Wall clock time and date at job start Tue Mar 31 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38259 * 119.99573 * 0.44536 * 4 3 2 6 6 C 1.38216 * 120.00111 * 359.80820 * 5 4 3 7 7 C 1.50702 * 120.00031 * 179.97438 * 6 5 4 8 8 O 1.42889 * 109.47313 * 269.98118 * 7 6 5 9 9 C 1.42900 * 114.00158 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.47073 * 330.00201 * 9 8 7 11 11 C 1.53007 * 109.46839 * 89.99936 * 9 8 7 12 12 C 1.50696 * 109.47596 * 210.00201 * 9 8 7 13 13 O 1.21278 * 120.00172 * 0.02562 * 12 9 8 14 14 N 1.34778 * 120.00212 * 179.97438 * 12 9 8 15 15 C 1.46500 * 119.99997 * 179.97438 * 14 12 9 16 16 H 1.08992 * 109.47267 * 325.00059 * 15 14 12 17 17 C 1.53004 * 109.46913 * 85.00436 * 15 14 12 18 18 C 1.50705 * 109.47140 * 205.00049 * 15 14 12 19 19 H 1.08004 * 119.99864 * 0.02562 * 18 15 14 20 20 C 1.37876 * 119.99992 * 179.97438 * 18 15 14 21 21 N 1.31512 * 119.99967 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 119.99718 * 179.97438 * 20 18 15 23 23 H 1.48494 * 109.47399 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46927 * 120.00872 * 22 20 18 25 25 H 1.48503 * 109.47323 * 240.00198 * 22 20 18 26 26 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 27 27 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 29 29 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 30 30 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.00183 * 180.27524 * 4 3 2 32 32 H 1.07993 * 119.99526 * 179.83297 * 5 4 3 33 33 H 1.09003 * 109.46422 * 29.98264 * 7 6 5 34 34 H 1.08998 * 109.46589 * 149.97838 * 7 6 5 35 35 H 1.08998 * 109.46789 * 180.02562 * 11 9 8 36 36 H 1.08999 * 109.47053 * 299.99964 * 11 9 8 37 37 H 1.08997 * 109.46823 * 60.00625 * 11 9 8 38 38 H 0.97001 * 119.99533 * 0.02562 * 14 12 9 39 39 H 1.08996 * 109.47116 * 60.00066 * 17 15 14 40 40 H 1.08999 * 109.46783 * 180.02562 * 17 15 14 41 41 H 1.09002 * 109.46705 * 299.99951 * 17 15 14 42 42 H 0.97000 * 119.99846 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.00154 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2718 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0058 7 6 4.3341 -2.5021 -0.0117 8 8 4.5718 -2.9088 -1.3608 9 6 5.2845 -4.1417 -1.4792 10 1 5.9462 -4.2627 -0.6215 11 6 4.2898 -5.3035 -1.5239 12 6 6.1009 -4.1304 -2.7458 13 8 6.0754 -3.1618 -3.4751 14 7 6.8602 -5.1964 -3.0676 15 6 7.6535 -5.1857 -4.2992 16 1 7.1120 -4.6450 -5.0754 17 6 8.9934 -4.4952 -4.0367 18 6 7.8984 -6.6022 -4.7514 19 1 7.5024 -7.4280 -4.1789 20 6 8.6272 -6.8441 -5.8966 21 7 9.1089 -5.8386 -6.5940 22 14 8.9313 -8.6000 -6.4566 23 1 8.2886 -9.5415 -5.5050 24 1 8.3541 -8.7946 -7.8109 25 1 10.3928 -8.8598 -6.4996 26 6 2.1981 -1.1970 -0.0058 27 1 -0.3633 -0.0050 1.0277 28 1 -0.3634 0.8925 -0.5094 29 1 -0.3633 -0.8875 -0.5181 30 1 1.6583 2.1326 0.0004 31 1 4.1205 2.1326 0.0089 32 1 5.3517 0.0000 0.0002 33 1 5.2867 -2.3739 0.5023 34 1 3.7452 -3.2639 0.4991 35 1 4.8334 -6.2439 -1.6137 36 1 3.6993 -5.3117 -0.6077 37 1 3.6282 -5.1825 -2.3816 38 1 6.8809 -5.9710 -2.4841 39 1 9.5349 -5.0360 -3.2606 40 1 9.5834 -4.4868 -4.9532 41 1 8.8162 -3.4707 -3.7096 42 1 9.6219 -6.0088 -7.3995 43 1 1.6581 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601022596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:03 Heat of formation + Delta-G solvation = -71.773124 kcal Electronic energy + Delta-G solvation = -22579.231548 eV Core-core repulsion = 19202.963271 eV Total energy + Delta-G solvation = -3376.268277 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.74366 -39.11764 -37.27532 -34.70436 -33.32099 -32.55801 -31.92793 -30.79389 -28.51953 -27.17970 -26.23213 -25.25868 -23.95020 -22.20190 -20.97752 -20.82111 -19.34703 -17.45343 -16.88693 -16.47246 -15.94833 -15.70691 -15.22010 -14.99123 -14.73834 -14.29143 -13.92687 -13.78595 -13.51094 -13.21662 -13.05023 -12.76570 -12.50186 -12.40521 -12.14329 -12.07608 -11.99838 -11.70438 -11.27388 -11.14042 -11.09452 -10.95496 -10.86389 -10.71051 -10.28843 -10.23454 -9.74269 -9.03122 -8.99494 -8.79470 -8.71822 -8.53732 -7.89028 -6.11638 -4.20949 1.15750 1.28753 3.23865 3.27442 3.32344 3.35134 3.42035 3.83118 4.29074 4.42914 4.62538 4.71016 4.81713 4.98143 5.01437 5.13002 5.13655 5.20474 5.25266 5.29913 5.37221 5.39802 5.43680 5.55394 5.63284 5.70462 5.82972 5.91596 5.99874 6.21525 6.34809 6.43293 6.51016 6.83501 6.88657 6.98058 7.15247 7.17861 7.47663 7.59282 7.71056 7.93304 8.15992 8.67520 8.80032 9.15365 9.46705 10.94442 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032569 B = 0.002747 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.502004 B =10189.821742 C =10514.821250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.117 4.117 4 C -0.120 4.120 5 C -0.100 4.100 6 C -0.082 4.082 7 C 0.099 3.901 8 O -0.348 6.348 9 C 0.067 3.933 10 H 0.080 0.920 11 C -0.168 4.168 12 C 0.502 3.498 13 O -0.534 6.534 14 N -0.707 5.707 15 C 0.265 3.735 16 H 0.049 0.951 17 C -0.147 4.147 18 C -0.532 4.532 19 H 0.062 0.938 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.902 3.098 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.098 4.098 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.388 0.612 39 H 0.026 0.974 40 H 0.090 0.910 41 H 0.014 0.986 42 H 0.264 0.736 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.843 7.717 17.016 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.135 4.135 4 C -0.138 4.138 5 C -0.118 4.118 6 C -0.082 4.082 7 C 0.022 3.978 8 O -0.266 6.266 9 C 0.006 3.994 10 H 0.098 0.902 11 C -0.226 4.226 12 C 0.285 3.715 13 O -0.410 6.410 14 N -0.357 5.357 15 C 0.164 3.836 16 H 0.066 0.934 17 C -0.206 4.206 18 C -0.571 4.571 19 H 0.080 0.920 20 C -0.138 4.138 21 N -0.521 5.521 22 Si 0.730 3.270 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.116 4.116 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.220 0.780 39 H 0.045 0.955 40 H 0.109 0.891 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.801 8.567 16.127 22.301 hybrid contribution 0.399 -1.450 0.136 1.510 sum -12.402 7.117 16.263 21.655 Atomic orbital electron populations 1.20779 0.91171 1.02878 1.02137 1.19893 0.96084 0.93110 1.00303 1.21049 0.94305 0.97438 1.00714 1.21127 0.94296 0.97980 1.00398 1.21092 1.00152 0.91877 0.98703 1.19571 0.93597 0.94108 1.00895 1.21390 0.98317 0.93089 0.84956 1.88153 1.75624 1.38474 1.24371 1.22037 0.93862 0.85669 0.97845 0.90175 1.22217 0.99934 0.97410 1.03051 1.20151 0.80482 0.84076 0.86773 1.90679 1.64976 1.33717 1.51663 1.46474 1.45816 1.16803 1.26646 1.18752 0.87673 0.96571 0.80633 0.93351 1.22083 1.00118 0.96223 1.02175 1.21245 1.34724 0.91290 1.09804 0.92008 1.24900 0.95236 0.97534 0.96128 1.69917 1.35377 1.30305 1.16453 0.86387 0.77932 0.84084 0.78640 1.19747 1.20884 1.20888 1.20923 0.93359 0.97716 0.99615 0.91314 0.91579 0.91469 0.86177 0.85905 0.85837 0.92414 0.92492 0.90712 0.91966 0.91111 0.78004 0.95465 0.89120 0.96650 0.92620 0.86004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.09 -0.98 5.88 -104.62 -0.62 -1.59 16 3 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 4 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 5 C -0.10 -1.22 9.70 -39.58 -0.38 -1.60 16 6 C -0.08 -1.03 5.51 -104.62 -0.58 -1.61 16 7 C 0.10 1.22 5.87 36.01 0.21 1.43 16 8 O -0.35 -5.80 9.50 -55.14 -0.52 -6.33 16 9 C 0.07 1.04 3.14 -27.88 -0.09 0.96 16 10 H 0.08 1.01 7.79 -51.93 -0.40 0.61 16 11 C -0.17 -2.14 9.42 37.16 0.35 -1.79 16 12 C 0.50 10.53 7.20 -10.99 -0.08 10.45 16 13 O -0.53 -13.84 16.16 -14.35 -0.23 -14.07 16 14 N -0.71 -14.89 4.96 -54.93 -0.27 -15.17 16 15 C 0.27 6.85 2.56 -69.08 -0.18 6.67 16 16 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 17 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 18 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 19 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 21 N -0.88 -25.08 11.32 55.43 0.63 -24.45 16 22 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C -0.10 -1.13 9.36 -39.58 -0.37 -1.50 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 29 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.06 0.64 8.03 -51.93 -0.42 0.22 16 34 H 0.06 0.57 7.81 -51.93 -0.41 0.16 16 35 H 0.07 0.86 7.57 -51.93 -0.39 0.47 16 36 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.39 6.88 7.96 -40.82 -0.32 6.56 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -33.13 362.19 -8.99 -42.12 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.83 Total: 5.28 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.20 Total: -8.47 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.35 Total: -39.62 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.76 Total: -20.40 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.13 -8.99 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601022596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.652 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds