Wall clock time and date at job start Tue Mar 31 2020 07:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 112.99619 * 2 1 4 4 C 1.46906 * 111.00218 * 48.17492 * 3 2 1 5 5 C 1.50693 * 109.47149 * 179.97438 * 4 3 2 6 6 C 1.38291 * 119.97319 * 269.97307 * 5 4 3 7 7 C 1.38245 * 120.10935 * 179.97438 * 6 5 4 8 8 C 1.38168 * 120.05818 * 359.77434 * 7 6 5 9 9 C 1.38708 * 119.94125 * 0.52591 * 8 7 6 10 10 O 1.35904 * 120.05570 * 179.72127 * 9 8 7 11 11 C 1.42903 * 116.99628 * 359.72917 * 10 9 8 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99711 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00219 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46794 * 90.00022 * 17 15 13 19 19 H 1.48502 * 109.47140 * 210.00005 * 17 15 13 20 20 H 1.48501 * 109.46982 * 330.00118 * 17 15 13 21 21 C 1.38123 * 119.97441 * 90.00180 * 5 4 3 22 22 C 1.54034 * 113.92547 * 131.93002 * 2 1 3 23 23 O 1.44179 * 85.51694 * 91.66524 * 22 2 1 24 24 C 1.44182 * 93.34171 * 24.18908 * 23 22 2 25 25 H 1.09004 * 109.46794 * 69.66523 * 1 2 3 26 26 H 1.09003 * 109.47063 * 189.66297 * 1 2 3 27 27 H 1.08997 * 109.47617 * 309.66781 * 1 2 3 28 28 H 1.00899 * 111.00177 * 172.12469 * 3 2 1 29 29 H 1.09001 * 109.46929 * 59.99238 * 4 3 2 30 30 H 1.08999 * 109.46450 * 299.99986 * 4 3 2 31 31 H 1.08002 * 119.94270 * 0.02562 * 6 5 4 32 32 H 1.08007 * 119.96793 * 180.02562 * 7 6 5 33 33 H 1.08001 * 120.02385 * 180.24916 * 8 7 6 34 34 H 1.09002 * 109.47382 * 59.99787 * 11 10 9 35 35 H 1.09001 * 109.46938 * 299.99774 * 11 10 9 36 36 H 1.09001 * 109.47194 * 299.99575 * 12 11 10 37 37 H 1.08992 * 109.47399 * 59.99748 * 12 11 10 38 38 H 0.97000 * 119.99684 * 179.97438 * 16 15 13 39 39 H 1.08005 * 120.02404 * 359.97075 * 21 5 4 40 40 H 1.08998 * 113.86063 * 205.80630 * 22 2 1 41 41 H 1.08994 * 113.86514 * 337.51919 * 22 2 1 42 42 H 1.08996 * 113.86913 * 221.66328 * 24 23 22 43 43 H 1.09000 * 113.98197 * 89.96588 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1039 1.3523 0.0000 4 6 1.4677 2.1942 1.0220 5 6 2.0814 3.5702 0.9924 6 6 3.1838 3.8521 1.7783 7 6 3.7494 5.1133 1.7530 8 6 3.2170 6.0943 0.9385 9 6 2.1074 5.8159 0.1540 10 8 1.5784 6.7806 -0.6437 11 6 2.2123 8.0612 -0.6204 12 6 1.4819 9.0091 -1.5739 13 6 2.1507 10.3594 -1.5498 14 1 3.0104 10.5249 -0.9174 15 6 1.6651 11.3833 -2.3352 16 7 2.2484 12.5617 -2.3138 17 14 0.1786 11.0966 -3.4296 18 1 -1.0600 11.4198 -2.6767 19 1 0.2709 11.9682 -4.6283 20 1 0.1431 9.6738 -3.8535 21 6 1.5419 4.5491 0.1809 22 6 2.1547 -0.9408 1.0475 23 8 2.1472 -1.9296 -0.0018 24 6 2.1521 -0.9397 -1.0501 25 1 -0.3633 0.3571 -0.9637 26 1 -0.3633 -1.0131 0.1725 27 1 -0.3634 0.6560 0.7910 28 1 3.1041 1.3206 0.1291 29 1 1.6203 1.7497 2.0055 30 1 0.3995 2.2679 0.8184 31 1 3.6042 3.0854 2.4123 32 1 4.6106 5.3309 2.3674 33 1 3.6617 7.0782 0.9161 34 1 3.2509 7.9583 -0.9346 35 1 2.1770 8.4657 0.3911 36 1 1.5167 8.6048 -2.5855 37 1 0.4435 9.1119 -1.2593 38 1 1.9069 13.2820 -2.8666 39 1 0.6809 4.3285 -0.4327 40 1 3.1538 -0.6441 1.3665 41 1 1.4917 -1.1762 1.8799 42 1 1.4869 -1.1741 -1.8812 43 1 3.1494 -0.6413 -1.3731 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602741881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:42 Heat of formation + Delta-G solvation = -50.324714 kcal Electronic energy + Delta-G solvation = -22238.030207 eV Core-core repulsion = 18862.692003 eV Total energy + Delta-G solvation = -3375.338204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.75200 -41.03474 -38.82513 -36.39066 -35.40331 -32.93160 -32.70566 -30.90602 -30.05909 -27.84215 -27.48992 -27.06912 -25.38556 -23.47117 -22.99456 -21.53425 -20.10657 -19.34564 -18.45531 -17.70335 -17.12581 -16.98007 -16.96884 -16.88165 -16.78657 -16.25009 -15.85305 -15.02956 -14.93539 -14.60171 -14.43089 -14.33708 -14.15154 -13.90027 -13.37905 -13.19859 -13.06934 -12.99855 -12.83008 -12.57071 -12.51173 -12.26040 -12.12645 -11.87433 -11.70015 -11.68392 -11.54271 -11.39809 -10.82630 -10.70136 -9.81067 -9.39137 -9.09423 -8.36001 -6.42839 0.34225 0.53678 1.35424 1.37016 1.49826 2.32431 2.33344 2.66113 2.75431 2.98964 3.13036 3.39209 3.77829 3.89507 3.92673 4.12013 4.15917 4.20838 4.21509 4.30820 4.36272 4.41958 4.51916 4.56717 4.61736 4.65767 4.77267 4.81288 4.81568 4.89791 5.04111 5.08253 5.13401 5.15461 5.23417 5.28724 5.43749 5.48057 5.54953 5.61442 5.86197 5.98998 6.15025 6.35589 6.53737 6.62693 7.22427 8.79684 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026427 B = 0.002575 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.273197 B =10872.063352 C =11593.141141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.058 3.942 3 N -0.678 5.678 4 C 0.105 3.895 5 C -0.046 4.046 6 C -0.151 4.151 7 C -0.080 4.080 8 C -0.224 4.224 9 C 0.106 3.894 10 O -0.337 6.337 11 C 0.088 3.912 12 C -0.006 4.006 13 C -0.537 4.537 14 H 0.042 0.958 15 C 0.013 3.987 16 N -0.942 5.942 17 Si 0.949 3.051 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.251 1.251 21 C -0.147 4.147 22 C 0.003 3.997 23 O -0.404 6.404 24 C 0.040 3.960 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.352 0.648 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.121 0.879 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.270 0.730 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 -28.574 8.844 29.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.034 4.034 3 N -0.311 5.311 4 C -0.023 4.023 5 C -0.047 4.047 6 C -0.169 4.169 7 C -0.098 4.098 8 C -0.243 4.243 9 C 0.060 3.940 10 O -0.252 6.252 11 C 0.014 3.986 12 C -0.044 4.044 13 C -0.575 4.575 14 H 0.060 0.940 15 C -0.185 4.185 16 N -0.581 5.581 17 Si 0.772 3.228 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.175 1.175 21 C -0.166 4.166 22 C -0.076 4.076 23 O -0.322 6.322 24 C -0.037 4.037 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.172 0.828 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.139 0.861 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.144 0.856 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.701 -28.470 8.126 29.656 hybrid contribution 0.314 0.751 0.225 0.845 sum -1.387 -27.719 8.352 28.983 Atomic orbital electron populations 1.21683 0.90780 1.03012 1.03530 1.24180 0.97270 0.87358 0.94567 1.60259 1.09518 1.10460 1.50819 1.20876 0.99268 0.87930 0.94208 1.19684 0.95346 0.94870 0.94793 1.21218 0.96871 0.97328 1.01517 1.21203 0.99359 0.92585 0.96665 1.21499 0.98884 1.01931 1.02021 1.19482 0.93492 0.89588 0.91397 1.86032 1.56059 1.21272 1.61812 1.22640 0.96304 0.79591 1.00107 1.19442 0.96565 0.92699 0.95658 1.21106 1.15056 0.95179 1.26154 0.94004 1.25885 1.00217 0.94386 0.97995 1.70024 1.42980 1.03502 1.41642 0.85674 0.79234 0.79402 0.78498 1.18897 1.20417 1.17470 1.20407 1.02938 0.90264 1.02978 1.25016 1.01503 0.87778 0.93327 1.89667 1.95848 1.28539 1.18133 1.24329 1.01508 0.85222 0.92596 0.91339 0.90969 0.90729 0.82805 0.91865 0.89356 0.83142 0.83540 0.86128 0.92597 0.92499 0.95492 0.95510 0.92074 0.85575 0.89279 0.88225 0.88213 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.80 71.98 0.63 -0.88 16 2 C 0.06 0.71 1.30 4.23 0.01 0.72 16 3 N -0.68 -9.34 6.45 -506.42 -3.27 -12.61 16 4 C 0.10 1.46 5.15 85.55 0.44 1.90 16 5 C -0.05 -0.93 5.39 -19.88 -0.11 -1.04 16 6 C -0.15 -2.74 9.70 22.28 0.22 -2.52 16 7 C -0.08 -1.76 10.04 22.25 0.22 -1.54 16 8 C -0.22 -6.59 9.04 22.37 0.20 -6.39 16 9 C 0.11 3.48 6.69 22.50 0.15 3.63 16 10 O -0.34 -13.30 10.14 -92.47 -0.94 -14.24 16 11 C 0.09 3.70 4.68 71.98 0.34 4.03 16 12 C -0.01 -0.30 4.41 29.85 0.13 -0.17 16 13 C -0.54 -30.97 9.66 25.60 0.25 -30.72 16 14 H 0.04 2.60 7.99 -2.91 -0.02 2.58 16 15 C 0.01 0.78 5.47 84.66 0.46 1.24 16 16 N -0.94 -58.30 13.96 21.45 0.30 -58.01 16 17 Si 0.95 44.32 27.47 68.60 1.88 46.20 16 18 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 21 C -0.15 -3.99 9.64 22.36 0.22 -3.78 16 22 C 0.00 0.03 8.44 72.27 0.61 0.64 16 23 O -0.40 -6.99 12.38 -148.98 -1.85 -8.83 16 24 C 0.04 0.55 8.59 72.27 0.62 1.17 16 25 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.07 0.79 8.06 -2.39 -0.02 0.77 16 27 H 0.07 0.75 6.11 -2.39 -0.01 0.74 16 28 H 0.35 4.34 8.56 -89.69 -0.77 3.57 16 29 H 0.06 0.64 8.08 -2.39 -0.02 0.62 16 30 H 0.09 1.26 6.22 -2.39 -0.01 1.24 16 31 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 32 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.12 3.69 6.30 -2.91 -0.02 3.67 16 34 H 0.06 2.30 7.65 -2.39 -0.02 2.28 16 35 H 0.06 2.32 7.67 -2.39 -0.02 2.31 16 36 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 37 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 38 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 40 H 0.09 0.82 8.03 -2.39 -0.02 0.81 16 41 H 0.10 0.94 8.10 -2.39 -0.02 0.92 16 42 H 0.10 1.23 8.10 -2.39 -0.02 1.21 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -68.06 352.57 0.70 -67.36 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.18 Total: 13.82 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 4.39 Total: -33.69 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -2.97 Total: -70.61 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -2.78 Total: -23.07 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.20 kcal Total: -68.06 0.70 -67.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602741881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.032 kcal (2) G-P(sol) polarization free energy of solvation -68.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds