Wall clock time and date at job start Tue Mar 31 2020 06:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34706 * 117.00345 * 2 1 4 4 O 1.21474 * 119.99718 * 359.97438 * 3 2 1 5 5 C 1.47739 * 120.00293 * 179.97438 * 3 2 1 6 6 C 1.39555 * 120.11423 * 353.76655 * 5 3 2 7 7 C 1.38619 * 119.76873 * 179.97438 * 6 5 3 8 8 N 1.39715 * 120.00185 * 180.02562 * 7 6 5 9 9 C 1.46498 * 120.00328 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47148 * 180.02562 * 9 8 7 11 11 H 1.09004 * 109.47305 * 55.00013 * 10 9 8 12 12 C 1.52994 * 109.46963 * 294.99860 * 10 9 8 13 13 C 1.53008 * 109.46963 * 175.00051 * 10 9 8 14 14 C 1.50696 * 109.46978 * 184.99810 * 13 10 9 15 15 H 1.08001 * 120.00102 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99907 * 179.97438 * 14 13 10 17 17 N 1.31509 * 119.99864 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99844 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47314 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47076 * 120.00394 * 18 16 14 21 21 H 1.48501 * 109.47278 * 240.00256 * 18 16 14 22 22 C 1.39033 * 119.99776 * 0.02562 * 7 6 5 23 23 C 1.38209 * 120.23003 * 359.97438 * 22 7 6 24 24 C 1.38016 * 120.23258 * 359.76175 * 23 22 7 25 25 C 1.50698 * 119.99897 * 180.27832 * 24 23 22 26 26 H 1.08998 * 109.47048 * 60.00175 * 1 2 3 27 27 H 1.09003 * 109.47308 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47507 * 300.00442 * 1 2 3 29 29 H 1.08001 * 120.11435 * 359.97438 * 6 5 3 30 30 H 0.97004 * 119.99915 * 0.02562 * 8 7 6 31 31 H 1.09007 * 109.46659 * 299.99946 * 9 8 7 32 32 H 1.08999 * 109.47258 * 59.99842 * 9 8 7 33 33 H 1.08994 * 109.47156 * 60.00389 * 12 10 9 34 34 H 1.08999 * 109.47217 * 180.02562 * 12 10 9 35 35 H 1.08998 * 109.47528 * 299.99858 * 12 10 9 36 36 H 1.09002 * 109.47055 * 305.00120 * 13 10 9 37 37 H 1.08991 * 109.46913 * 64.99661 * 13 10 9 38 38 H 0.96997 * 120.00277 * 179.97438 * 17 16 14 39 39 H 1.08006 * 119.88095 * 179.97438 * 22 7 6 40 40 H 1.08003 * 119.87882 * 180.02562 * 23 22 7 41 41 H 1.09001 * 109.47425 * 263.64167 * 25 24 23 42 42 H 1.08996 * 109.47229 * 23.63653 * 25 24 23 43 43 H 1.09000 * 109.46911 * 143.63755 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.3009 0.1158 0.1322 7 6 5.6848 0.1965 0.1313 8 7 6.4524 -0.9635 0.2622 9 6 7.9148 -0.8781 0.2618 10 6 8.5076 -2.2800 0.4173 11 1 8.1101 -2.9310 -0.3613 12 6 8.1353 -2.8415 1.7909 13 6 10.0308 -2.2064 0.2921 14 6 10.6051 -3.5993 0.3224 15 1 9.9493 -4.4518 0.4206 16 6 11.9677 -3.7854 0.2236 17 7 12.7661 -2.7474 0.1035 18 14 12.6797 -5.5120 0.2618 19 1 11.5787 -6.4984 0.4037 20 1 13.4166 -5.7716 -1.0010 21 1 13.6097 -5.6386 1.4126 22 6 6.3089 1.4320 0.0001 23 6 5.5542 2.5825 -0.1303 24 6 4.1758 2.5125 -0.1360 25 6 3.3581 3.7696 -0.2847 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.8141 -0.8429 0.2344 30 1 6.0169 -1.8255 0.3534 31 1 8.2531 -0.4432 -0.6788 32 1 8.2424 -0.2507 1.0907 33 1 7.0503 -2.8940 1.8801 34 1 8.5580 -3.8401 1.9020 35 1 8.5329 -2.1906 2.5696 36 1 10.2951 -1.7247 -0.6493 37 1 10.4360 -1.6282 1.1224 38 1 13.7248 -2.8783 0.0343 39 1 7.3872 1.4928 0.0000 40 1 6.0449 3.5392 -0.2322 41 1 3.0554 4.1248 0.7003 42 1 3.9558 4.5354 -0.7791 43 1 2.4719 3.5578 -0.8829 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602587413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:48 Heat of formation + Delta-G solvation = -77.445792 kcal Electronic energy + Delta-G solvation = -22382.861120 eV Core-core repulsion = 19006.346858 eV Total energy + Delta-G solvation = -3376.514262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.79068 -39.24507 -37.08133 -36.40993 -34.29792 -32.35396 -31.58381 -30.65577 -28.12708 -27.17352 -26.58742 -25.07049 -24.01573 -22.68735 -21.94766 -20.34684 -19.37128 -17.92474 -17.29057 -16.58847 -16.52025 -15.87971 -15.67355 -15.09451 -14.67254 -14.51247 -14.02741 -13.99888 -13.81379 -13.51821 -13.13669 -12.89272 -12.70515 -12.35532 -12.34439 -12.16545 -11.86035 -11.69890 -11.51822 -11.37285 -10.99053 -10.95939 -10.92094 -10.44192 -10.40208 -10.19501 -10.02851 -9.68051 -9.35624 -9.08596 -9.06593 -8.41535 -7.24491 -6.05898 -4.07775 0.69537 1.52086 2.49853 2.54607 3.27088 3.35176 3.38189 3.61517 3.80976 4.41406 4.57703 4.80735 4.86128 4.93267 4.99028 5.16240 5.24354 5.30287 5.34631 5.44750 5.51718 5.62104 5.70005 5.75067 5.83103 5.88001 5.97900 6.12617 6.15477 6.23660 6.31543 6.35617 6.37509 6.55417 6.71624 6.82293 6.95099 6.99564 7.45106 7.57389 7.61190 7.70498 7.88077 7.92686 8.34948 8.98141 9.56348 11.05556 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029267 B = 0.002643 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.484073 B =10593.279035 C =11387.706843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.509 3.491 4 O -0.504 6.504 5 C -0.087 4.087 6 C -0.145 4.145 7 C 0.208 3.792 8 N -0.739 5.739 9 C 0.125 3.875 10 C -0.096 4.096 11 H 0.063 0.937 12 C -0.132 4.132 13 C 0.030 3.970 14 C -0.516 4.516 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.157 4.157 23 C -0.084 4.084 24 C -0.088 4.088 25 C -0.111 4.111 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.133 0.867 30 H 0.399 0.601 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.030 0.970 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.017 0.983 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.548 8.485 -0.008 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.356 3.644 4 O -0.393 6.393 5 C -0.088 4.088 6 C -0.168 4.168 7 C 0.103 3.897 8 N -0.367 5.367 9 C 0.001 3.999 10 C -0.115 4.115 11 H 0.081 0.919 12 C -0.190 4.190 13 C -0.008 4.008 14 C -0.554 4.554 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.180 4.180 23 C -0.102 4.102 24 C -0.090 4.090 25 C -0.168 4.168 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.150 0.850 30 H 0.235 0.765 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.363 8.825 -0.023 22.193 hybrid contribution 0.263 -1.293 0.073 1.321 sum -20.100 7.532 0.050 21.464 Atomic orbital electron populations 1.23256 0.76251 1.03686 1.02493 1.86577 1.23319 1.32935 1.84326 1.21359 0.89313 0.81202 0.72576 1.90776 1.67064 1.35512 1.45978 1.18551 0.88032 0.94210 1.08047 1.20780 0.91815 0.98142 1.06084 1.17779 0.90128 0.87807 0.94009 1.45019 1.05994 1.05904 1.79756 1.21671 0.77866 0.99741 1.00608 1.21440 1.00133 0.92651 0.97248 0.91907 1.21723 0.98111 1.02166 0.96967 1.19087 0.86853 0.97496 0.97348 1.21220 0.91744 0.92547 1.49916 0.92497 1.25015 0.97356 0.96742 0.95363 1.69962 1.03734 1.29344 1.50372 0.86560 0.79155 0.84828 0.77609 1.19767 1.21035 1.21034 1.21012 1.00594 0.91035 1.05382 1.20740 0.92255 0.98203 0.99028 1.19669 0.93840 0.93735 1.01794 1.20937 0.99702 0.93534 1.02590 0.91902 0.88080 0.91906 0.84951 0.76543 0.92420 0.92486 0.95060 0.91736 0.93456 0.96427 0.96287 0.93018 0.85133 0.85305 0.91433 0.92532 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.95 9.83 -40.51 -0.40 -4.34 16 3 C 0.51 6.46 7.82 34.61 0.27 6.74 16 4 O -0.50 -6.94 13.13 -19.25 -0.25 -7.20 16 5 C -0.09 -1.11 5.87 -105.01 -0.62 -1.73 16 6 C -0.14 -1.81 9.46 -38.95 -0.37 -2.18 16 7 C 0.21 2.75 6.65 -83.83 -0.56 2.19 16 8 N -0.74 -10.00 5.46 -58.67 -0.32 -10.32 16 9 C 0.12 1.94 4.30 -4.04 -0.02 1.93 16 10 C -0.10 -1.77 2.37 -90.62 -0.22 -1.99 16 11 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 12 C -0.13 -2.29 8.88 37.15 0.33 -1.96 16 13 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 14 C -0.52 -13.81 8.41 -34.44 -0.29 -14.10 16 15 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 17 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.16 -1.99 9.31 -39.30 -0.37 -2.36 16 23 C -0.08 -0.96 9.65 -39.67 -0.38 -1.35 16 24 C -0.09 -1.07 5.92 -104.19 -0.62 -1.69 16 25 C -0.11 -1.21 8.72 36.00 0.31 -0.90 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.13 1.49 7.63 -52.49 -0.40 1.09 16 30 H 0.40 4.98 7.66 -40.82 -0.31 4.67 16 31 H 0.06 0.92 7.94 -51.93 -0.41 0.51 16 32 H 0.06 0.90 7.95 -51.93 -0.41 0.48 16 33 H 0.03 0.45 7.18 -51.93 -0.37 0.08 16 34 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.13 1.60 6.71 -52.48 -0.35 1.25 16 40 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.51 8.04 -51.93 -0.42 0.09 16 43 H 0.08 1.01 5.86 -51.93 -0.30 0.70 16 LS Contribution 354.85 15.07 5.35 5.35 Total: -1.00 -29.94 354.85 -8.23 -38.17 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.66 Total: 1.62 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -1.67 Total: -13.98 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.42 Total: -35.69 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.65 Total: -11.54 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.94 -8.23 -38.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602587413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.277 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds