.46813 * 60.00083 * 15 13 12 39 39 H 1.08997 * 109.47175 * 179.97438 * 15 13 12 40 40 H 1.08997 * 109.47375 * 300.00315 * 15 13 12 41 41 H 1.09000 * 109.47113 * 300.00511 * 16 13 12 42 42 H 1.09002 * 109.46757 * 60.00178 * 16 13 12 43 43 H 0.96996 * 120.00259 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1931 0.0000 4 6 3.5822 1.1992 0.0005 5 6 4.2860 0.0111 -0.0038 6 6 3.6080 -1.1985 0.0021 7 8 4.2981 -2.3664 0.0036 8 6 2.2063 -1.2091 0.0005 9 6 1.4740 -2.4898 0.0001 10 8 1.1729 -3.0176 -1.0530 11 7 1.1387 -3.0747 1.1672 12 6 0.4110 -4.3462 1.1668 13 6 0.1575 -4.7892 2.6091 14 6 1.4949 -4.9671 3.3307 15 6 -0.6736 -3.7262 3.3305 16 6 -0.6019 -6.1174 2.6088 17 6 -0.8522 -6.5535 4.0294 18 1 -0.5039 -5.9443 4.8505 19 6 -1.5256 -7.7299 4.2810 20 7 -1.9492 -8.4719 3.2812 21 14 -1.8352 -8.2708 6.0420 22 1 -1.2620 -7.2682 6.9758 23 1 -3.2973 -8.3845 6.2751 24 1 -1.1928 -9.5891 6.2752 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6554 2.1274 -0.0005 29 1 4.1148 2.1388 0.0001 30 1 5.3660 0.0240 -0.0074 31 1 4.4988 -2.7058 -0.8793 32 1 1.3786 -2.6534 2.0074 33 1 -0.5416 -4.2195 0.6525 34 1 1.0033 -5.1035 0.6533 35 1 2.0362 -4.0211 3.3309 36 1 1.3142 -5.2831 4.3581 37 1 2.0870 -5.7244 2.8167 38 1 -1.6264 -3.5994 2.8166 39 1 -0.8546 -4.0419 4.3579 40 1 -0.1322 -2.7801 3.3308 41 1 -1.5547 -5.9910 2.0947 42 1 -0.0095 -6.8745 2.0950 43 1 -2.4226 -9.2998 3.4582 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599941971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:03 Heat of formation + Delta-G solvation = -99.755832 kcal Electronic energy + Delta-G solvation = -23419.568982 eV Core-core repulsion = 20042.087284 eV Total energy + Delta-G solvation = -3377.481698 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.62174 -39.99282 -38.56489 -37.90686 -35.27284 -34.05359 -33.45774 -31.28631 -29.11823 -28.20554 -27.99935 -27.57943 -25.27724 -24.03245 -22.73681 -21.46681 -20.04603 -19.09316 -18.52981 -18.36522 -17.32279 -17.13383 -16.49186 -16.43139 -15.98341 -15.79858 -15.08807 -14.89977 -14.71764 -14.59019 -14.38791 -14.29379 -13.96358 -13.77312 -13.63398 -12.90815 -12.83797 -12.74200 -12.71594 -12.63726 -12.56451 -12.37338 -12.25368 -11.97556 -11.80999 -11.57249 -11.22377 -10.92684 -10.80679 -10.52693 -10.15590 -9.86256 -9.59283 -8.14558 -6.22421 0.03621 0.24840 1.41544 1.42579 1.46805 1.54448 2.15158 2.44425 2.57013 3.16745 3.19972 3.64376 3.80753 3.93568 4.02363 4.03695 4.18818 4.31832 4.34443 4.58517 4.64971 4.67534 4.67752 4.68677 4.76627 4.86959 4.92297 5.05533 5.09006 5.15840 5.29096 5.32921 5.38013 5.42438 5.46859 5.47914 5.49605 5.54986 5.77254 5.81992 5.88766 6.29090 6.45332 6.66934 6.92518 7.10356 7.45396 8.98241 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028277 B = 0.003341 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.980637 B = 8378.208975 C = 8508.822548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.045 4.045 3 C -0.128 4.128 4 C -0.075 4.075 5 C -0.154 4.154 6 C 0.129 3.871 7 O -0.509 6.509 8 C -0.181 4.181 9 C 0.570 3.430 10 O -0.585 6.585 11 N -0.698 5.698 12 C 0.140 3.860 13 C -0.064 4.064 14 C -0.121 4.121 15 C -0.121 4.121 16 C 0.041 3.959 17 C -0.513 4.513 18 H 0.072 0.928 19 C -0.005 4.005 20 N -0.938 5.938 21 Si 0.959 3.041 22 H -0.257 1.257 23 H -0.283 1.283 24 H -0.284 1.284 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.103 0.897 28 H 0.161 0.839 29 H 0.167 0.833 30 H 0.154 0.846 31 H 0.407 0.593 32 H 0.410 0.590 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.036 0.964 38 H 0.041 0.959 39 H 0.057 0.943 40 H 0.065 0.935 41 H -0.012 1.012 42 H -0.014 1.014 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.730 23.465 -4.605 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.046 4.046 3 C -0.146 4.146 4 C -0.093 4.093 5 C -0.173 4.173 6 C 0.083 3.917 7 O -0.322 6.322 8 C -0.184 4.184 9 C 0.357 3.643 10 O -0.466 6.466 11 N -0.348 5.348 12 C 0.017 3.983 13 C -0.064 4.064 14 C -0.178 4.178 15 C -0.178 4.178 16 C 0.004 3.996 17 C -0.551 4.551 18 H 0.090 0.910 19 C -0.202 4.202 20 N -0.580 5.580 21 Si 0.784 3.216 22 H -0.181 1.181 23 H -0.209 1.209 24 H -0.211 1.211 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.121 0.879 28 H 0.179 0.821 29 H 0.185 0.815 30 H 0.171 0.829 31 H 0.266 0.734 32 H 0.248 0.752 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.006 0.994 42 H 0.004 0.996 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.391 22.966 -4.754 26.073 hybrid contribution -0.397 -1.351 0.268 1.433 sum 10.994 21.616 -4.486 24.663 Atomic orbital electron populations 1.20941 0.90161 1.03790 1.03142 1.20039 0.96688 0.91400 0.96441 1.21356 0.94809 0.97500 1.00933 1.21602 0.93951 0.98765 0.94951 1.21634 1.01820 0.90882 1.02926 1.18656 0.87631 0.86803 0.98584 1.84697 1.75005 1.37239 1.35242 1.20207 0.94162 0.93116 1.10934 1.18494 0.77821 0.84558 0.83445 1.90768 1.56727 1.66314 1.32774 1.46028 1.56827 1.23326 1.08644 1.21286 0.95094 0.84331 0.97626 1.20710 0.96824 0.96739 0.92154 1.21680 0.94956 1.00432 1.00709 1.21688 0.98647 0.96761 1.00726 1.18956 0.93362 0.91099 0.96195 1.21609 1.34606 1.05755 0.93148 0.90960 1.25945 0.95998 0.97127 1.01092 1.70126 1.40214 1.14660 1.32960 0.85484 0.77636 0.78245 0.80204 1.18075 1.20949 1.21057 0.90670 0.93195 0.87881 0.82133 0.81543 0.82862 0.73350 0.75245 0.93105 0.93590 0.91929 0.92321 0.94471 0.94026 0.92359 0.91655 0.99357 0.99603 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 9.62 71.24 0.69 -1.67 16 2 C -0.04 -0.91 5.91 -19.61 -0.12 -1.03 16 3 C -0.13 -1.74 9.68 22.24 0.22 -1.52 16 4 C -0.07 -0.87 10.03 22.30 0.22 -0.65 16 5 C -0.15 -2.39 9.98 22.34 0.22 -2.17 16 6 C 0.13 2.88 6.72 22.84 0.15 3.03 16 7 O -0.51 -11.79 12.95 -89.65 -1.16 -12.95 16 8 C -0.18 -4.64 5.64 -20.01 -0.11 -4.75 16 9 C 0.57 18.64 5.25 86.70 0.46 19.09 16 10 O -0.58 -23.89 17.11 -3.99 -0.07 -23.96 16 11 N -0.70 -21.85 4.96 -466.27 -2.31 -24.16 16 12 C 0.14 5.31 4.56 86.38 0.39 5.71 16 13 C -0.06 -2.51 0.54 -52.18 -0.03 -2.54 16 14 C -0.12 -4.34 8.05 71.98 0.58 -3.76 16 15 C -0.12 -4.19 8.05 71.98 0.58 -3.61 16 16 C 0.04 2.14 4.04 29.85 0.12 2.27 16 17 C -0.51 -27.80 7.65 25.60 0.20 -27.61 16 18 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 19 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 20 N -0.94 -57.43 13.29 21.44 0.28 -57.15 16 21 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 22 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.16 7.08 -2.39 -0.02 1.14 16 27 H 0.10 1.31 8.09 -2.39 -0.02 1.29 16 28 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 29 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 30 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 31 H 0.41 6.69 9.06 -74.06 -0.67 6.02 16 32 H 0.41 11.06 6.15 -92.71 -0.57 10.49 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 1.83 6.86 -2.39 -0.02 1.82 16 36 H 0.06 2.21 6.62 -2.39 -0.02 2.20 16 37 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 2.14 6.62 -2.39 -0.02 2.13 16 40 H 0.06 1.78 6.86 -2.39 -0.02 1.76 16 41 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 42 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 43 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -73.55 352.82 2.59 -70.96 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -0.21 Total: 20.32 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 4.03 Total: -19.01 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -2.03 Total: -81.30 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.23 Total: -36.90 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -73.55 2.59 -70.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599941971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.792 kcal (2) G-P(sol) polarization free energy of solvation -73.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds