Wall clock time and date at job start Tue Mar 31 2020 06:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38213 * 119.99861 * 179.74627 * 3 2 1 5 5 C 1.38263 * 119.99917 * 0.53165 * 4 3 2 6 6 C 1.38216 * 119.99745 * 359.74585 * 5 4 3 7 7 C 1.50700 * 120.00020 * 180.02562 * 6 5 4 8 8 O 1.42898 * 109.47146 * 269.97731 * 7 6 5 9 9 C 1.42892 * 114.00205 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47214 * 329.99941 * 9 8 7 11 11 C 1.53001 * 109.47379 * 90.00128 * 9 8 7 12 12 C 1.50699 * 109.47456 * 210.00111 * 9 8 7 13 13 O 1.21287 * 119.99940 * 359.97438 * 12 9 8 14 14 N 1.34777 * 120.00456 * 179.97438 * 12 9 8 15 15 C 1.46500 * 119.99706 * 359.97438 * 14 12 9 16 16 C 1.46494 * 120.00239 * 179.97438 * 14 12 9 17 17 C 1.50696 * 109.47290 * 90.00358 * 16 14 12 18 18 H 1.08000 * 119.99881 * 359.97438 * 17 16 14 19 19 C 1.37876 * 120.00295 * 179.97438 * 17 16 14 20 20 N 1.31511 * 120.00165 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00059 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46570 * 90.00381 * 21 19 17 23 23 H 1.48503 * 109.46950 * 209.99695 * 21 19 17 24 24 H 1.48492 * 109.47204 * 330.00291 * 21 19 17 25 25 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 26 26 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 27 27 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 28 28 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 29 29 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.00647 * 180.29963 * 4 3 2 31 31 H 1.08002 * 119.99839 * 179.76522 * 5 4 3 32 32 H 1.09001 * 109.47196 * 29.97496 * 7 6 5 33 33 H 1.09001 * 109.47308 * 149.97936 * 7 6 5 34 34 H 1.08997 * 109.47640 * 180.02562 * 11 9 8 35 35 H 1.09004 * 109.46855 * 300.00258 * 11 9 8 36 36 H 1.09002 * 109.47101 * 59.99744 * 11 9 8 37 37 H 1.09005 * 109.47054 * 89.99911 * 15 14 12 38 38 H 1.08999 * 109.47326 * 209.99568 * 15 14 12 39 39 H 1.08994 * 109.47445 * 330.00293 * 15 14 12 40 40 H 1.09006 * 109.47285 * 210.00225 * 16 14 12 41 41 H 1.09003 * 109.47356 * 329.99752 * 16 14 12 42 42 H 0.97004 * 120.00428 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.00119 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0053 5 6 4.2718 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0063 7 6 4.3341 -2.5021 -0.0121 8 8 4.5723 -2.9086 -1.3611 9 6 5.2850 -4.1415 -1.4794 10 1 5.9464 -4.2626 -0.6215 11 6 4.2905 -5.3033 -1.5247 12 6 6.1019 -4.1300 -2.7457 13 8 6.0760 -3.1615 -3.4754 14 7 6.8614 -5.1959 -3.0675 15 6 6.8932 -6.3655 -2.1858 16 6 7.6551 -5.1849 -4.2987 17 6 9.0208 -4.6164 -4.0110 18 1 9.2722 -4.2950 -3.0111 19 6 9.9493 -4.5066 -5.0243 20 7 9.6434 -4.8985 -6.2419 21 14 11.6419 -3.8012 -4.6678 22 1 12.5636 -4.8987 -4.2790 23 1 12.1624 -3.1250 -5.8832 24 1 11.5453 -2.8194 -3.5580 25 6 2.1981 -1.1970 -0.0058 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3634 0.8925 -0.5094 28 1 -0.3633 -0.8875 -0.5181 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1326 0.0102 31 1 5.3518 0.0000 -0.0002 32 1 5.2865 -2.3741 0.5024 33 1 3.7450 -3.2640 0.4984 34 1 4.8341 -6.2437 -1.6145 35 1 3.6996 -5.3116 -0.6088 36 1 3.6291 -5.1821 -2.3826 37 1 6.1102 -7.0641 -2.4807 38 1 7.8645 -6.8539 -2.2650 39 1 6.7286 -6.0488 -1.1560 40 1 7.7572 -6.2031 -4.6743 41 1 7.1558 -4.5699 -5.0474 42 1 10.2965 -4.8209 -6.9549 43 1 1.6581 -2.1322 -0.0107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601013484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:31 Heat of formation + Delta-G solvation = -77.294597 kcal Electronic energy + Delta-G solvation = -22839.592723 eV Core-core repulsion = 19463.085017 eV Total energy + Delta-G solvation = -3376.507706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.08188 -40.34849 -38.53145 -36.65767 -34.91019 -34.07477 -32.93547 -31.91235 -29.48007 -27.90926 -27.65737 -27.03560 -25.71045 -23.77856 -23.00600 -21.66638 -20.31874 -18.74704 -18.24489 -17.78625 -17.35261 -17.02493 -16.71705 -16.44581 -15.97454 -15.75831 -15.44976 -14.85135 -14.59110 -14.40376 -14.21779 -14.02936 -13.97802 -13.67914 -13.45347 -13.35173 -13.15737 -13.02947 -12.87180 -12.81703 -12.62198 -12.43985 -12.31353 -12.18278 -11.93127 -11.79010 -11.69821 -10.89844 -10.65753 -10.34725 -9.79855 -9.55898 -9.45337 -8.24158 -6.39318 0.29817 0.45383 1.34854 1.38648 1.48744 1.76214 2.02380 2.37603 2.70517 3.05290 3.18483 3.58931 3.81916 3.85327 3.93959 4.02759 4.10193 4.21583 4.32016 4.35663 4.40412 4.52659 4.60302 4.62385 4.75274 4.79328 4.80507 4.85664 4.95122 4.96751 4.98420 5.14064 5.19962 5.25706 5.29650 5.51944 5.53266 5.63255 5.66141 5.79971 6.03618 6.07832 6.13594 6.68098 6.74426 7.25979 7.44609 8.83177 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020498 B = 0.003291 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.631406 B = 8505.803154 C = 9306.479150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.123 4.123 4 C -0.129 4.129 5 C -0.127 4.127 6 C -0.103 4.103 7 C 0.096 3.904 8 O -0.385 6.385 9 C 0.081 3.919 10 H 0.111 0.889 11 C -0.172 4.172 12 C 0.491 3.509 13 O -0.591 6.591 14 N -0.605 5.605 15 C 0.071 3.929 16 C 0.259 3.741 17 C -0.544 4.544 18 H 0.053 0.947 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.970 3.030 22 H -0.260 1.260 23 H -0.281 1.281 24 H -0.274 1.274 25 C -0.110 4.110 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.145 0.855 30 H 0.139 0.861 31 H 0.117 0.883 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.030 0.970 41 H -0.007 1.007 42 H 0.268 0.732 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.266 2.936 19.283 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.145 4.145 6 C -0.103 4.103 7 C 0.021 3.979 8 O -0.304 6.304 9 C 0.020 3.980 10 H 0.129 0.871 11 C -0.229 4.229 12 C 0.279 3.721 13 O -0.471 6.471 14 N -0.337 5.337 15 C -0.070 4.070 16 C 0.138 3.862 17 C -0.583 4.583 18 H 0.071 0.929 19 C -0.193 4.193 20 N -0.568 5.568 21 Si 0.794 3.206 22 H -0.184 1.184 23 H -0.206 1.206 24 H -0.199 1.199 25 C -0.128 4.128 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.163 0.837 30 H 0.157 0.843 31 H 0.135 0.865 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.048 0.952 41 H 0.011 0.989 42 H 0.077 0.923 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.275 3.491 18.572 24.939 hybrid contribution 1.347 0.369 -0.450 1.468 sum -14.928 3.861 18.121 23.794 Atomic orbital electron populations 1.20826 0.89001 1.03557 1.03323 1.20310 0.97768 0.92813 0.99163 1.21406 0.94122 0.98626 0.99900 1.21411 0.95068 0.98181 0.99981 1.21283 1.00259 0.92891 1.00057 1.19774 0.94435 0.94259 1.01829 1.21617 0.99261 0.93899 0.83153 1.88105 1.75678 1.39265 1.27348 1.21959 0.94373 0.86770 0.94920 0.87122 1.22463 0.99210 0.97104 1.04104 1.21293 0.80181 0.82300 0.88332 1.90646 1.66737 1.35467 1.54255 1.48090 1.44044 1.17008 1.24583 1.22203 1.03365 0.87280 0.94176 1.18779 0.89229 0.96155 0.82056 1.21701 0.98561 1.42360 0.95674 0.92851 1.25893 1.03288 0.95540 0.94552 1.70052 1.36857 1.48308 1.01629 0.85388 0.78792 0.78796 0.77665 1.18435 1.20647 1.19886 1.21176 0.93014 0.98899 0.99749 0.89750 0.90580 0.91132 0.83722 0.84278 0.86451 0.91798 0.89365 0.88061 0.88263 0.93205 0.90178 0.91152 0.88556 0.95227 0.98864 0.92339 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 71.24 0.71 -0.74 16 2 C -0.10 -2.00 5.88 -19.86 -0.12 -2.11 16 3 C -0.12 -2.42 9.70 22.27 0.22 -2.20 16 4 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 5 C -0.13 -3.33 9.70 22.27 0.22 -3.11 16 6 C -0.10 -2.66 5.51 -19.87 -0.11 -2.77 16 7 C 0.10 2.36 5.87 71.24 0.42 2.78 16 8 O -0.38 -13.23 9.50 -129.94 -1.23 -14.47 16 9 C 0.08 2.49 2.34 29.85 0.07 2.56 16 10 H 0.11 2.69 7.04 -2.39 -0.02 2.68 16 11 C -0.17 -3.79 9.16 71.98 0.66 -3.13 16 12 C 0.49 22.15 7.15 87.66 0.63 22.78 16 13 O -0.59 -34.35 16.08 15.98 0.26 -34.10 16 14 N -0.60 -26.37 2.86 -851.14 -2.43 -28.80 16 15 C 0.07 2.04 8.80 127.77 1.12 3.16 16 16 C 0.26 14.43 5.16 85.63 0.44 14.87 16 17 C -0.54 -32.19 9.39 25.60 0.24 -31.95 16 18 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 19 C 0.01 0.36 5.46 84.65 0.46 0.83 16 20 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 21 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 25 C -0.11 -2.48 9.36 22.27 0.21 -2.27 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 28 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 29 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.12 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.06 1.44 8.03 -2.39 -0.02 1.42 16 33 H 0.09 1.55 7.81 -2.39 -0.02 1.53 16 34 H 0.10 1.85 4.54 -2.39 -0.01 1.84 16 35 H 0.10 1.49 7.87 -2.38 -0.02 1.47 16 36 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.82 6.95 -2.38 -0.02 1.81 16 38 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 39 H 0.10 2.00 6.01 -2.39 -0.01 1.99 16 40 H 0.03 1.64 8.07 -2.38 -0.02 1.62 16 41 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 42 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -83.39 358.75 5.28 -78.11 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.98 Total: 12.51 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 5.39 Total: -3.94 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -2.15 Total: -85.83 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -0.98 Total: -48.57 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -83.39 5.28 -78.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601013484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.815 kcal (2) G-P(sol) polarization free energy of solvation -83.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds