Wall clock time and date at job start Tue Mar 31 2020 07:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 112.99619 * 2 1 4 4 C 1.46906 * 111.00218 * 48.17492 * 3 2 1 5 5 C 1.50693 * 109.47149 * 179.97438 * 4 3 2 6 6 C 1.38291 * 119.97319 * 269.97307 * 5 4 3 7 7 C 1.38245 * 120.10935 * 179.97438 * 6 5 4 8 8 C 1.38168 * 120.05818 * 359.77434 * 7 6 5 9 9 C 1.38708 * 119.94125 * 0.52591 * 8 7 6 10 10 O 1.35904 * 120.05570 * 179.72127 * 9 8 7 11 11 C 1.42903 * 116.99628 * 359.72917 * 10 9 8 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99711 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00219 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46794 * 90.00022 * 17 15 13 19 19 H 1.48502 * 109.47140 * 210.00005 * 17 15 13 20 20 H 1.48501 * 109.46982 * 330.00118 * 17 15 13 21 21 C 1.38123 * 119.97441 * 90.00180 * 5 4 3 22 22 C 1.54034 * 113.92547 * 131.93002 * 2 1 3 23 23 O 1.44179 * 85.51694 * 91.66524 * 22 2 1 24 24 C 1.44182 * 93.34171 * 24.18908 * 23 22 2 25 25 H 1.09004 * 109.46794 * 69.66523 * 1 2 3 26 26 H 1.09003 * 109.47063 * 189.66297 * 1 2 3 27 27 H 1.08997 * 109.47617 * 309.66781 * 1 2 3 28 28 H 1.00899 * 111.00177 * 172.12469 * 3 2 1 29 29 H 1.09001 * 109.46929 * 59.99238 * 4 3 2 30 30 H 1.08999 * 109.46450 * 299.99986 * 4 3 2 31 31 H 1.08002 * 119.94270 * 0.02562 * 6 5 4 32 32 H 1.08007 * 119.96793 * 180.02562 * 7 6 5 33 33 H 1.08001 * 120.02385 * 180.24916 * 8 7 6 34 34 H 1.09002 * 109.47382 * 59.99787 * 11 10 9 35 35 H 1.09001 * 109.46938 * 299.99774 * 11 10 9 36 36 H 1.09001 * 109.47194 * 299.99575 * 12 11 10 37 37 H 1.08992 * 109.47399 * 59.99748 * 12 11 10 38 38 H 0.97000 * 119.99684 * 179.97438 * 16 15 13 39 39 H 1.08005 * 120.02404 * 359.97075 * 21 5 4 40 40 H 1.08998 * 113.86063 * 205.80630 * 22 2 1 41 41 H 1.08994 * 113.86514 * 337.51919 * 22 2 1 42 42 H 1.08996 * 113.86913 * 221.66328 * 24 23 22 43 43 H 1.09000 * 113.98197 * 89.96588 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1039 1.3523 0.0000 4 6 1.4677 2.1942 1.0220 5 6 2.0814 3.5702 0.9924 6 6 3.1838 3.8521 1.7783 7 6 3.7494 5.1133 1.7530 8 6 3.2170 6.0943 0.9385 9 6 2.1074 5.8159 0.1540 10 8 1.5784 6.7806 -0.6437 11 6 2.2123 8.0612 -0.6204 12 6 1.4819 9.0091 -1.5739 13 6 2.1507 10.3594 -1.5498 14 1 3.0104 10.5249 -0.9174 15 6 1.6651 11.3833 -2.3352 16 7 2.2484 12.5617 -2.3138 17 14 0.1786 11.0966 -3.4296 18 1 -1.0600 11.4198 -2.6767 19 1 0.2709 11.9682 -4.6283 20 1 0.1431 9.6738 -3.8535 21 6 1.5419 4.5491 0.1809 22 6 2.1547 -0.9408 1.0475 23 8 2.1472 -1.9296 -0.0018 24 6 2.1521 -0.9397 -1.0501 25 1 -0.3633 0.3571 -0.9637 26 1 -0.3633 -1.0131 0.1725 27 1 -0.3634 0.6560 0.7910 28 1 3.1041 1.3206 0.1291 29 1 1.6203 1.7497 2.0055 30 1 0.3995 2.2679 0.8184 31 1 3.6042 3.0854 2.4123 32 1 4.6106 5.3309 2.3674 33 1 3.6617 7.0782 0.9161 34 1 3.2509 7.9583 -0.9346 35 1 2.1770 8.4657 0.3911 36 1 1.5167 8.6048 -2.5855 37 1 0.4435 9.1119 -1.2593 38 1 1.9069 13.2820 -2.8666 39 1 0.6809 4.3285 -0.4327 40 1 3.1538 -0.6441 1.3665 41 1 1.4917 -1.1762 1.8799 42 1 1.4869 -1.1741 -1.8812 43 1 3.1494 -0.6413 -1.3731 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602741881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:42 Heat of formation + Delta-G solvation = -29.261511 kcal Electronic energy + Delta-G solvation = -22237.116838 eV Core-core repulsion = 18862.692003 eV Total energy + Delta-G solvation = -3374.424835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15657 -39.87682 -37.66267 -35.61682 -33.36409 -31.87280 -31.12224 -29.79664 -29.18483 -27.18499 -26.91534 -25.41117 -24.44878 -22.42117 -21.41887 -20.18215 -19.55463 -17.85846 -17.09922 -16.70198 -16.50802 -16.24422 -15.82377 -15.70181 -15.46372 -15.06049 -14.32518 -14.12782 -13.99337 -13.48360 -13.40626 -13.00492 -12.88120 -12.60260 -12.56369 -12.45973 -12.21683 -11.85272 -11.56000 -11.54350 -11.34454 -11.10835 -10.82823 -10.64679 -10.20403 -10.12290 -10.01354 -9.83288 -9.36297 -8.88166 -8.72504 -8.63838 -7.95049 -6.15084 -4.16114 1.34674 1.58167 3.23882 3.27541 3.34895 3.40437 3.52087 3.71404 3.83493 4.07531 4.33917 4.37783 4.62893 4.72344 4.85104 4.87341 5.02378 5.07637 5.15341 5.19074 5.20265 5.31421 5.34468 5.37589 5.41576 5.56512 5.61444 5.69882 5.72457 5.78679 5.89748 5.92922 6.09359 6.38855 6.45651 6.53029 6.57030 6.59747 6.85259 6.93898 7.08458 7.21358 7.60737 7.89157 8.36974 8.85445 9.45178 10.97405 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026427 B = 0.002575 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.273197 B =10872.063352 C =11593.141141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.054 3.946 3 N -0.670 5.670 4 C 0.100 3.900 5 C -0.054 4.054 6 C -0.165 4.165 7 C -0.079 4.079 8 C -0.208 4.208 9 C 0.144 3.856 10 O -0.319 6.319 11 C 0.073 3.927 12 C -0.009 4.009 13 C -0.527 4.527 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.881 3.119 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.263 1.263 21 C -0.138 4.138 22 C 0.001 3.999 23 O -0.378 6.378 24 C 0.045 3.955 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.348 0.652 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.266 0.734 39 H 0.128 0.872 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 -26.034 8.051 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.039 4.039 3 N -0.302 5.302 4 C -0.028 4.028 5 C -0.055 4.055 6 C -0.184 4.184 7 C -0.098 4.098 8 C -0.227 4.227 9 C 0.097 3.903 10 O -0.233 6.233 11 C -0.001 4.001 12 C -0.046 4.046 13 C -0.565 4.565 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.708 3.292 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.187 1.187 21 C -0.157 4.157 22 C -0.078 4.078 23 O -0.296 6.296 24 C -0.032 4.032 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.168 0.832 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.146 0.854 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.135 -25.903 7.318 26.941 hybrid contribution 0.035 0.079 0.363 0.373 sum -1.100 -25.824 7.680 26.964 Atomic orbital electron populations 1.21677 0.91064 1.02710 1.03571 1.24229 0.97122 0.87996 0.94509 1.60308 1.09167 1.09979 1.50715 1.20890 0.99439 0.89473 0.92959 1.19369 0.95666 0.94234 0.96194 1.20784 0.97970 0.97209 1.02429 1.20864 0.98830 0.92726 0.97344 1.21427 0.98825 1.01384 1.01082 1.19157 0.91791 0.89350 0.89999 1.86129 1.55453 1.21477 1.60191 1.23083 0.96962 0.78962 1.01143 1.19585 0.96500 0.93808 0.94743 1.20837 1.15768 0.93041 1.26849 0.90764 1.24938 0.96921 0.94796 0.96377 1.69893 1.40993 1.02377 1.40295 0.86753 0.83181 0.78872 0.80440 1.20060 1.21168 1.18720 1.20240 1.02699 0.90551 1.02202 1.24883 1.00683 0.88702 0.93539 1.89688 1.95702 1.27234 1.16980 1.24216 1.01013 0.85459 0.92551 0.90811 0.91229 0.91354 0.83250 0.94091 0.89452 0.86761 0.86099 0.85097 0.92492 0.92546 0.95388 0.95843 0.92437 0.85412 0.90368 0.89189 0.88591 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 8.80 37.16 0.33 -0.57 16 2 C 0.05 0.39 1.30 -130.52 -0.17 0.22 16 3 N -0.67 -5.54 6.45 -107.93 -0.70 -6.24 16 4 C 0.10 0.86 5.15 -4.98 -0.03 0.84 16 5 C -0.05 -0.62 5.39 -104.65 -0.56 -1.18 16 6 C -0.17 -1.80 9.70 -39.56 -0.38 -2.18 16 7 C -0.08 -0.97 10.04 -39.60 -0.40 -1.36 16 8 C -0.21 -3.09 9.04 -39.43 -0.36 -3.45 16 9 C 0.14 2.37 6.69 -39.22 -0.26 2.11 16 10 O -0.32 -6.19 10.14 -19.44 -0.20 -6.39 16 11 C 0.07 1.48 4.68 37.16 0.17 1.66 16 12 C -0.01 -0.21 4.41 -27.88 -0.12 -0.34 16 13 C -0.53 -14.78 9.66 -34.44 -0.33 -15.12 16 14 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 17 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 21 C -0.14 -1.94 9.64 -39.43 -0.38 -2.32 16 22 C 0.00 0.01 8.44 37.61 0.32 0.33 16 23 O -0.38 -3.61 12.38 -35.23 -0.44 -4.05 16 24 C 0.04 0.34 8.59 37.61 0.32 0.67 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.44 8.06 -51.93 -0.42 0.03 16 27 H 0.07 0.43 6.11 -51.93 -0.32 0.11 16 28 H 0.35 2.69 8.56 -39.29 -0.34 2.36 16 29 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 30 H 0.09 0.74 6.22 -51.93 -0.32 0.42 16 31 H 0.11 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.13 1.94 6.30 -52.49 -0.33 1.61 16 34 H 0.06 1.13 7.65 -51.93 -0.40 0.73 16 35 H 0.06 1.11 7.67 -51.93 -0.40 0.71 16 36 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 37 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.13 1.74 8.06 -52.48 -0.42 1.31 16 40 H 0.08 0.49 8.03 -51.93 -0.42 0.07 16 41 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 42 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -31.05 352.57 -8.53 -39.58 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.67 Total: 0.08 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -1.95 Total: -18.73 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.08 Total: -32.64 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.63 Total: -10.43 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.05 -8.53 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602741881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.323 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds