Wall clock time and date at job start Tue Mar 31 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38259 * 119.99573 * 0.44536 * 4 3 2 6 6 C 1.38216 * 120.00111 * 359.80820 * 5 4 3 7 7 C 1.50702 * 120.00031 * 179.97438 * 6 5 4 8 8 O 1.42889 * 109.47313 * 269.98118 * 7 6 5 9 9 C 1.42900 * 114.00158 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.47073 * 330.00201 * 9 8 7 11 11 C 1.53007 * 109.46839 * 89.99936 * 9 8 7 12 12 C 1.50696 * 109.47596 * 210.00201 * 9 8 7 13 13 O 1.21278 * 120.00172 * 0.02562 * 12 9 8 14 14 N 1.34778 * 120.00212 * 179.97438 * 12 9 8 15 15 C 1.46500 * 119.99997 * 179.97438 * 14 12 9 16 16 H 1.08992 * 109.47267 * 325.00059 * 15 14 12 17 17 C 1.53004 * 109.46913 * 85.00436 * 15 14 12 18 18 C 1.50705 * 109.47140 * 205.00049 * 15 14 12 19 19 H 1.08004 * 119.99864 * 0.02562 * 18 15 14 20 20 C 1.37876 * 119.99992 * 179.97438 * 18 15 14 21 21 N 1.31512 * 119.99967 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 119.99718 * 179.97438 * 20 18 15 23 23 H 1.48494 * 109.47399 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46927 * 120.00872 * 22 20 18 25 25 H 1.48503 * 109.47323 * 240.00198 * 22 20 18 26 26 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 27 27 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 29 29 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 30 30 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.00183 * 180.27524 * 4 3 2 32 32 H 1.07993 * 119.99526 * 179.83297 * 5 4 3 33 33 H 1.09003 * 109.46422 * 29.98264 * 7 6 5 34 34 H 1.08998 * 109.46589 * 149.97838 * 7 6 5 35 35 H 1.08998 * 109.46789 * 180.02562 * 11 9 8 36 36 H 1.08999 * 109.47053 * 299.99964 * 11 9 8 37 37 H 1.08997 * 109.46823 * 60.00625 * 11 9 8 38 38 H 0.97001 * 119.99533 * 0.02562 * 14 12 9 39 39 H 1.08996 * 109.47116 * 60.00066 * 17 15 14 40 40 H 1.08999 * 109.46783 * 180.02562 * 17 15 14 41 41 H 1.09002 * 109.46705 * 299.99951 * 17 15 14 42 42 H 0.97000 * 119.99846 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.00154 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2718 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0058 7 6 4.3341 -2.5021 -0.0117 8 8 4.5718 -2.9088 -1.3608 9 6 5.2845 -4.1417 -1.4792 10 1 5.9462 -4.2627 -0.6215 11 6 4.2898 -5.3035 -1.5239 12 6 6.1009 -4.1304 -2.7458 13 8 6.0754 -3.1618 -3.4751 14 7 6.8602 -5.1964 -3.0676 15 6 7.6535 -5.1857 -4.2992 16 1 7.1120 -4.6450 -5.0754 17 6 8.9934 -4.4952 -4.0367 18 6 7.8984 -6.6022 -4.7514 19 1 7.5024 -7.4280 -4.1789 20 6 8.6272 -6.8441 -5.8966 21 7 9.1089 -5.8386 -6.5940 22 14 8.9313 -8.6000 -6.4566 23 1 8.2886 -9.5415 -5.5050 24 1 8.3541 -8.7946 -7.8109 25 1 10.3928 -8.8598 -6.4996 26 6 2.1981 -1.1970 -0.0058 27 1 -0.3633 -0.0050 1.0277 28 1 -0.3634 0.8925 -0.5094 29 1 -0.3633 -0.8875 -0.5181 30 1 1.6583 2.1326 0.0004 31 1 4.1205 2.1326 0.0089 32 1 5.3517 0.0000 0.0002 33 1 5.2867 -2.3739 0.5023 34 1 3.7452 -3.2639 0.4991 35 1 4.8334 -6.2439 -1.6137 36 1 3.6993 -5.3117 -0.6077 37 1 3.6282 -5.1825 -2.3816 38 1 6.8809 -5.9710 -2.4841 39 1 9.5349 -5.0360 -3.2606 40 1 9.5834 -4.4868 -4.9532 41 1 8.8162 -3.4707 -3.7096 42 1 9.6219 -6.0088 -7.3995 43 1 1.6581 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601022596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:03 Heat of formation + Delta-G solvation = -91.706467 kcal Electronic energy + Delta-G solvation = -22580.095922 eV Core-core repulsion = 19202.963271 eV Total energy + Delta-G solvation = -3377.132651 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.95909 -40.32427 -38.57056 -36.65795 -34.52116 -34.05060 -32.96405 -32.01598 -30.30277 -27.89202 -27.35863 -27.13318 -25.30658 -23.03314 -22.76405 -21.66397 -21.11445 -19.12131 -18.03494 -17.66108 -17.30440 -17.07239 -16.68832 -16.38533 -15.87016 -15.69818 -15.16834 -15.02545 -14.59016 -14.44147 -14.27969 -13.97268 -13.72011 -13.68851 -13.40113 -13.09074 -13.00875 -12.93332 -12.87398 -12.80250 -12.73351 -12.34288 -12.28150 -12.10419 -11.93057 -11.77153 -11.10513 -10.94351 -10.63260 -10.37583 -9.79359 -9.77685 -9.55176 -8.17583 -6.35468 0.30611 0.46230 1.45121 1.45885 1.58243 1.75458 2.11529 2.42680 2.77140 3.12875 3.23140 3.75994 3.85078 3.91116 3.99432 4.03551 4.13826 4.22666 4.33384 4.36896 4.53071 4.60843 4.71893 4.73450 4.80132 4.83640 4.85189 4.90286 4.97132 5.08027 5.14528 5.21838 5.29883 5.41848 5.52724 5.60047 5.63791 5.66409 5.66918 5.87580 6.08299 6.09095 6.16139 6.72521 6.95495 7.32100 7.54353 8.89255 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032569 B = 0.002747 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.502004 B =10189.821742 C =10514.821250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.123 4.123 4 C -0.128 4.128 5 C -0.124 4.124 6 C -0.104 4.104 7 C 0.096 3.904 8 O -0.383 6.383 9 C 0.078 3.922 10 H 0.117 0.883 11 C -0.162 4.162 12 C 0.494 3.506 13 O -0.593 6.593 14 N -0.698 5.698 15 C 0.270 3.730 16 H -0.006 1.006 17 C -0.134 4.134 18 C -0.543 4.543 19 H 0.078 0.922 20 C 0.011 3.989 21 N -0.920 5.920 22 Si 0.975 3.025 23 H -0.257 1.257 24 H -0.285 1.285 25 H -0.279 1.279 26 C -0.112 4.112 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.121 0.879 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.407 0.593 39 H 0.044 0.956 40 H 0.066 0.934 41 H 0.008 0.992 42 H 0.265 0.735 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.046 6.199 19.136 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.142 4.142 6 C -0.104 4.104 7 C 0.021 3.979 8 O -0.302 6.302 9 C 0.017 3.983 10 H 0.135 0.865 11 C -0.219 4.219 12 C 0.280 3.720 13 O -0.474 6.474 14 N -0.349 5.349 15 C 0.167 3.833 16 H 0.012 0.988 17 C -0.193 4.193 18 C -0.581 4.581 19 H 0.096 0.904 20 C -0.189 4.189 21 N -0.558 5.558 22 Si 0.800 3.200 23 H -0.180 1.180 24 H -0.212 1.212 25 H -0.204 1.204 26 C -0.130 4.130 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.139 0.861 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.067 0.933 38 H 0.243 0.757 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.027 0.973 42 H 0.074 0.926 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.020 7.019 18.303 24.101 hybrid contribution 0.730 -0.862 -0.511 1.240 sum -13.290 6.157 17.792 23.046 Atomic orbital electron populations 1.20827 0.89150 1.03513 1.03281 1.20298 0.97698 0.92873 0.99254 1.21407 0.94235 0.98534 0.99905 1.21421 0.94980 0.98277 0.99934 1.21282 1.00360 0.92701 0.99899 1.19789 0.94364 0.94389 1.01865 1.21615 0.99384 0.93770 0.83179 1.88113 1.75746 1.39085 1.27301 1.21995 0.94444 0.86574 0.95273 0.86542 1.22217 0.99295 0.96467 1.03966 1.21274 0.79936 0.82647 0.88116 1.90647 1.66764 1.35857 1.54131 1.46184 1.45313 1.17947 1.25479 1.18356 0.87583 0.95999 0.81381 0.98847 1.21905 0.99835 0.96096 1.01451 1.21568 1.34653 0.91680 1.10235 0.90434 1.25858 0.94917 1.01888 0.96209 1.70075 1.36067 1.32765 1.16913 0.85244 0.77869 0.78873 0.78018 1.18028 1.21156 1.20440 1.21172 0.93161 0.98809 0.99813 0.89805 0.90571 0.91242 0.83791 0.84160 0.86096 0.91405 0.89695 0.89307 0.88369 0.93275 0.75685 0.93651 0.91484 0.97262 0.92574 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 71.24 0.71 -0.74 16 2 C -0.10 -1.96 5.88 -19.86 -0.12 -2.08 16 3 C -0.12 -2.32 9.70 22.27 0.22 -2.10 16 4 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 5 C -0.12 -3.05 9.70 22.27 0.22 -2.83 16 6 C -0.10 -2.57 5.51 -19.87 -0.11 -2.68 16 7 C 0.10 2.23 5.87 71.24 0.42 2.65 16 8 O -0.38 -12.53 9.50 -129.95 -1.23 -13.77 16 9 C 0.08 2.29 3.14 29.85 0.09 2.38 16 10 H 0.12 2.56 7.79 -2.39 -0.02 2.55 16 11 C -0.16 -3.68 9.42 71.98 0.68 -3.00 16 12 C 0.49 20.92 7.20 87.66 0.63 21.55 16 13 O -0.59 -32.20 16.16 16.01 0.26 -31.94 16 14 N -0.70 -29.30 4.96 -446.10 -2.21 -31.52 16 15 C 0.27 14.32 2.56 44.25 0.11 14.43 16 16 H -0.01 -0.41 7.58 -2.39 -0.02 -0.42 16 17 C -0.13 -6.95 9.26 71.98 0.67 -6.29 16 18 C -0.54 -28.75 8.73 25.60 0.22 -28.53 16 19 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 20 C 0.01 0.60 5.30 84.65 0.45 1.05 16 21 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 22 Si 0.98 41.93 29.54 68.60 2.03 43.95 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 24 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 26 C -0.11 -2.45 9.36 22.27 0.21 -2.24 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 29 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 30 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 32 H 0.12 2.86 8.06 -2.91 -0.02 2.83 16 33 H 0.07 1.39 8.03 -2.39 -0.02 1.37 16 34 H 0.08 1.44 7.81 -2.39 -0.02 1.43 16 35 H 0.09 1.76 7.57 -2.39 -0.02 1.74 16 36 H 0.10 1.55 7.87 -2.39 -0.02 1.54 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.41 13.74 7.96 -92.71 -0.74 13.00 16 39 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -75.29 362.19 3.96 -71.34 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.25 Total: 26.04 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 4.62 Total: -10.89 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -1.97 Total: -84.74 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -0.98 Total: -45.70 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -75.29 3.96 -71.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601022596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.369 kcal (2) G-P(sol) polarization free energy of solvation -75.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds