Wall clock time and date at job start Tue Mar 31 2020 06:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00057 * 2 1 4 4 C 1.38215 * 120.00138 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99731 * 0.28183 * 4 3 2 6 6 C 1.38210 * 120.00153 * 359.50669 * 5 4 3 7 7 C 1.50700 * 120.00286 * 180.25148 * 6 5 4 8 8 O 1.42898 * 109.47450 * 270.21918 * 7 6 5 9 9 C 1.42905 * 113.99725 * 179.97438 * 8 7 6 10 10 H 1.08991 * 109.47177 * 30.00066 * 9 8 7 11 11 C 1.53003 * 109.47028 * 269.99795 * 9 8 7 12 12 C 1.50702 * 109.46729 * 150.00245 * 9 8 7 13 13 O 1.21280 * 120.00260 * 8.56310 * 12 9 8 14 14 N 1.34775 * 119.99757 * 188.56694 * 12 9 8 15 15 C 1.46491 * 120.00233 * 4.58440 * 14 12 9 16 16 C 1.46502 * 119.99791 * 184.57770 * 14 12 9 17 17 C 1.50702 * 109.46704 * 90.00360 * 16 14 12 18 18 H 1.07997 * 120.00308 * 359.97438 * 17 16 14 19 19 C 1.37882 * 119.99953 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99792 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00270 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46752 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46959 * 119.99880 * 21 19 17 24 24 H 1.48492 * 109.47297 * 240.00176 * 21 19 17 25 25 C 1.38218 * 120.00287 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47141 * 89.99517 * 1 2 3 27 27 H 1.08993 * 109.47033 * 209.99590 * 1 2 3 28 28 H 1.08999 * 109.46877 * 330.00024 * 1 2 3 29 29 H 1.08004 * 120.00088 * 0.02562 * 3 2 1 30 30 H 1.08003 * 120.00037 * 180.02562 * 4 3 2 31 31 H 1.08004 * 119.99897 * 179.72218 * 5 4 3 32 32 H 1.09009 * 109.46819 * 30.21772 * 7 6 5 33 33 H 1.08998 * 109.47209 * 150.20961 * 7 6 5 34 34 H 1.08999 * 109.46768 * 67.15964 * 11 9 8 35 35 H 1.09001 * 109.46835 * 187.16229 * 11 9 8 36 36 H 1.08999 * 109.46993 * 307.15903 * 11 9 8 37 37 H 1.09002 * 109.47948 * 86.11312 * 15 14 12 38 38 H 1.08997 * 109.47505 * 206.11909 * 15 14 12 39 39 H 1.09003 * 109.46922 * 326.11280 * 15 14 12 40 40 H 1.09002 * 109.47284 * 209.99703 * 16 14 12 41 41 H 1.08995 * 109.47593 * 330.00505 * 16 14 12 42 42 H 0.97004 * 120.00145 * 179.97438 * 20 19 17 43 43 H 1.08003 * 119.99739 * 359.97111 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 -0.0048 6 6 3.5807 -1.1970 -0.0004 7 6 4.3341 -2.5021 -0.0005 8 8 4.5724 -2.9145 -1.3478 9 6 5.2852 -4.1480 -1.4606 10 1 5.0567 -4.7794 -0.6021 11 6 6.7885 -3.8664 -1.5009 12 6 4.8719 -4.8529 -2.7269 13 8 4.1697 -4.2843 -3.5359 14 7 5.2827 -6.1151 -2.9602 15 6 6.0461 -6.8374 -1.9397 16 6 4.9655 -6.7649 -4.2344 17 6 6.0673 -6.4913 -5.2256 18 1 6.9183 -5.8930 -4.9356 19 6 5.9888 -7.0049 -6.5027 20 7 4.9527 -7.7340 -6.8557 21 14 7.3540 -6.6653 -7.7316 22 1 8.3989 -5.8266 -7.0913 23 1 7.9532 -7.9503 -8.1734 24 1 6.7955 -5.9496 -8.9067 25 6 2.1982 -1.1970 -0.0005 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5138 29 1 1.6583 2.1327 0.0004 30 1 4.1204 2.1327 0.0010 31 1 5.3517 0.0000 -0.0089 32 1 5.2866 -2.3718 0.5134 33 1 3.7451 -3.2617 0.5133 34 1 7.1105 -3.4731 -0.5367 35 1 7.3256 -4.7907 -1.7141 36 1 7.0003 -3.1350 -2.2808 37 1 5.3585 -7.3193 -1.2446 38 1 6.6680 -7.5937 -2.4186 39 1 6.6801 -6.1367 -1.3964 40 1 4.8736 -7.8401 -4.0810 41 1 4.0248 -6.3709 -4.6189 42 1 4.8972 -8.0950 -7.7544 43 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601013483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:28 Heat of formation + Delta-G solvation = -55.318980 kcal Electronic energy + Delta-G solvation = -22846.433084 eV Core-core repulsion = 19470.878313 eV Total energy + Delta-G solvation = -3375.554772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.76157 -39.20818 -37.23719 -34.79828 -33.30847 -32.70076 -31.94199 -30.69992 -27.66165 -27.16578 -26.29893 -25.88789 -23.96264 -22.22182 -22.10828 -20.78307 -18.68178 -17.05968 -16.54741 -16.48550 -16.20900 -15.86720 -15.13041 -14.94736 -14.74608 -14.42467 -14.14142 -13.85371 -13.56983 -13.25388 -13.14287 -12.78143 -12.49977 -12.31333 -12.29103 -12.05134 -12.03364 -11.86276 -11.41439 -11.28499 -11.16423 -11.07423 -10.90853 -10.76995 -10.56692 -10.13824 -9.70424 -9.58603 -8.95869 -8.75742 -8.64469 -8.42685 -7.62476 -6.03223 -4.08076 1.17349 1.30743 3.30107 3.30763 3.38079 3.40625 3.44924 3.80677 4.31358 4.46315 4.64325 4.71780 4.81129 4.96261 5.03406 5.10685 5.12886 5.16864 5.29527 5.29902 5.31749 5.43248 5.46378 5.52945 5.56699 5.68068 5.79014 5.82097 5.89471 5.94247 6.02633 6.14221 6.34722 6.37077 6.46017 6.52688 6.90261 6.98835 7.25811 7.46783 7.56660 7.93746 8.24348 8.41404 8.91855 9.11833 9.57106 11.04875 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021528 B = 0.003154 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.312599 B = 8875.527137 C = 9101.838000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.117 4.117 4 C -0.122 4.122 5 C -0.103 4.103 6 C -0.081 4.081 7 C 0.099 3.901 8 O -0.348 6.348 9 C 0.070 3.930 10 H 0.077 0.923 11 C -0.175 4.175 12 C 0.507 3.493 13 O -0.521 6.521 14 N -0.601 5.601 15 C 0.071 3.929 16 C 0.245 3.755 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.894 5.894 21 Si 0.898 3.102 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.282 1.282 25 C -0.096 4.096 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.033 0.967 41 H 0.045 0.955 42 H 0.263 0.737 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 11.993 19.376 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.135 4.135 4 C -0.140 4.140 5 C -0.121 4.121 6 C -0.081 4.081 7 C 0.022 3.978 8 O -0.266 6.266 9 C 0.009 3.991 10 H 0.095 0.905 11 C -0.233 4.233 12 C 0.292 3.708 13 O -0.396 6.396 14 N -0.336 5.336 15 C -0.073 4.073 16 C 0.127 3.873 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.208 1.208 25 C -0.114 4.114 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.320 12.286 18.613 22.422 hybrid contribution 0.961 -0.095 -0.548 1.110 sum -1.359 12.191 18.065 21.836 Atomic orbital electron populations 1.20789 0.91115 1.02580 1.02574 1.19913 0.96170 0.93076 0.99992 1.21043 0.94307 0.97429 1.00761 1.21101 0.94309 0.97892 1.00660 1.21037 0.99930 0.91870 0.99302 1.19567 0.93649 0.94044 1.00865 1.21390 0.98076 0.93255 0.85047 1.88170 1.76233 1.37869 1.24358 1.22000 0.92769 0.86629 0.97703 0.90504 1.22371 0.94223 1.03836 1.02820 1.20023 0.81341 0.82139 0.87335 1.90685 1.36710 1.64963 1.47213 1.48079 1.53838 1.13032 1.18602 1.21913 0.95939 0.97682 0.91801 1.19315 0.97668 0.92314 0.78050 1.21485 1.06041 1.32433 0.96588 0.92362 1.24947 0.96088 0.95038 0.98092 1.69946 1.29057 1.34663 1.19680 0.86435 0.81844 0.77893 0.81209 1.19785 1.20976 1.20846 1.20975 0.93459 0.97851 0.99099 0.90981 0.91511 0.91672 0.86178 0.85985 0.85977 0.92461 0.92515 0.91997 0.89909 0.90919 0.93799 0.90446 0.91741 0.94870 0.93726 0.92762 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.09 -1.02 5.88 -104.62 -0.62 -1.64 16 3 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 4 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 5 C -0.10 -1.21 9.70 -39.58 -0.38 -1.59 16 6 C -0.08 -1.05 5.51 -104.63 -0.58 -1.62 16 7 C 0.10 1.25 5.87 36.01 0.21 1.46 16 8 O -0.35 -6.03 9.52 -54.99 -0.52 -6.55 16 9 C 0.07 1.15 2.32 -27.88 -0.06 1.08 16 10 H 0.08 1.00 7.36 -51.93 -0.38 0.62 16 11 C -0.18 -2.41 9.12 37.16 0.34 -2.07 16 12 C 0.51 11.21 7.03 -10.99 -0.08 11.13 16 13 O -0.52 -14.25 16.08 -14.21 -0.23 -14.48 16 14 N -0.60 -13.03 2.86 -182.96 -0.52 -13.55 16 15 C 0.07 1.10 9.80 59.84 0.59 1.69 16 16 C 0.25 6.55 5.18 -5.19 -0.03 6.52 16 17 C -0.53 -15.11 9.39 -34.44 -0.32 -15.44 16 18 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 21 Si 0.90 22.08 29.54 -169.99 -5.02 17.05 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 C -0.10 -1.20 9.36 -39.58 -0.37 -1.57 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 29 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 30 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 31 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.06 0.59 7.99 -51.92 -0.42 0.17 16 33 H 0.06 0.63 8.03 -51.93 -0.42 0.21 16 34 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 35 H 0.08 1.10 5.46 -51.93 -0.28 0.82 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 39 H 0.06 0.82 4.31 -51.93 -0.22 0.59 16 40 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 41 H 0.04 1.35 7.36 -51.93 -0.38 0.97 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 360.59 15.07 5.43 5.43 Total: -1.00 -35.66 360.59 -8.65 -44.30 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.70 Total: -1.77 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -1.82 Total: -4.29 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.21 Total: -39.70 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.75 Total: -21.03 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.66 -8.65 -44.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601013483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.015 kcal (2) G-P(sol) polarization free energy of solvation -35.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds