Wall clock time and date at job start Tue Mar 31 2020 06:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38213 * 119.99861 * 179.74627 * 3 2 1 5 5 C 1.38263 * 119.99917 * 0.53165 * 4 3 2 6 6 C 1.38216 * 119.99745 * 359.74585 * 5 4 3 7 7 C 1.50700 * 120.00020 * 180.02562 * 6 5 4 8 8 O 1.42898 * 109.47146 * 269.97731 * 7 6 5 9 9 C 1.42892 * 114.00205 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47214 * 329.99941 * 9 8 7 11 11 C 1.53001 * 109.47379 * 90.00128 * 9 8 7 12 12 C 1.50699 * 109.47456 * 210.00111 * 9 8 7 13 13 O 1.21287 * 119.99940 * 359.97438 * 12 9 8 14 14 N 1.34777 * 120.00456 * 179.97438 * 12 9 8 15 15 C 1.46500 * 119.99706 * 359.97438 * 14 12 9 16 16 C 1.46494 * 120.00239 * 179.97438 * 14 12 9 17 17 C 1.50696 * 109.47290 * 90.00358 * 16 14 12 18 18 H 1.08000 * 119.99881 * 359.97438 * 17 16 14 19 19 C 1.37876 * 120.00295 * 179.97438 * 17 16 14 20 20 N 1.31511 * 120.00165 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00059 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46570 * 90.00381 * 21 19 17 23 23 H 1.48503 * 109.46950 * 209.99695 * 21 19 17 24 24 H 1.48492 * 109.47204 * 330.00291 * 21 19 17 25 25 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 26 26 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 27 27 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 28 28 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 29 29 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.00647 * 180.29963 * 4 3 2 31 31 H 1.08002 * 119.99839 * 179.76522 * 5 4 3 32 32 H 1.09001 * 109.47196 * 29.97496 * 7 6 5 33 33 H 1.09001 * 109.47308 * 149.97936 * 7 6 5 34 34 H 1.08997 * 109.47640 * 180.02562 * 11 9 8 35 35 H 1.09004 * 109.46855 * 300.00258 * 11 9 8 36 36 H 1.09002 * 109.47101 * 59.99744 * 11 9 8 37 37 H 1.09005 * 109.47054 * 89.99911 * 15 14 12 38 38 H 1.08999 * 109.47326 * 209.99568 * 15 14 12 39 39 H 1.08994 * 109.47445 * 330.00293 * 15 14 12 40 40 H 1.09006 * 109.47285 * 210.00225 * 16 14 12 41 41 H 1.09003 * 109.47356 * 329.99752 * 16 14 12 42 42 H 0.97004 * 120.00428 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.00119 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0053 5 6 4.2718 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0063 7 6 4.3341 -2.5021 -0.0121 8 8 4.5723 -2.9086 -1.3611 9 6 5.2850 -4.1415 -1.4794 10 1 5.9464 -4.2626 -0.6215 11 6 4.2905 -5.3033 -1.5247 12 6 6.1019 -4.1300 -2.7457 13 8 6.0760 -3.1615 -3.4754 14 7 6.8614 -5.1959 -3.0675 15 6 6.8932 -6.3655 -2.1858 16 6 7.6551 -5.1849 -4.2987 17 6 9.0208 -4.6164 -4.0110 18 1 9.2722 -4.2950 -3.0111 19 6 9.9493 -4.5066 -5.0243 20 7 9.6434 -4.8985 -6.2419 21 14 11.6419 -3.8012 -4.6678 22 1 12.5636 -4.8987 -4.2790 23 1 12.1624 -3.1250 -5.8832 24 1 11.5453 -2.8194 -3.5580 25 6 2.1981 -1.1970 -0.0058 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3634 0.8925 -0.5094 28 1 -0.3633 -0.8875 -0.5181 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1326 0.0102 31 1 5.3518 0.0000 -0.0002 32 1 5.2865 -2.3741 0.5024 33 1 3.7450 -3.2640 0.4984 34 1 4.8341 -6.2437 -1.6145 35 1 3.6996 -5.3116 -0.6088 36 1 3.6291 -5.1821 -2.3826 37 1 6.1102 -7.0641 -2.4807 38 1 7.8645 -6.8539 -2.2650 39 1 6.7286 -6.0488 -1.1560 40 1 7.7572 -6.2031 -4.6743 41 1 7.1558 -4.5699 -5.0474 42 1 10.2965 -4.8209 -6.9549 43 1 1.6581 -2.1322 -0.0107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601013484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:31 Heat of formation + Delta-G solvation = -55.359659 kcal Electronic energy + Delta-G solvation = -22838.641553 eV Core-core repulsion = 19463.085017 eV Total energy + Delta-G solvation = -3375.556536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.76010 -39.21738 -37.22894 -34.83188 -33.32598 -32.72652 -31.91021 -30.70640 -27.60740 -27.14911 -26.34786 -25.90868 -23.98987 -22.24841 -22.03503 -20.79662 -18.70967 -17.07355 -16.56909 -16.40972 -16.22508 -15.84991 -15.22234 -14.94120 -14.73672 -14.41004 -14.05724 -13.87656 -13.52023 -13.27729 -13.10362 -12.81985 -12.53063 -12.37407 -12.29418 -12.12840 -12.03310 -11.82582 -11.42844 -11.27926 -11.13189 -11.08545 -10.87589 -10.83018 -10.56191 -10.14521 -9.68511 -9.61221 -8.95851 -8.73655 -8.64630 -8.42464 -7.63512 -6.03052 -4.07871 1.18774 1.31667 3.30663 3.31007 3.37302 3.40144 3.46274 3.80529 4.31223 4.46601 4.64668 4.72317 4.83136 4.95858 5.03332 5.08861 5.15529 5.16931 5.26756 5.31370 5.33358 5.38774 5.44989 5.55575 5.58457 5.64956 5.70114 5.78199 5.89166 5.94302 6.02538 6.09706 6.28190 6.38176 6.45835 6.54372 6.91506 6.98990 7.25508 7.46137 7.55876 7.93550 8.24401 8.40919 8.91689 9.12002 9.57157 11.05070 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020498 B = 0.003291 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.631406 B = 8505.803154 C = 9306.479150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.120 4.120 5 C -0.100 4.100 6 C -0.081 4.081 7 C 0.099 3.901 8 O -0.348 6.348 9 C 0.070 3.930 10 H 0.080 0.920 11 C -0.180 4.180 12 C 0.506 3.494 13 O -0.519 6.519 14 N -0.601 5.601 15 C 0.080 3.920 16 C 0.246 3.754 17 C -0.527 4.527 18 H 0.057 0.943 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.098 4.098 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.034 0.966 41 H 0.044 0.956 42 H 0.263 0.737 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.522 3.527 16.658 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.135 4.135 4 C -0.138 4.138 5 C -0.118 4.118 6 C -0.081 4.081 7 C 0.023 3.977 8 O -0.266 6.266 9 C 0.008 3.992 10 H 0.098 0.902 11 C -0.238 4.238 12 C 0.290 3.710 13 O -0.394 6.394 14 N -0.335 5.335 15 C -0.064 4.064 16 C 0.127 3.873 17 C -0.565 4.565 18 H 0.075 0.925 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.117 4.117 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.520 4.138 15.894 22.597 hybrid contribution 1.185 0.156 0.370 1.251 sum -14.335 4.294 16.264 22.101 Atomic orbital electron populations 1.20773 0.91189 1.02843 1.02111 1.19886 0.96059 0.93116 1.00401 1.21044 0.94301 0.97428 1.00745 1.21131 0.94290 0.98000 1.00349 1.21116 1.00233 0.91880 0.98548 1.19565 0.93574 0.94103 1.00860 1.21390 0.98325 0.93064 0.84955 1.88144 1.75578 1.38519 1.24389 1.21981 0.93697 0.85572 0.97941 0.90218 1.22473 0.99992 0.98336 1.02972 1.20034 0.80463 0.83577 0.86876 1.90695 1.64392 1.32839 1.51505 1.48081 1.45126 1.14966 1.25358 1.21810 1.02338 0.88976 0.93252 1.19301 0.89621 0.97823 0.80507 1.21434 0.97497 1.41945 0.95672 0.92488 1.24940 0.98934 0.95404 0.94852 1.69932 1.35299 1.47482 1.00662 0.86491 0.83810 0.79189 0.77906 1.20647 1.21056 1.19891 1.20913 0.93345 0.97686 0.99714 0.91336 0.91594 0.91502 0.86187 0.85892 0.85775 0.92398 0.92536 0.89809 0.92029 0.91316 0.93299 0.90656 0.92509 0.94829 0.93781 0.92699 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.01 0.36 -0.51 16 2 C -0.09 -1.01 5.88 -104.62 -0.62 -1.63 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 4 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 5 C -0.10 -1.28 9.70 -39.58 -0.38 -1.67 16 6 C -0.08 -1.06 5.51 -104.62 -0.58 -1.64 16 7 C 0.10 1.29 5.87 36.01 0.21 1.50 16 8 O -0.35 -6.06 9.50 -55.14 -0.52 -6.59 16 9 C 0.07 1.13 2.34 -27.88 -0.07 1.06 16 10 H 0.08 1.10 7.04 -51.93 -0.37 0.74 16 11 C -0.18 -2.28 9.16 37.16 0.34 -1.93 16 12 C 0.51 11.18 7.15 -10.99 -0.08 11.11 16 13 O -0.52 -14.25 16.08 -14.36 -0.23 -14.48 16 14 N -0.60 -12.99 2.86 -182.96 -0.52 -13.51 16 15 C 0.08 1.24 8.80 59.85 0.53 1.77 16 16 C 0.25 6.57 5.16 -5.20 -0.03 6.54 16 17 C -0.53 -15.16 9.39 -34.44 -0.32 -15.49 16 18 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 21 Si 0.90 22.10 29.54 -169.99 -5.02 17.07 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 C -0.10 -1.16 9.36 -39.58 -0.37 -1.53 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.06 0.69 8.03 -51.93 -0.42 0.27 16 33 H 0.06 0.59 7.81 -51.93 -0.41 0.18 16 34 H 0.08 0.94 4.54 -51.93 -0.24 0.71 16 35 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.64 6.95 -51.93 -0.36 0.28 16 38 H 0.07 1.19 8.07 -51.93 -0.42 0.78 16 39 H 0.06 0.71 6.01 -51.93 -0.31 0.39 16 40 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 41 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -35.72 358.75 -8.69 -44.40 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.65 Total: -1.98 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -1.88 Total: -4.14 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.21 Total: -39.69 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.75 Total: -21.07 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.72 -8.69 -44.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601013484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.955 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds