Wall clock time and date at job start Tue Mar 31 2020 06:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38264 * 119.99563 * 2 1 4 4 C 1.38214 * 119.99461 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00128 * 359.77061 * 4 3 2 6 6 C 1.38212 * 120.00035 * 0.45943 * 5 4 3 7 7 C 1.50704 * 119.99987 * 179.78970 * 6 5 4 8 8 O 1.42900 * 109.46831 * 269.72732 * 7 6 5 9 9 C 1.42906 * 113.99734 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46842 * 30.00509 * 9 8 7 11 11 C 1.52997 * 109.47321 * 270.00521 * 9 8 7 12 12 C 1.50697 * 109.46831 * 150.00157 * 9 8 7 13 13 O 1.21277 * 120.00325 * 5.00647 * 12 9 8 14 14 N 1.34774 * 119.99710 * 185.00150 * 12 9 8 15 15 C 1.46505 * 120.00004 * 180.02562 * 14 12 9 16 16 H 1.08999 * 109.47123 * 324.99906 * 15 14 12 17 17 C 1.52992 * 109.47260 * 85.00120 * 15 14 12 18 18 C 1.50698 * 109.47350 * 205.00181 * 15 14 12 19 19 H 1.08009 * 120.00146 * 359.97438 * 18 15 14 20 20 C 1.37873 * 120.00500 * 180.02562 * 18 15 14 21 21 N 1.31522 * 119.99504 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00543 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.46847 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47527 * 119.99869 * 22 20 18 25 25 H 1.48498 * 109.46982 * 240.00101 * 22 20 18 26 26 C 1.38207 * 119.99851 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.46687 * 270.01714 * 1 2 3 28 28 H 1.08991 * 109.47177 * 30.02057 * 1 2 3 29 29 H 1.08995 * 109.46683 * 150.02137 * 1 2 3 30 30 H 1.07994 * 120.00240 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99582 * 179.97438 * 4 3 2 32 32 H 1.07997 * 119.99920 * 180.25979 * 5 4 3 33 33 H 1.09000 * 109.47103 * 149.73018 * 7 6 5 34 34 H 1.08995 * 109.46761 * 29.73083 * 7 6 5 35 35 H 1.09002 * 109.47153 * 299.99798 * 11 9 8 36 36 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 37 37 H 1.09004 * 109.47261 * 59.99970 * 11 9 8 38 38 H 0.96997 * 120.00628 * 0.02562 * 14 12 9 39 39 H 1.08996 * 109.47562 * 180.02562 * 17 15 14 40 40 H 1.09008 * 109.47315 * 300.00274 * 17 15 14 41 41 H 1.08999 * 109.47228 * 59.99849 * 17 15 14 42 42 H 0.97002 * 119.99497 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.00717 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1975 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0001 0.0037 6 6 3.5807 -1.1969 -0.0011 7 6 4.3343 -2.5020 -0.0012 8 8 4.5714 -2.9148 -1.3486 9 6 5.2842 -4.1483 -1.4616 10 1 5.0564 -4.7795 -0.6026 11 6 6.7875 -3.8667 -1.5031 12 6 4.8700 -4.8536 -2.7272 13 8 4.1150 -4.3099 -3.5052 14 7 5.3386 -6.0886 -2.9946 15 6 4.9364 -6.7742 -4.2253 16 1 3.9045 -6.5168 -4.4640 17 6 5.8492 -6.3388 -5.3733 18 6 5.0502 -8.2642 -4.0306 19 1 5.3887 -8.6609 -3.0848 20 6 4.7232 -9.1210 -5.0600 21 7 4.3115 -8.6379 -6.2119 22 14 4.8636 -10.9680 -4.8184 23 1 5.3456 -11.2520 -3.4428 24 1 3.5325 -11.5958 -5.0165 25 1 5.8249 -11.5245 -5.8040 26 6 2.1981 -1.1969 0.0005 27 1 -0.3632 0.0003 1.0276 28 1 -0.3633 0.8897 -0.5141 29 1 -0.3632 -0.8902 -0.5135 30 1 1.6583 2.1327 -0.0004 31 1 4.1204 2.1328 -0.0010 32 1 5.3517 0.0001 0.0075 33 1 3.7456 -3.2615 0.5132 34 1 5.2870 -2.3714 0.5119 35 1 7.0153 -3.2355 -2.3621 36 1 7.3311 -4.8076 -1.5888 37 1 7.0871 -3.3565 -0.5876 38 1 5.9422 -6.5237 -2.3723 39 1 5.5497 -6.8484 -6.2890 40 1 5.7669 -5.2610 -5.5142 41 1 6.8811 -6.5962 -5.1347 42 1 4.0817 -9.2408 -6.9363 43 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601022595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:00 Heat of formation + Delta-G solvation = -71.929108 kcal Electronic energy + Delta-G solvation = -22600.825391 eV Core-core repulsion = 19224.550351 eV Total energy + Delta-G solvation = -3376.275041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.73866 -39.11490 -37.27440 -34.70474 -33.29645 -32.54794 -31.93787 -30.77325 -28.56406 -27.17484 -26.22045 -25.24896 -23.92272 -22.21749 -21.00343 -20.79411 -19.33755 -17.42176 -16.93511 -16.46509 -15.91754 -15.75696 -15.11497 -15.01828 -14.73586 -14.32532 -13.87397 -13.85205 -13.51682 -13.20917 -12.91716 -12.81935 -12.45166 -12.39088 -12.27421 -12.06310 -11.96610 -11.61668 -11.34257 -11.11499 -11.09278 -10.94653 -10.89735 -10.68964 -10.29285 -10.23298 -9.74524 -9.03047 -8.97759 -8.80724 -8.70902 -8.53773 -7.89250 -6.11893 -4.21327 1.15882 1.29368 3.23534 3.29020 3.32232 3.34689 3.40260 3.82806 4.28959 4.43555 4.63458 4.71966 4.82021 4.98275 5.03738 5.10895 5.16361 5.20085 5.26677 5.30022 5.39217 5.42580 5.44879 5.55896 5.67829 5.68892 5.81623 5.93422 6.01565 6.18629 6.33222 6.45029 6.51479 6.84120 6.89040 6.99160 7.14583 7.18719 7.47721 7.59204 7.71036 7.93378 8.16108 8.67401 8.79767 9.15285 9.46395 10.94125 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025748 B = 0.002870 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.181300 B = 9755.149975 C =10198.489762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.117 4.117 4 C -0.122 4.122 5 C -0.104 4.104 6 C -0.081 4.081 7 C 0.099 3.901 8 O -0.348 6.348 9 C 0.067 3.933 10 H 0.080 0.920 11 C -0.167 4.167 12 C 0.502 3.498 13 O -0.533 6.533 14 N -0.708 5.708 15 C 0.265 3.735 16 H 0.048 0.952 17 C -0.147 4.147 18 C -0.533 4.533 19 H 0.062 0.938 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.902 3.098 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.095 4.095 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.388 0.612 39 H 0.090 0.910 40 H 0.015 0.985 41 H 0.026 0.974 42 H 0.264 0.736 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 15.282 15.689 21.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.140 4.140 5 C -0.122 4.122 6 C -0.081 4.081 7 C 0.022 3.978 8 O -0.266 6.266 9 C 0.006 3.994 10 H 0.098 0.902 11 C -0.225 4.225 12 C 0.285 3.715 13 O -0.410 6.410 14 N -0.358 5.358 15 C 0.164 3.836 16 H 0.066 0.934 17 C -0.206 4.206 18 C -0.571 4.571 19 H 0.080 0.920 20 C -0.138 4.138 21 N -0.520 5.520 22 Si 0.730 3.270 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.113 4.113 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.220 0.780 39 H 0.109 0.891 40 H 0.034 0.966 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.566 15.706 14.749 21.553 hybrid contribution 0.552 -1.363 0.548 1.569 sum -0.015 14.343 15.297 20.969 Atomic orbital electron populations 1.20793 0.91103 1.03033 1.02183 1.19920 0.96190 0.93063 0.99937 1.21047 0.94308 0.97434 1.00763 1.21094 0.94306 0.97873 1.00688 1.21028 0.99878 0.91874 0.99440 1.19569 0.93657 0.94034 1.00869 1.21397 0.98103 0.93295 0.84994 1.88158 1.76256 1.37769 1.24443 1.22035 0.92639 0.86869 0.97901 0.90184 1.22200 0.94122 1.03140 1.03052 1.20146 0.81761 0.82484 0.87078 1.90678 1.35588 1.65647 1.49099 1.46471 1.48268 1.15517 1.25497 1.18747 0.95553 0.90404 0.78899 0.93376 1.22078 0.98298 0.97360 1.02848 1.21251 1.46423 0.90130 0.99331 0.92019 1.24900 0.94697 0.99233 0.94953 1.69924 1.43917 1.34891 1.03297 0.86387 0.77789 0.84683 0.78186 1.19751 1.20880 1.20878 1.20990 0.93470 0.97894 0.98986 0.91268 0.91558 0.91281 0.86179 0.86002 0.86010 0.92406 0.92454 0.91187 0.90783 0.91906 0.78016 0.89139 0.96612 0.95450 0.92620 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.09 -1.00 5.88 -104.62 -0.62 -1.62 16 3 C -0.12 -1.19 9.70 -39.58 -0.38 -1.58 16 4 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 5 C -0.10 -1.18 9.70 -39.58 -0.38 -1.56 16 6 C -0.08 -1.03 5.51 -104.62 -0.58 -1.60 16 7 C 0.10 1.22 5.87 36.01 0.21 1.43 16 8 O -0.35 -5.81 9.51 -55.09 -0.52 -6.33 16 9 C 0.07 1.04 3.13 -27.89 -0.09 0.95 16 10 H 0.08 1.02 7.79 -51.93 -0.40 0.62 16 11 C -0.17 -2.09 9.48 37.16 0.35 -1.74 16 12 C 0.50 10.53 7.14 -10.99 -0.08 10.45 16 13 O -0.53 -13.84 16.17 -14.30 -0.23 -14.07 16 14 N -0.71 -14.90 5.03 -54.94 -0.28 -15.18 16 15 C 0.27 6.86 2.56 -69.08 -0.18 6.68 16 16 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 17 C -0.15 -3.73 9.26 37.15 0.34 -3.39 16 18 C -0.53 -14.15 8.73 -34.44 -0.30 -14.45 16 19 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 21 N -0.88 -25.06 11.32 55.43 0.63 -24.43 16 22 Si 0.90 20.63 29.54 -169.99 -5.02 15.60 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C -0.10 -1.18 9.36 -39.58 -0.37 -1.55 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 29 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.06 0.64 8.03 -51.93 -0.42 0.23 16 34 H 0.06 0.57 7.81 -51.93 -0.41 0.17 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.84 7.93 -51.93 -0.41 0.43 16 37 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 38 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 39 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 40 H 0.01 0.38 8.14 -51.92 -0.42 -0.05 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -33.12 362.98 -9.01 -42.13 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.86 Total: 5.37 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.20 Total: -8.57 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.35 Total: -39.61 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.76 Total: -20.40 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.12 -9.01 -42.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601022595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.797 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds