Wall clock time and date at job start Tue Mar 31 2020 06:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38264 * 119.99563 * 2 1 4 4 C 1.38214 * 119.99461 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00128 * 359.77061 * 4 3 2 6 6 C 1.38212 * 120.00035 * 0.45943 * 5 4 3 7 7 C 1.50704 * 119.99987 * 179.78970 * 6 5 4 8 8 O 1.42900 * 109.46831 * 269.72732 * 7 6 5 9 9 C 1.42906 * 113.99734 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46842 * 30.00509 * 9 8 7 11 11 C 1.52997 * 109.47321 * 270.00521 * 9 8 7 12 12 C 1.50697 * 109.46831 * 150.00157 * 9 8 7 13 13 O 1.21277 * 120.00325 * 5.00647 * 12 9 8 14 14 N 1.34774 * 119.99710 * 185.00150 * 12 9 8 15 15 C 1.46505 * 120.00004 * 180.02562 * 14 12 9 16 16 H 1.08999 * 109.47123 * 324.99906 * 15 14 12 17 17 C 1.52992 * 109.47260 * 85.00120 * 15 14 12 18 18 C 1.50698 * 109.47350 * 205.00181 * 15 14 12 19 19 H 1.08009 * 120.00146 * 359.97438 * 18 15 14 20 20 C 1.37873 * 120.00500 * 180.02562 * 18 15 14 21 21 N 1.31522 * 119.99504 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00543 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.46847 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47527 * 119.99869 * 22 20 18 25 25 H 1.48498 * 109.46982 * 240.00101 * 22 20 18 26 26 C 1.38207 * 119.99851 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.46687 * 270.01714 * 1 2 3 28 28 H 1.08991 * 109.47177 * 30.02057 * 1 2 3 29 29 H 1.08995 * 109.46683 * 150.02137 * 1 2 3 30 30 H 1.07994 * 120.00240 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99582 * 179.97438 * 4 3 2 32 32 H 1.07997 * 119.99920 * 180.25979 * 5 4 3 33 33 H 1.09000 * 109.47103 * 149.73018 * 7 6 5 34 34 H 1.08995 * 109.46761 * 29.73083 * 7 6 5 35 35 H 1.09002 * 109.47153 * 299.99798 * 11 9 8 36 36 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 37 37 H 1.09004 * 109.47261 * 59.99970 * 11 9 8 38 38 H 0.96997 * 120.00628 * 0.02562 * 14 12 9 39 39 H 1.08996 * 109.47562 * 180.02562 * 17 15 14 40 40 H 1.09008 * 109.47315 * 300.00274 * 17 15 14 41 41 H 1.08999 * 109.47228 * 59.99849 * 17 15 14 42 42 H 0.97002 * 119.99497 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.00717 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1975 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0001 0.0037 6 6 3.5807 -1.1969 -0.0011 7 6 4.3343 -2.5020 -0.0012 8 8 4.5714 -2.9148 -1.3486 9 6 5.2842 -4.1483 -1.4616 10 1 5.0564 -4.7795 -0.6026 11 6 6.7875 -3.8667 -1.5031 12 6 4.8700 -4.8536 -2.7272 13 8 4.1150 -4.3099 -3.5052 14 7 5.3386 -6.0886 -2.9946 15 6 4.9364 -6.7742 -4.2253 16 1 3.9045 -6.5168 -4.4640 17 6 5.8492 -6.3388 -5.3733 18 6 5.0502 -8.2642 -4.0306 19 1 5.3887 -8.6609 -3.0848 20 6 4.7232 -9.1210 -5.0600 21 7 4.3115 -8.6379 -6.2119 22 14 4.8636 -10.9680 -4.8184 23 1 5.3456 -11.2520 -3.4428 24 1 3.5325 -11.5958 -5.0165 25 1 5.8249 -11.5245 -5.8040 26 6 2.1981 -1.1969 0.0005 27 1 -0.3632 0.0003 1.0276 28 1 -0.3633 0.8897 -0.5141 29 1 -0.3632 -0.8902 -0.5135 30 1 1.6583 2.1327 -0.0004 31 1 4.1204 2.1328 -0.0010 32 1 5.3517 0.0001 0.0075 33 1 3.7456 -3.2615 0.5132 34 1 5.2870 -2.3714 0.5119 35 1 7.0153 -3.2355 -2.3621 36 1 7.3311 -4.8076 -1.5888 37 1 7.0871 -3.3565 -0.5876 38 1 5.9422 -6.5237 -2.3723 39 1 5.5497 -6.8484 -6.2890 40 1 5.7669 -5.2610 -5.5142 41 1 6.8811 -6.5962 -5.1347 42 1 4.0817 -9.2408 -6.9363 43 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601022595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:59 Heat of formation + Delta-G solvation = -91.920439 kcal Electronic energy + Delta-G solvation = -22601.692281 eV Core-core repulsion = 19224.550351 eV Total energy + Delta-G solvation = -3377.141930 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.95878 -40.32392 -38.57249 -36.66027 -34.50630 -34.05695 -32.97082 -31.98456 -30.35371 -27.94754 -27.35208 -27.11473 -25.27515 -23.03316 -22.81098 -21.64189 -21.11374 -19.09580 -18.10647 -17.64200 -17.31551 -16.95860 -16.76486 -16.28382 -16.00124 -15.70000 -15.29841 -14.80800 -14.62062 -14.44467 -14.25341 -13.99424 -13.88511 -13.64391 -13.36578 -13.15141 -12.99395 -12.92045 -12.84414 -12.79519 -12.73808 -12.37437 -12.28614 -12.11154 -11.92624 -11.77394 -11.10519 -10.95085 -10.63853 -10.36699 -9.79554 -9.78285 -9.54948 -8.17865 -6.35942 0.31001 0.46398 1.45061 1.45652 1.58111 1.75821 2.10295 2.42563 2.77445 3.12495 3.23252 3.76236 3.82960 3.91936 3.99470 4.05706 4.13006 4.21803 4.34089 4.36941 4.50758 4.60283 4.71494 4.73780 4.80145 4.80863 4.84072 4.90680 4.96195 5.08227 5.12820 5.21319 5.28401 5.41676 5.52994 5.59667 5.63334 5.66301 5.67506 5.86858 6.08129 6.09274 6.15966 6.72094 6.95340 7.31760 7.54109 8.88939 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025748 B = 0.002870 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.181300 B = 9755.149975 C =10198.489762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.103 4.103 3 C -0.123 4.123 4 C -0.125 4.125 5 C -0.116 4.116 6 C -0.104 4.104 7 C 0.096 3.904 8 O -0.383 6.383 9 C 0.077 3.923 10 H 0.114 0.886 11 C -0.160 4.160 12 C 0.494 3.506 13 O -0.593 6.593 14 N -0.699 5.699 15 C 0.271 3.729 16 H -0.006 1.006 17 C -0.134 4.134 18 C -0.545 4.545 19 H 0.077 0.923 20 C 0.012 3.988 21 N -0.919 5.919 22 Si 0.976 3.024 23 H -0.257 1.257 24 H -0.285 1.285 25 H -0.279 1.279 26 C -0.121 4.121 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.137 0.863 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.407 0.593 39 H 0.066 0.934 40 H 0.007 0.993 41 H 0.045 0.955 42 H 0.265 0.735 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.561 15.359 18.099 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.103 4.103 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.134 4.134 6 C -0.104 4.104 7 C 0.020 3.980 8 O -0.302 6.302 9 C 0.016 3.984 10 H 0.132 0.868 11 C -0.218 4.218 12 C 0.280 3.720 13 O -0.474 6.474 14 N -0.349 5.349 15 C 0.167 3.833 16 H 0.012 0.988 17 C -0.192 4.192 18 C -0.583 4.583 19 H 0.095 0.905 20 C -0.188 4.188 21 N -0.558 5.558 22 Si 0.800 3.200 23 H -0.181 1.181 24 H -0.211 1.211 25 H -0.204 1.204 26 C -0.139 4.139 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.155 0.845 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.243 0.757 39 H 0.085 0.915 40 H 0.027 0.973 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.905 15.781 17.215 23.371 hybrid contribution 0.041 -1.288 -0.199 1.304 sum 0.946 14.494 17.016 22.372 Atomic orbital electron populations 1.20829 0.89682 1.03276 1.03193 1.20258 0.97488 0.93040 0.99553 1.21410 0.94689 0.98073 0.99881 1.21476 0.94601 0.98634 0.99538 1.21306 1.00824 0.91856 0.99367 1.19789 0.93904 0.94833 1.01891 1.21619 0.99731 0.93392 0.83238 1.88117 1.76782 1.37990 1.27345 1.21999 0.94239 0.86875 0.95240 0.86801 1.22200 0.91574 1.03988 1.04037 1.21270 0.80255 0.81966 0.88463 1.90646 1.38173 1.66931 1.51641 1.46182 1.48516 1.15758 1.24485 1.18350 0.92822 0.91078 0.81018 0.98825 1.21900 0.99072 0.96442 1.01834 1.21573 1.46353 0.90335 1.00009 0.90457 1.25858 0.94138 1.04277 0.94549 1.70081 1.44754 1.36681 1.04270 0.85242 0.77531 0.78380 0.78837 1.18057 1.21115 1.20428 1.21158 0.93964 0.98403 1.00416 0.89820 0.90267 0.92064 0.83730 0.83404 0.84488 0.91654 0.89510 0.93145 0.89289 0.88341 0.75691 0.91489 0.97342 0.93642 0.92561 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 10.01 71.24 0.71 -1.14 16 2 C -0.10 -2.23 5.88 -19.86 -0.12 -2.35 16 3 C -0.12 -2.30 9.70 22.27 0.22 -2.08 16 4 C -0.12 -2.31 10.05 22.27 0.22 -2.08 16 5 C -0.12 -2.46 9.70 22.27 0.22 -2.24 16 6 C -0.10 -2.58 5.51 -19.86 -0.11 -2.69 16 7 C 0.10 2.24 5.87 71.24 0.42 2.66 16 8 O -0.38 -12.57 9.51 -129.99 -1.24 -13.80 16 9 C 0.08 2.28 3.13 29.85 0.09 2.37 16 10 H 0.11 2.56 7.79 -2.39 -0.02 2.55 16 11 C -0.16 -3.57 9.48 71.98 0.68 -2.88 16 12 C 0.49 20.96 7.14 87.66 0.63 21.59 16 13 O -0.59 -32.26 16.17 15.97 0.26 -32.00 16 14 N -0.70 -29.36 5.03 -446.11 -2.24 -31.60 16 15 C 0.27 14.36 2.56 44.24 0.11 14.47 16 16 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 17 C -0.13 -6.96 9.26 71.98 0.67 -6.29 16 18 C -0.54 -28.85 8.73 25.60 0.22 -28.63 16 19 H 0.08 3.77 7.74 -2.91 -0.02 3.74 16 20 C 0.01 0.63 5.30 84.65 0.45 1.07 16 21 N -0.92 -53.41 11.32 21.45 0.24 -53.17 16 22 Si 0.98 41.89 29.54 68.60 2.03 43.91 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 24 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 26 C -0.12 -3.06 9.36 22.27 0.21 -2.85 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 29 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 30 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 31 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.07 1.38 8.03 -2.39 -0.02 1.36 16 34 H 0.09 1.47 7.81 -2.39 -0.02 1.45 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.71 7.93 -2.39 -0.02 1.69 16 37 H 0.10 1.52 7.87 -2.38 -0.02 1.50 16 38 H 0.41 13.76 8.32 -92.71 -0.77 12.99 16 39 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 40 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 41 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.12 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -75.42 362.98 3.89 -71.54 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.22 Total: 26.21 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.62 Total: -11.09 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -2.00 Total: -84.77 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -0.98 Total: -45.80 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -75.42 3.89 -71.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601022595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.385 kcal (2) G-P(sol) polarization free energy of solvation -75.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds