Wall clock time and date at job start Tue Mar 31 2020 07:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.88124 * 2 1 4 4 O 1.42907 * 109.46937 * 58.96869 * 3 2 1 5 5 C 1.54315 * 109.89249 * 121.19881 * 2 1 3 6 6 C 1.55139 * 103.01748 * 97.11942 * 5 2 1 7 7 H 1.09002 * 110.99703 * 277.52681 * 6 5 2 8 8 O 1.42901 * 110.99184 * 153.74764 * 6 5 2 9 9 C 1.54902 * 101.65460 * 35.65708 * 6 5 2 10 10 N 1.47442 * 109.88670 * 238.97214 * 2 1 3 11 11 C 1.46895 * 111.00479 * 117.33545 * 10 2 1 12 12 C 1.50695 * 109.47369 * 169.99810 * 11 10 2 13 13 C 1.38633 * 119.74983 * 90.00411 * 12 11 10 14 14 C 1.37624 * 120.24962 * 180.02562 * 13 12 11 15 15 C 1.40717 * 119.74249 * 359.97438 * 14 13 12 16 16 C 1.41393 * 120.24000 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99954 * 335.85650 * 16 15 14 18 18 C 1.39946 * 120.00202 * 156.13958 * 16 15 14 19 19 N 1.30829 * 119.99309 * 341.49001 * 18 16 15 20 20 Si 1.86796 * 120.00572 * 161.49606 * 18 16 15 21 21 H 1.48500 * 109.46977 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47160 * 119.99762 * 20 18 16 23 23 H 1.48502 * 109.47233 * 240.00013 * 20 18 16 24 24 C 1.40708 * 119.51154 * 0.25342 * 15 14 13 25 25 C 1.37616 * 119.74603 * 359.49539 * 24 15 14 26 26 H 1.08999 * 109.46928 * 181.02957 * 1 2 3 27 27 H 1.09003 * 109.46733 * 301.03262 * 1 2 3 28 28 H 1.08999 * 109.47240 * 61.03048 * 1 2 3 29 29 H 1.08995 * 109.47559 * 178.97330 * 3 2 1 30 30 H 1.09005 * 109.46894 * 298.97036 * 3 2 1 31 31 H 0.96699 * 113.99756 * 180.02562 * 4 3 2 32 32 H 1.08996 * 110.71153 * 215.50516 * 5 2 1 33 33 H 1.09001 * 110.70390 * 338.74122 * 5 2 1 34 34 H 0.96699 * 114.00172 * 180.02562 * 8 6 5 35 35 H 1.09000 * 110.37837 * 204.10217 * 9 6 5 36 36 H 1.08997 * 110.37506 * 81.75937 * 9 6 5 37 37 H 1.09008 * 109.46765 * 49.99651 * 11 10 2 38 38 H 1.08999 * 109.47117 * 289.99936 * 11 10 2 39 39 H 1.07999 * 119.87851 * 0.04031 * 13 12 11 40 40 H 1.08002 * 120.12486 * 179.97438 * 14 13 12 41 41 H 0.97001 * 119.99345 * 179.97438 * 19 18 16 42 42 H 1.08007 * 120.12397 * 179.74283 * 24 15 14 43 43 H 1.08002 * 119.87627 * 180.26957 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0503 1.4388 0.0000 4 8 1.5591 2.1229 1.1545 5 6 2.0551 -0.7517 1.2412 6 6 2.3501 -2.1718 0.6908 7 1 1.4424 -2.7743 0.6579 8 8 3.3634 -2.8196 1.4626 9 6 2.8585 -1.8544 -0.7376 10 7 2.0315 -0.7147 -1.1881 11 6 2.8028 0.1844 -2.0568 12 6 3.5005 -0.6220 -3.1216 13 6 2.8628 -0.8660 -4.3282 14 6 3.4902 -1.6017 -5.3076 15 6 4.7840 -2.1064 -5.0806 16 6 5.4381 -2.8640 -6.0793 17 1 4.8593 -3.3861 -6.8268 18 6 6.8353 -2.9420 -6.0957 19 7 7.5474 -2.0577 -5.4458 20 14 7.6835 -4.3086 -7.0456 21 1 6.6612 -5.1724 -7.6890 22 1 8.5594 -3.7167 -8.0885 23 1 8.5040 -5.1235 -6.1140 24 6 5.4195 -1.8566 -3.8504 25 6 4.7752 -1.1141 -2.8874 26 1 -0.3633 -1.0275 0.0185 27 1 -0.3633 0.5298 0.8806 28 1 -0.3634 0.4977 -0.8991 29 1 3.1401 1.4312 0.0184 30 1 1.7058 1.9498 -0.8991 31 1 1.8496 3.0430 1.2197 32 1 2.9667 -0.2867 1.6164 33 1 1.2927 -0.7906 2.0192 34 1 3.5822 -3.7103 1.1561 35 1 2.7105 -2.7130 -1.3926 36 1 3.9112 -1.5728 -0.7118 37 1 3.5437 0.7179 -1.4611 38 1 2.1297 0.9015 -2.5267 39 1 1.8701 -0.4770 -4.5003 40 1 2.9914 -1.7908 -6.2466 41 1 8.5158 -2.1120 -5.4568 42 1 6.4108 -2.2428 -3.6641 43 1 5.2628 -0.9174 -1.9440 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602898045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:09 Heat of formation + Delta-G solvation = -71.324702 kcal Electronic energy + Delta-G solvation = -23844.591658 eV Core-core repulsion = 20468.342826 eV Total energy + Delta-G solvation = -3376.248832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.15523 -37.56463 -36.84144 -35.66565 -33.93788 -32.10229 -30.54021 -29.47904 -29.17360 -26.96740 -26.03915 -24.65271 -23.26567 -21.45454 -20.71273 -19.86007 -18.71615 -17.53778 -17.38032 -17.28828 -15.66109 -15.34647 -15.17322 -14.91781 -14.18892 -14.12818 -13.86449 -13.62837 -13.41398 -13.01897 -12.67284 -12.66910 -12.34806 -12.15795 -11.96650 -11.71671 -11.65206 -11.42267 -11.17535 -11.03822 -10.99114 -10.76698 -10.52300 -10.38062 -10.30022 -10.00917 -9.82656 -9.56947 -9.39429 -9.15434 -8.01463 -7.47886 -7.32782 -6.81010 -4.38496 2.68487 3.03602 3.05732 3.09475 3.13259 3.85209 3.89950 4.16620 4.46720 4.65955 4.72670 4.86653 5.01443 5.19538 5.23539 5.34742 5.53826 5.62842 5.66344 5.74449 5.76975 5.95034 5.99834 6.04354 6.09788 6.17459 6.21791 6.29494 6.36761 6.40478 6.47618 6.90857 7.03859 7.18041 7.29794 7.32706 7.35905 7.53799 7.58092 7.68839 7.85331 8.02264 8.09333 8.26808 8.60400 8.86177 8.94130 10.13575 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024416 B = 0.003855 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.529148 B = 7261.812563 C = 7710.884562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.098 3.902 3 C 0.066 3.934 4 O -0.570 6.570 5 C -0.113 4.113 6 C 0.086 3.914 7 H 0.069 0.931 8 O -0.564 6.564 9 C 0.021 3.979 10 N -0.504 5.504 11 C 0.106 3.894 12 C -0.217 4.217 13 C -0.068 4.068 14 C -0.229 4.229 15 C 0.114 3.886 16 C -0.462 4.462 17 H 0.078 0.922 18 C 0.077 3.923 19 N -0.792 5.792 20 Si 0.906 3.094 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.272 1.272 24 C -0.167 4.167 25 C -0.092 4.092 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.376 0.624 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.380 0.620 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.032 0.968 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.280 0.720 42 H 0.116 0.884 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.400 3.085 10.009 12.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.009 3.991 3 C -0.013 4.013 4 O -0.375 6.375 5 C -0.152 4.152 6 C 0.026 3.974 7 H 0.087 0.913 8 O -0.369 6.369 9 C -0.107 4.107 10 N -0.230 5.230 11 C -0.020 4.020 12 C -0.219 4.219 13 C -0.087 4.087 14 C -0.249 4.249 15 C 0.111 3.889 16 C -0.492 4.492 17 H 0.096 0.904 18 C -0.141 4.141 19 N -0.417 5.417 20 Si 0.730 3.270 21 H -0.184 1.184 22 H -0.200 1.200 23 H -0.197 1.197 24 C -0.186 4.186 25 C -0.111 4.111 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.223 0.777 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.227 0.773 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.877 2.975 10.200 13.226 hybrid contribution 1.574 -0.193 -0.593 1.693 sum -6.303 2.782 9.607 11.822 Atomic orbital electron populations 1.21675 0.92953 1.01693 1.01520 1.21686 0.96730 0.90922 0.89811 1.22838 0.97281 0.93304 0.87852 1.86442 1.76490 1.28749 1.45776 1.22681 1.01688 0.93462 0.97328 1.23040 0.90104 0.93734 0.90475 0.91325 1.86457 1.59150 1.33926 1.57337 1.23678 0.97233 0.95204 0.94567 1.63966 1.36812 1.08472 1.13759 1.21029 0.94396 0.93673 0.92905 1.18841 0.96225 1.10719 0.96102 1.20330 0.96982 0.98018 0.93333 1.20969 0.98464 1.06695 0.98761 1.17622 0.90774 0.88748 0.91753 1.19646 0.91119 1.26762 1.11631 0.90411 1.25918 0.97980 0.95428 0.94793 1.69843 1.07660 1.29639 1.34538 0.86300 0.79526 0.81417 0.79740 1.18358 1.19977 1.19684 1.21261 1.00813 1.03342 0.93205 1.20517 0.94157 0.99057 0.97334 0.92534 0.92094 0.92569 0.93281 0.92677 0.77715 0.90739 0.90436 0.77282 0.89827 0.91833 0.95006 0.91403 0.89439 0.89107 0.90920 0.86617 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 8.56 37.16 0.32 -1.20 16 2 C 0.10 1.35 0.97 -130.61 -0.13 1.22 16 3 C 0.07 0.83 4.51 37.16 0.17 0.99 16 4 O -0.57 -6.42 12.67 -35.23 -0.45 -6.87 16 5 C -0.11 -1.55 5.49 -24.91 -0.14 -1.69 16 6 C 0.09 1.18 4.42 -24.60 -0.11 1.07 16 7 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 8 O -0.56 -7.63 13.47 -35.23 -0.47 -8.11 16 9 C 0.02 0.34 5.08 -2.30 -0.01 0.33 16 10 N -0.50 -8.01 4.93 -217.18 -1.07 -9.08 16 11 C 0.11 1.82 4.09 -4.98 -0.02 1.80 16 12 C -0.22 -4.55 4.66 -104.33 -0.49 -5.03 16 13 C -0.07 -1.49 9.67 -39.66 -0.38 -1.87 16 14 C -0.23 -5.56 9.80 -38.87 -0.38 -5.94 16 15 C 0.11 2.98 5.58 -106.83 -0.60 2.38 16 16 C -0.46 -12.12 9.05 -37.74 -0.34 -12.47 16 17 H 0.08 1.97 7.91 -52.48 -0.42 1.56 16 18 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 19 N -0.79 -20.22 10.98 55.55 0.61 -19.61 16 20 Si 0.91 18.41 29.60 -169.99 -5.03 13.38 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.17 -4.23 8.70 -38.88 -0.34 -4.57 16 25 C -0.09 -2.06 8.15 -39.66 -0.32 -2.39 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.73 7.65 -51.93 -0.40 0.33 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.65 6.56 -51.93 -0.34 0.30 16 30 H 0.06 0.68 6.87 -51.93 -0.36 0.32 16 31 H 0.38 2.57 9.12 45.56 0.42 2.99 16 32 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 33 H 0.08 1.00 7.83 -51.93 -0.41 0.59 16 34 H 0.38 3.67 9.12 45.56 0.42 4.08 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.06 1.12 5.68 -51.93 -0.30 0.83 16 37 H 0.03 0.53 5.80 -51.92 -0.30 0.23 16 38 H 0.07 1.11 7.26 -51.93 -0.38 0.73 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 42 H 0.12 3.06 6.16 -52.48 -0.32 2.73 16 43 H 0.08 1.72 7.09 -52.49 -0.37 1.34 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -28.78 338.70 -9.00 -37.78 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -4.83 Total: 12.95 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -2.86 Total: -25.55 kcal Atomic # 7 Polarization: -28.23 SS G_CDS: -0.46 Total: -28.69 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.92 Total: -14.98 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.78 -9.00 -37.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602898045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.544 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds