Wall clock time and date at job start Tue Mar 31 2020 07:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 113.25489 * 2 1 4 4 C 1.53513 * 114.16880 * 132.94250 * 2 1 3 5 5 N 1.47490 * 87.92911 * 87.81770 * 4 2 1 6 6 C 1.46890 * 110.99881 * 138.70112 * 5 4 2 7 7 C 1.50698 * 109.47146 * 169.99777 * 6 5 4 8 8 C 1.38289 * 119.97869 * 270.23400 * 7 6 5 9 9 C 1.38237 * 120.11494 * 180.27323 * 8 7 6 10 10 C 1.38167 * 120.05858 * 359.74537 * 9 8 7 11 11 C 1.38709 * 119.93745 * 0.02562 * 10 9 8 12 12 O 1.35906 * 120.05198 * 179.97438 * 11 10 9 13 13 C 1.42899 * 117.00229 * 0.02562 * 12 11 10 14 14 C 1.52994 * 109.47206 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47149 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99936 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00355 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99590 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00355 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47222 * 60.00229 * 19 17 15 21 21 H 1.48500 * 109.47450 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46804 * 300.00247 * 19 17 15 23 23 C 1.38125 * 119.96886 * 89.99848 * 7 6 5 24 24 C 1.47486 * 87.83218 * 27.00948 * 5 4 2 25 25 H 1.08993 * 109.47387 * 287.05453 * 1 2 3 26 26 H 1.09008 * 109.46849 * 47.05104 * 1 2 3 27 27 H 1.08999 * 109.47221 * 167.04584 * 1 2 3 28 28 H 0.96706 * 114.00278 * 312.94613 * 3 2 1 29 29 H 1.09001 * 113.47538 * 333.05573 * 4 2 1 30 30 H 1.08996 * 113.52910 * 202.58963 * 4 2 1 31 31 H 1.09004 * 109.47265 * 50.00160 * 6 5 4 32 32 H 1.08998 * 109.47715 * 290.00188 * 6 5 4 33 33 H 1.08001 * 119.93832 * 0.02562 * 8 7 6 34 34 H 1.08006 * 119.97237 * 179.77245 * 9 8 7 35 35 H 1.07993 * 120.03379 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.46748 * 299.99921 * 13 12 11 37 37 H 1.08999 * 109.47366 * 59.99267 * 13 12 11 38 38 H 1.09001 * 109.47354 * 299.99735 * 14 13 12 39 39 H 1.09001 * 109.47032 * 60.00145 * 14 13 12 40 40 H 0.97000 * 119.99198 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.03152 * 0.02562 * 23 7 6 42 42 H 1.08994 * 113.47477 * 87.76280 * 24 5 4 43 43 H 1.09005 * 113.47338 * 218.22138 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0942 1.3129 0.0000 4 6 2.1585 -0.9542 1.0253 5 7 2.0855 -2.0149 0.0031 6 6 3.3048 -2.8340 0.0064 7 6 3.0992 -4.0445 -0.8672 8 6 2.5873 -5.2091 -0.3250 9 6 2.4028 -6.3230 -1.1227 10 6 2.7247 -6.2736 -2.4654 11 6 3.2339 -5.1052 -3.0127 12 8 3.5518 -5.0542 -4.3331 13 6 3.3353 -6.2412 -5.0988 14 6 3.7475 -5.9934 -6.5512 15 6 3.5199 -7.2454 -7.3586 16 1 3.1207 -8.1293 -6.8833 17 6 3.8201 -7.2621 -8.7041 18 7 4.3058 -6.1856 -9.2829 19 14 3.5373 -8.8137 -9.7050 20 1 2.0992 -9.1805 -9.6539 21 1 3.9374 -8.5733 -11.1147 22 1 4.3509 -9.9211 -9.1420 23 6 3.4176 -3.9884 -2.2101 24 6 2.1629 -0.9561 -1.0207 25 1 -0.3634 0.3014 0.9824 26 1 -0.3633 0.7003 -0.7523 27 1 -0.3633 -1.0015 -0.2304 28 1 1.6965 1.9120 -0.6467 29 1 1.5232 -1.1410 1.8910 30 1 3.1785 -0.6862 1.3009 31 1 3.5247 -3.1542 1.0249 32 1 4.1386 -2.2462 -0.3775 33 1 2.3350 -5.2497 0.7243 34 1 2.0063 -7.2325 -0.6960 35 1 2.5808 -7.1442 -3.0881 36 1 3.9319 -7.0542 -4.6851 37 1 2.2797 -6.5100 -5.0618 38 1 3.1506 -5.1805 -6.9647 39 1 4.8032 -5.7244 -6.5884 40 1 4.5174 -6.1976 -10.2295 41 1 3.8142 -3.0776 -2.6339 42 1 3.1840 -0.6880 -1.2918 43 1 1.5312 -1.1445 -1.8889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602688622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:49 Heat of formation + Delta-G solvation = -57.993802 kcal Electronic energy + Delta-G solvation = -22347.996894 eV Core-core repulsion = 18972.326133 eV Total energy + Delta-G solvation = -3375.670761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.68777 -40.91447 -38.64013 -36.77966 -35.49096 -33.44110 -32.59979 -31.00108 -30.46664 -27.96101 -27.11394 -26.91471 -24.63997 -23.44969 -23.24001 -21.55539 -20.37102 -19.17922 -18.26783 -17.94022 -17.07526 -16.96205 -16.89609 -16.66568 -16.49106 -16.24617 -15.62328 -15.05648 -14.55845 -14.44381 -14.34194 -14.26586 -14.10738 -14.02485 -13.36365 -13.13855 -13.04038 -12.95915 -12.71071 -12.60529 -12.56717 -12.44651 -12.14618 -11.87999 -11.62916 -11.59660 -11.49555 -11.39379 -10.78928 -10.63145 -10.11506 -9.76460 -9.10886 -8.28220 -6.42338 0.32678 0.52880 1.39855 1.44010 1.52032 2.25247 2.49032 2.66916 3.04926 3.06083 3.18249 3.41696 3.71797 3.83729 3.90060 4.01979 4.15015 4.19893 4.24243 4.27297 4.34679 4.43086 4.51530 4.55685 4.61329 4.67119 4.71052 4.74772 4.83302 4.92160 5.00381 5.08186 5.17759 5.26804 5.29228 5.42700 5.44040 5.51558 5.62052 5.67154 5.88101 5.94011 6.05878 6.55195 6.72166 6.81029 7.27928 8.84853 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023306 B = 0.002662 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.099119 B =10516.777267 C =11293.961475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.102 3.898 3 O -0.566 6.566 4 C 0.012 3.988 5 N -0.465 5.465 6 C 0.065 3.935 7 C -0.038 4.038 8 C -0.143 4.143 9 C -0.077 4.077 10 C -0.223 4.223 11 C 0.106 3.894 12 O -0.343 6.343 13 C 0.085 3.915 14 C 0.029 3.971 15 C -0.548 4.548 16 H 0.071 0.929 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.977 3.023 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.263 1.263 23 C -0.163 4.163 24 C -0.032 4.032 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.395 0.605 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.057 0.943 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.127 0.873 36 H 0.060 0.940 37 H 0.059 0.941 38 H -0.003 1.003 39 H -0.002 1.002 40 H 0.267 0.733 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.756 9.464 23.664 26.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.060 3.940 3 O -0.374 6.374 4 C -0.117 4.117 5 N -0.188 5.188 6 C -0.063 4.063 7 C -0.038 4.038 8 C -0.161 4.161 9 C -0.095 4.095 10 C -0.242 4.242 11 C 0.061 3.939 12 O -0.258 6.258 13 C 0.011 3.989 14 C -0.008 4.008 15 C -0.586 4.586 16 H 0.089 0.911 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.800 3.200 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.188 1.188 23 C -0.183 4.183 24 C -0.161 4.161 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.246 0.754 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.145 0.855 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.076 0.924 41 H 0.135 0.865 42 H 0.090 0.910 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.775 8.945 23.857 26.364 hybrid contribution 0.583 -0.009 -1.714 1.811 sum -6.192 8.936 22.143 24.668 Atomic orbital electron populations 1.21986 0.91481 1.03559 1.03498 1.22666 0.93970 0.81685 0.95668 1.86497 1.64479 1.22551 1.63829 1.24063 1.01794 0.89172 0.96625 1.68878 1.33615 1.11530 1.04823 1.21630 0.91885 0.92601 1.00148 1.19557 0.96616 0.95786 0.91870 1.21165 1.01606 0.92141 1.01188 1.21247 0.96801 0.99612 0.91855 1.21499 1.06854 0.97671 0.98169 1.19473 0.95597 0.95456 0.83355 1.86077 1.81165 1.39931 1.18631 1.22850 0.99967 0.84665 0.91409 1.18953 0.95609 0.96986 0.89246 1.21371 1.44289 0.98237 0.94662 0.91098 1.26058 0.94229 1.00283 0.99124 1.70121 1.44205 1.30564 1.12173 0.85328 0.79270 0.78416 0.77005 1.18781 1.20706 1.18789 1.20371 1.07264 0.96985 0.93639 1.24743 1.01390 0.92415 0.97544 0.90594 0.90778 0.91108 0.75428 0.87615 0.90330 0.87537 0.92484 0.83259 0.83017 0.85502 0.92216 0.92301 0.98420 0.98406 0.92395 0.86487 0.90971 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.46 71.98 0.68 -1.16 16 2 C 0.10 1.56 2.09 -10.45 -0.02 1.54 16 3 O -0.57 -8.69 13.55 -148.98 -2.02 -10.70 16 4 C 0.01 0.18 7.11 83.58 0.59 0.77 16 5 N -0.47 -8.84 6.13 -932.77 -5.72 -14.56 16 6 C 0.07 1.25 4.94 85.56 0.42 1.67 16 7 C -0.04 -0.94 5.46 -19.88 -0.11 -1.05 16 8 C -0.14 -3.20 9.70 22.28 0.22 -2.98 16 9 C -0.08 -1.89 10.04 22.25 0.22 -1.67 16 10 C -0.22 -7.05 9.04 22.37 0.20 -6.84 16 11 C 0.11 3.90 6.69 22.51 0.15 4.05 16 12 O -0.34 -15.20 10.14 -92.49 -0.94 -16.14 16 13 C 0.09 3.86 4.68 71.98 0.34 4.19 16 14 C 0.03 1.63 5.34 29.85 0.16 1.79 16 15 C -0.55 -31.32 9.11 25.60 0.23 -31.09 16 16 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 17 C 0.00 0.09 5.46 84.65 0.46 0.56 16 18 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 19 Si 0.98 43.71 29.54 68.60 2.03 45.74 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 23 C -0.16 -5.17 9.64 22.37 0.22 -4.95 16 24 C -0.03 -0.61 7.09 83.57 0.59 -0.02 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.07 1.06 7.93 -2.39 -0.02 1.04 16 28 H 0.40 3.09 9.03 -74.05 -0.67 2.43 16 29 H 0.11 1.33 8.11 -2.39 -0.02 1.31 16 30 H 0.08 1.18 7.91 -2.39 -0.02 1.17 16 31 H 0.11 1.57 8.02 -2.38 -0.02 1.56 16 32 H 0.06 1.10 7.24 -2.39 -0.02 1.08 16 33 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.13 3.96 6.30 -2.91 -0.02 3.95 16 36 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 37 H 0.06 2.51 7.66 -2.39 -0.02 2.49 16 38 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.12 3.69 8.06 -2.91 -0.02 3.66 16 42 H 0.07 1.47 7.42 -2.39 -0.02 1.45 16 43 H 0.08 1.66 8.12 -2.38 -0.02 1.64 16 Total: -1.00 -69.88 358.03 -1.68 -71.55 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.33 Total: 16.22 kcal Atomic # 6 Polarization: -39.54 SS G_CDS: 4.36 Total: -35.18 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -5.43 Total: -71.49 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -2.96 Total: -26.84 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -69.88 -1.68 -71.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602688622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.560 kcal (2) G-P(sol) polarization free energy of solvation -69.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds