Wall clock time and date at job start Tue Mar 31 2020 06:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34706 * 117.00345 * 2 1 4 4 O 1.21474 * 119.99718 * 359.97438 * 3 2 1 5 5 C 1.47739 * 120.00293 * 179.97438 * 3 2 1 6 6 C 1.39555 * 120.11423 * 353.76655 * 5 3 2 7 7 C 1.38619 * 119.76873 * 179.97438 * 6 5 3 8 8 N 1.39715 * 120.00185 * 180.02562 * 7 6 5 9 9 C 1.46498 * 120.00328 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47148 * 180.02562 * 9 8 7 11 11 H 1.09004 * 109.47305 * 55.00013 * 10 9 8 12 12 C 1.52994 * 109.46963 * 294.99860 * 10 9 8 13 13 C 1.53008 * 109.46963 * 175.00051 * 10 9 8 14 14 C 1.50696 * 109.46978 * 184.99810 * 13 10 9 15 15 H 1.08001 * 120.00102 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99907 * 179.97438 * 14 13 10 17 17 N 1.31509 * 119.99864 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99844 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47314 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47076 * 120.00394 * 18 16 14 21 21 H 1.48501 * 109.47278 * 240.00256 * 18 16 14 22 22 C 1.39033 * 119.99776 * 0.02562 * 7 6 5 23 23 C 1.38209 * 120.23003 * 359.97438 * 22 7 6 24 24 C 1.38016 * 120.23258 * 359.76175 * 23 22 7 25 25 C 1.50698 * 119.99897 * 180.27832 * 24 23 22 26 26 H 1.08998 * 109.47048 * 60.00175 * 1 2 3 27 27 H 1.09003 * 109.47308 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47507 * 300.00442 * 1 2 3 29 29 H 1.08001 * 120.11435 * 359.97438 * 6 5 3 30 30 H 0.97004 * 119.99915 * 0.02562 * 8 7 6 31 31 H 1.09007 * 109.46659 * 299.99946 * 9 8 7 32 32 H 1.08999 * 109.47258 * 59.99842 * 9 8 7 33 33 H 1.08994 * 109.47156 * 60.00389 * 12 10 9 34 34 H 1.08999 * 109.47217 * 180.02562 * 12 10 9 35 35 H 1.08998 * 109.47528 * 299.99858 * 12 10 9 36 36 H 1.09002 * 109.47055 * 305.00120 * 13 10 9 37 37 H 1.08991 * 109.46913 * 64.99661 * 13 10 9 38 38 H 0.96997 * 120.00277 * 179.97438 * 17 16 14 39 39 H 1.08006 * 119.88095 * 179.97438 * 22 7 6 40 40 H 1.08003 * 119.87882 * 180.02562 * 23 22 7 41 41 H 1.09001 * 109.47425 * 263.64167 * 25 24 23 42 42 H 1.08996 * 109.47229 * 23.63653 * 25 24 23 43 43 H 1.09000 * 109.46911 * 143.63755 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.3009 0.1158 0.1322 7 6 5.6848 0.1965 0.1313 8 7 6.4524 -0.9635 0.2622 9 6 7.9148 -0.8781 0.2618 10 6 8.5076 -2.2800 0.4173 11 1 8.1101 -2.9310 -0.3613 12 6 8.1353 -2.8415 1.7909 13 6 10.0308 -2.2064 0.2921 14 6 10.6051 -3.5993 0.3224 15 1 9.9493 -4.4518 0.4206 16 6 11.9677 -3.7854 0.2236 17 7 12.7661 -2.7474 0.1035 18 14 12.6797 -5.5120 0.2618 19 1 11.5787 -6.4984 0.4037 20 1 13.4166 -5.7716 -1.0010 21 1 13.6097 -5.6386 1.4126 22 6 6.3089 1.4320 0.0001 23 6 5.5542 2.5825 -0.1303 24 6 4.1758 2.5125 -0.1360 25 6 3.3581 3.7696 -0.2847 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.8141 -0.8429 0.2344 30 1 6.0169 -1.8255 0.3534 31 1 8.2531 -0.4432 -0.6788 32 1 8.2424 -0.2507 1.0907 33 1 7.0503 -2.8940 1.8801 34 1 8.5580 -3.8401 1.9020 35 1 8.5329 -2.1906 2.5696 36 1 10.2951 -1.7247 -0.6493 37 1 10.4360 -1.6282 1.1224 38 1 13.7248 -2.8783 0.0343 39 1 7.3872 1.4928 0.0000 40 1 6.0449 3.5392 -0.2322 41 1 3.0554 4.1248 0.7003 42 1 3.9558 4.5354 -0.7791 43 1 2.4719 3.5578 -0.8829 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602587413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:48 Heat of formation + Delta-G solvation = -92.905715 kcal Electronic energy + Delta-G solvation = -22383.531512 eV Core-core repulsion = 19006.346858 eV Total energy + Delta-G solvation = -3377.184655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.71134 -40.22078 -38.25938 -37.46647 -35.73176 -34.14449 -32.54097 -31.78723 -29.13575 -28.67150 -27.73841 -26.33111 -25.08579 -24.31830 -22.85839 -21.34069 -20.87713 -18.90141 -18.52326 -18.23088 -17.41348 -16.94190 -16.75206 -16.48985 -16.06076 -15.92827 -15.11398 -14.94242 -14.80371 -14.42857 -14.33929 -14.27787 -14.04610 -13.81291 -13.35620 -13.13725 -13.06010 -12.94308 -12.78762 -12.67737 -12.56236 -12.32621 -12.22553 -11.96321 -11.77971 -11.64292 -11.19150 -11.08784 -11.00480 -10.79363 -10.53362 -10.01365 -8.27757 -8.17348 -6.25754 -0.26622 0.56788 1.40537 1.42019 1.53651 1.54879 1.72506 2.40590 2.53466 2.84870 3.17149 3.69227 3.93524 4.06597 4.08559 4.20395 4.26642 4.31201 4.35142 4.35863 4.45338 4.53178 4.71356 4.78087 4.81835 4.85708 4.88686 4.95912 4.98273 5.08171 5.22885 5.25111 5.32979 5.34591 5.43799 5.47979 5.53833 5.63108 5.78213 5.82142 5.88299 6.26074 6.38515 6.69781 6.85919 6.91060 7.42671 8.94793 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029267 B = 0.002643 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.484073 B =10593.279035 C =11387.706843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.509 3.491 4 O -0.520 6.520 5 C -0.101 4.101 6 C -0.141 4.141 7 C 0.196 3.804 8 N -0.736 5.736 9 C 0.141 3.859 10 C -0.085 4.085 11 H 0.063 0.937 12 C -0.126 4.126 13 C 0.033 3.967 14 C -0.527 4.527 15 H 0.062 0.938 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.958 3.042 19 H -0.262 1.262 20 H -0.282 1.282 21 H -0.281 1.281 22 C -0.166 4.166 23 C -0.081 4.081 24 C -0.093 4.093 25 C -0.107 4.107 26 H 0.064 0.936 27 H 0.130 0.870 28 H 0.064 0.936 29 H 0.143 0.857 30 H 0.406 0.594 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.041 0.959 36 H -0.008 1.008 37 H -0.005 1.005 38 H 0.262 0.738 39 H 0.131 0.869 40 H 0.153 0.847 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.939 7.916 0.132 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.356 3.644 4 O -0.411 6.411 5 C -0.103 4.103 6 C -0.164 4.164 7 C 0.091 3.909 8 N -0.366 5.366 9 C 0.016 3.984 10 C -0.104 4.104 11 H 0.081 0.919 12 C -0.183 4.183 13 C -0.004 4.004 14 C -0.565 4.565 15 H 0.080 0.920 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.783 3.217 19 H -0.186 1.186 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.189 4.189 23 C -0.099 4.099 24 C -0.096 4.096 25 C -0.163 4.163 26 H 0.083 0.917 27 H 0.149 0.851 28 H 0.083 0.917 29 H 0.161 0.839 30 H 0.242 0.758 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.011 0.989 37 H 0.014 0.986 38 H 0.070 0.930 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.792 8.246 0.118 23.300 hybrid contribution 0.612 -1.065 0.016 1.228 sum -21.181 7.181 0.135 22.365 Atomic orbital electron populations 1.23568 0.74346 1.05744 1.02695 1.86560 1.25221 1.32052 1.83879 1.21373 0.89335 0.81458 0.72265 1.90767 1.67400 1.36081 1.46890 1.18750 0.88424 0.94651 1.08444 1.20849 0.91480 0.98609 1.05486 1.17868 0.90394 0.87736 0.94858 1.44751 1.04813 1.06487 1.80534 1.21292 0.79212 0.97556 1.00317 1.21199 0.96315 0.94662 0.98210 0.91861 1.21640 1.00170 1.00751 0.95736 1.18970 0.90786 0.95734 0.94952 1.21653 0.92121 0.93848 1.48918 0.91969 1.25904 0.98024 1.00741 0.95202 1.70088 1.04028 1.31628 1.51734 0.85500 0.78497 0.80131 0.77545 1.18551 1.20753 1.20723 1.21176 1.00863 0.91398 1.05470 1.20987 0.92000 0.98910 0.98036 1.19948 0.94340 0.94118 1.01189 1.20904 0.99369 0.93505 1.02554 0.91717 0.85147 0.91736 0.83883 0.75819 0.93017 0.92600 0.91720 0.93464 0.93955 0.98946 0.98650 0.92961 0.85063 0.82924 0.91456 0.90527 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.50 9.83 -56.16 -0.55 -8.06 16 3 C 0.51 12.42 7.82 70.33 0.55 12.97 16 4 O -0.52 -13.96 13.13 19.92 0.26 -13.70 16 5 C -0.10 -2.47 5.87 -20.11 -0.12 -2.59 16 6 C -0.14 -3.33 9.46 22.68 0.21 -3.11 16 7 C 0.20 4.90 6.65 38.17 0.25 5.15 16 8 N -0.74 -18.84 5.46 -339.52 -1.85 -20.70 16 9 C 0.14 4.30 4.30 86.38 0.37 4.67 16 10 C -0.08 -3.11 2.37 -10.79 -0.03 -3.14 16 11 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 12 C -0.13 -4.19 8.88 71.98 0.64 -3.55 16 13 C 0.03 1.63 4.45 29.85 0.13 1.76 16 14 C -0.53 -28.42 8.41 25.60 0.22 -28.21 16 15 H 0.06 3.22 7.06 -2.91 -0.02 3.20 16 16 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 17 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 18 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 19 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 C -0.17 -4.00 9.31 22.45 0.21 -3.79 16 23 C -0.08 -1.73 9.65 22.21 0.21 -1.51 16 24 C -0.09 -2.15 5.92 -19.58 -0.12 -2.27 16 25 C -0.11 -2.18 8.72 71.24 0.62 -1.55 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.14 2.97 7.63 -2.91 -0.02 2.95 16 30 H 0.41 9.29 7.66 -92.71 -0.71 8.58 16 31 H 0.05 1.64 7.94 -2.38 -0.02 1.62 16 32 H 0.06 1.73 7.95 -2.39 -0.02 1.71 16 33 H 0.06 1.72 7.18 -2.39 -0.02 1.70 16 34 H 0.05 1.73 6.95 -2.39 -0.02 1.71 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 36 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.13 3.10 6.71 -2.91 -0.02 3.08 16 40 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.08 1.21 8.04 -2.39 -0.02 1.20 16 43 H 0.07 1.67 5.86 -2.39 -0.01 1.65 16 Total: -1.00 -64.31 354.85 5.28 -59.03 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.29 Total: 16.54 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 4.82 Total: -23.18 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -1.57 Total: -75.94 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.29 Total: -21.76 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -64.31 5.28 -59.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602587413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.877 kcal (2) G-P(sol) polarization free energy of solvation -64.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds