Wall clock time and date at job start Tue Mar 31 2020 07:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 113.25489 * 2 1 4 4 C 1.53513 * 114.16880 * 132.94250 * 2 1 3 5 5 N 1.47490 * 87.92911 * 87.81770 * 4 2 1 6 6 C 1.46890 * 110.99881 * 138.70112 * 5 4 2 7 7 C 1.50698 * 109.47146 * 169.99777 * 6 5 4 8 8 C 1.38289 * 119.97869 * 270.23400 * 7 6 5 9 9 C 1.38237 * 120.11494 * 180.27323 * 8 7 6 10 10 C 1.38167 * 120.05858 * 359.74537 * 9 8 7 11 11 C 1.38709 * 119.93745 * 0.02562 * 10 9 8 12 12 O 1.35906 * 120.05198 * 179.97438 * 11 10 9 13 13 C 1.42899 * 117.00229 * 0.02562 * 12 11 10 14 14 C 1.52994 * 109.47206 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47149 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99936 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00355 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99590 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00355 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47222 * 60.00229 * 19 17 15 21 21 H 1.48500 * 109.47450 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46804 * 300.00247 * 19 17 15 23 23 C 1.38125 * 119.96886 * 89.99848 * 7 6 5 24 24 C 1.47486 * 87.83218 * 27.00948 * 5 4 2 25 25 H 1.08993 * 109.47387 * 287.05453 * 1 2 3 26 26 H 1.09008 * 109.46849 * 47.05104 * 1 2 3 27 27 H 1.08999 * 109.47221 * 167.04584 * 1 2 3 28 28 H 0.96706 * 114.00278 * 312.94613 * 3 2 1 29 29 H 1.09001 * 113.47538 * 333.05573 * 4 2 1 30 30 H 1.08996 * 113.52910 * 202.58963 * 4 2 1 31 31 H 1.09004 * 109.47265 * 50.00160 * 6 5 4 32 32 H 1.08998 * 109.47715 * 290.00188 * 6 5 4 33 33 H 1.08001 * 119.93832 * 0.02562 * 8 7 6 34 34 H 1.08006 * 119.97237 * 179.77245 * 9 8 7 35 35 H 1.07993 * 120.03379 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.46748 * 299.99921 * 13 12 11 37 37 H 1.08999 * 109.47366 * 59.99267 * 13 12 11 38 38 H 1.09001 * 109.47354 * 299.99735 * 14 13 12 39 39 H 1.09001 * 109.47032 * 60.00145 * 14 13 12 40 40 H 0.97000 * 119.99198 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.03152 * 0.02562 * 23 7 6 42 42 H 1.08994 * 113.47477 * 87.76280 * 24 5 4 43 43 H 1.09005 * 113.47338 * 218.22138 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0942 1.3129 0.0000 4 6 2.1585 -0.9542 1.0253 5 7 2.0855 -2.0149 0.0031 6 6 3.3048 -2.8340 0.0064 7 6 3.0992 -4.0445 -0.8672 8 6 2.5873 -5.2091 -0.3250 9 6 2.4028 -6.3230 -1.1227 10 6 2.7247 -6.2736 -2.4654 11 6 3.2339 -5.1052 -3.0127 12 8 3.5518 -5.0542 -4.3331 13 6 3.3353 -6.2412 -5.0988 14 6 3.7475 -5.9934 -6.5512 15 6 3.5199 -7.2454 -7.3586 16 1 3.1207 -8.1293 -6.8833 17 6 3.8201 -7.2621 -8.7041 18 7 4.3058 -6.1856 -9.2829 19 14 3.5373 -8.8137 -9.7050 20 1 2.0992 -9.1805 -9.6539 21 1 3.9374 -8.5733 -11.1147 22 1 4.3509 -9.9211 -9.1420 23 6 3.4176 -3.9884 -2.2101 24 6 2.1629 -0.9561 -1.0207 25 1 -0.3634 0.3014 0.9824 26 1 -0.3633 0.7003 -0.7523 27 1 -0.3633 -1.0015 -0.2304 28 1 1.6965 1.9120 -0.6467 29 1 1.5232 -1.1410 1.8910 30 1 3.1785 -0.6862 1.3009 31 1 3.5247 -3.1542 1.0249 32 1 4.1386 -2.2462 -0.3775 33 1 2.3350 -5.2497 0.7243 34 1 2.0063 -7.2325 -0.6960 35 1 2.5808 -7.1442 -3.0881 36 1 3.9319 -7.0542 -4.6851 37 1 2.2797 -6.5100 -5.0618 38 1 3.1506 -5.1805 -6.9647 39 1 4.8032 -5.7244 -6.5884 40 1 4.5174 -6.1976 -10.2295 41 1 3.8142 -3.0776 -2.6339 42 1 3.1840 -0.6880 -1.2918 43 1 1.5312 -1.1445 -1.8889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602688622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:49 Heat of formation + Delta-G solvation = -35.241957 kcal Electronic energy + Delta-G solvation = -22347.010300 eV Core-core repulsion = 18972.326133 eV Total energy + Delta-G solvation = -3374.684167 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.91119 -39.64419 -37.34358 -36.03844 -33.39954 -32.49141 -30.84180 -30.02792 -29.14372 -27.09869 -26.34170 -25.04994 -23.64507 -22.27778 -21.59389 -20.16633 -19.68814 -17.77795 -17.25536 -16.26982 -16.09658 -15.73037 -15.60166 -15.45417 -15.29256 -14.79815 -14.48174 -14.09333 -13.65614 -13.54438 -13.13398 -12.98270 -12.61484 -12.44419 -12.40992 -12.31366 -12.04206 -11.66204 -11.38028 -11.28678 -11.23402 -10.90088 -10.83090 -10.71419 -10.44330 -10.11184 -9.85214 -9.66446 -9.32527 -9.29500 -8.67472 -8.45328 -7.82165 -6.11030 -4.15794 1.45602 1.71366 3.28146 3.32463 3.34226 3.51469 3.79171 3.84677 4.06588 4.09116 4.40022 4.46975 4.61840 4.78753 4.93134 5.05683 5.12201 5.24231 5.25289 5.28755 5.31450 5.39736 5.46868 5.51478 5.55482 5.64566 5.67952 5.74627 5.81932 5.99085 6.03407 6.07924 6.19296 6.56886 6.57324 6.64299 6.73896 6.76187 7.00334 7.27718 7.49923 7.63253 7.80937 8.06569 8.23196 8.89564 9.48500 11.00561 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023306 B = 0.002662 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.099119 B =10516.777267 C =11293.961475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.095 3.905 3 O -0.554 6.554 4 C 0.011 3.989 5 N -0.456 5.456 6 C 0.063 3.937 7 C -0.041 4.041 8 C -0.152 4.152 9 C -0.081 4.081 10 C -0.211 4.211 11 C 0.145 3.855 12 O -0.317 6.317 13 C 0.065 3.935 14 C 0.026 3.974 15 C -0.527 4.527 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.153 4.153 24 C -0.026 4.026 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.380 0.620 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.264 0.736 41 H 0.122 0.878 42 H 0.079 0.921 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 10.457 21.361 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.054 3.946 3 O -0.359 6.359 4 C -0.118 4.118 5 N -0.179 5.179 6 C -0.064 4.064 7 C -0.042 4.042 8 C -0.171 4.171 9 C -0.099 4.099 10 C -0.230 4.230 11 C 0.098 3.902 12 O -0.230 6.230 13 C -0.009 4.009 14 C -0.011 4.011 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.172 4.172 24 C -0.155 4.155 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.228 0.772 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.097 0.903 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.637 9.924 21.528 24.367 hybrid contribution 0.236 -0.438 -1.126 1.231 sum -5.401 9.487 20.402 23.139 Atomic orbital electron populations 1.22021 0.92550 1.03879 1.02514 1.22703 0.93344 0.81836 0.96759 1.86533 1.63902 1.22374 1.63105 1.24023 1.01351 0.89845 0.96591 1.68925 1.33869 1.10984 1.04147 1.21598 0.91656 0.93551 0.99643 1.19234 0.97904 0.94308 0.92749 1.20730 1.03618 0.93028 0.99735 1.20875 0.97895 0.98057 0.93062 1.21382 1.06413 0.98467 0.96760 1.19140 0.92906 0.93548 0.84592 1.86166 1.79846 1.40442 1.16554 1.23322 0.99600 0.84036 0.93895 1.19115 0.98009 0.98096 0.85906 1.20938 1.44188 0.97514 0.93906 0.92416 1.24990 0.94882 0.96534 0.97767 1.69971 1.43202 1.27974 1.11653 0.86542 0.78739 0.83041 0.79019 1.20076 1.21100 1.20082 1.20229 1.06754 0.97693 0.92554 1.24724 1.01766 0.91517 0.97495 0.91587 0.91939 0.89974 0.77213 0.88973 0.90483 0.89775 0.92462 0.86512 0.86181 0.85287 0.93154 0.93153 0.95429 0.95433 0.92640 0.85961 0.90306 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.46 37.16 0.35 -0.73 16 2 C 0.09 0.80 2.09 -90.09 -0.19 0.61 16 3 O -0.55 -4.67 13.55 -35.23 -0.48 -5.15 16 4 C 0.01 0.09 7.11 -7.53 -0.05 0.04 16 5 N -0.46 -4.71 6.13 -246.06 -1.51 -6.21 16 6 C 0.06 0.67 4.94 -4.98 -0.02 0.64 16 7 C -0.04 -0.55 5.46 -104.65 -0.57 -1.12 16 8 C -0.15 -1.94 9.70 -39.56 -0.38 -2.33 16 9 C -0.08 -1.09 10.04 -39.61 -0.40 -1.49 16 10 C -0.21 -3.39 9.04 -39.43 -0.36 -3.75 16 11 C 0.15 2.59 6.69 -39.22 -0.26 2.33 16 12 O -0.32 -6.66 10.14 -19.44 -0.20 -6.85 16 13 C 0.07 1.43 4.68 37.15 0.17 1.60 16 14 C 0.03 0.68 5.34 -27.88 -0.15 0.54 16 15 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 16 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 19 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.15 -2.38 9.64 -39.43 -0.38 -2.76 16 24 C -0.03 -0.25 7.09 -7.54 -0.05 -0.31 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 28 H 0.38 1.76 9.03 45.56 0.41 2.17 16 29 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 30 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 31 H 0.08 0.76 8.02 -51.93 -0.42 0.35 16 32 H 0.06 0.58 7.24 -51.93 -0.38 0.21 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.13 2.03 6.30 -52.49 -0.33 1.70 16 36 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 37 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.08 0.79 7.42 -51.93 -0.39 0.41 16 43 H 0.09 0.94 8.12 -51.93 -0.42 0.52 16 LS Contribution 358.03 15.07 5.40 5.40 Total: -1.00 -31.59 358.03 -9.84 -41.43 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.06 Total: 1.11 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.71 Total: -20.19 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: -0.77 Total: -32.05 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.67 Total: -12.00 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.59 -9.84 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602688622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.188 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds