Wall clock time and date at job start Tue Mar 31 2020 07:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.88124 * 2 1 4 4 O 1.42907 * 109.46937 * 58.96869 * 3 2 1 5 5 C 1.54315 * 109.89249 * 121.19881 * 2 1 3 6 6 C 1.55139 * 103.01748 * 97.11942 * 5 2 1 7 7 H 1.09002 * 110.99703 * 277.52681 * 6 5 2 8 8 O 1.42901 * 110.99184 * 153.74764 * 6 5 2 9 9 C 1.54902 * 101.65460 * 35.65708 * 6 5 2 10 10 N 1.47442 * 109.88670 * 238.97214 * 2 1 3 11 11 C 1.46895 * 111.00479 * 117.33545 * 10 2 1 12 12 C 1.50695 * 109.47369 * 169.99810 * 11 10 2 13 13 C 1.38633 * 119.74983 * 90.00411 * 12 11 10 14 14 C 1.37624 * 120.24962 * 180.02562 * 13 12 11 15 15 C 1.40717 * 119.74249 * 359.97438 * 14 13 12 16 16 C 1.41393 * 120.24000 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99954 * 335.85650 * 16 15 14 18 18 C 1.39946 * 120.00202 * 156.13958 * 16 15 14 19 19 N 1.30829 * 119.99309 * 341.49001 * 18 16 15 20 20 Si 1.86796 * 120.00572 * 161.49606 * 18 16 15 21 21 H 1.48500 * 109.46977 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47160 * 119.99762 * 20 18 16 23 23 H 1.48502 * 109.47233 * 240.00013 * 20 18 16 24 24 C 1.40708 * 119.51154 * 0.25342 * 15 14 13 25 25 C 1.37616 * 119.74603 * 359.49539 * 24 15 14 26 26 H 1.08999 * 109.46928 * 181.02957 * 1 2 3 27 27 H 1.09003 * 109.46733 * 301.03262 * 1 2 3 28 28 H 1.08999 * 109.47240 * 61.03048 * 1 2 3 29 29 H 1.08995 * 109.47559 * 178.97330 * 3 2 1 30 30 H 1.09005 * 109.46894 * 298.97036 * 3 2 1 31 31 H 0.96699 * 113.99756 * 180.02562 * 4 3 2 32 32 H 1.08996 * 110.71153 * 215.50516 * 5 2 1 33 33 H 1.09001 * 110.70390 * 338.74122 * 5 2 1 34 34 H 0.96699 * 114.00172 * 180.02562 * 8 6 5 35 35 H 1.09000 * 110.37837 * 204.10217 * 9 6 5 36 36 H 1.08997 * 110.37506 * 81.75937 * 9 6 5 37 37 H 1.09008 * 109.46765 * 49.99651 * 11 10 2 38 38 H 1.08999 * 109.47117 * 289.99936 * 11 10 2 39 39 H 1.07999 * 119.87851 * 0.04031 * 13 12 11 40 40 H 1.08002 * 120.12486 * 179.97438 * 14 13 12 41 41 H 0.97001 * 119.99345 * 179.97438 * 19 18 16 42 42 H 1.08007 * 120.12397 * 179.74283 * 24 15 14 43 43 H 1.08002 * 119.87627 * 180.26957 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0503 1.4388 0.0000 4 8 1.5591 2.1229 1.1545 5 6 2.0551 -0.7517 1.2412 6 6 2.3501 -2.1718 0.6908 7 1 1.4424 -2.7743 0.6579 8 8 3.3634 -2.8196 1.4626 9 6 2.8585 -1.8544 -0.7376 10 7 2.0315 -0.7147 -1.1881 11 6 2.8028 0.1844 -2.0568 12 6 3.5005 -0.6220 -3.1216 13 6 2.8628 -0.8660 -4.3282 14 6 3.4902 -1.6017 -5.3076 15 6 4.7840 -2.1064 -5.0806 16 6 5.4381 -2.8640 -6.0793 17 1 4.8593 -3.3861 -6.8268 18 6 6.8353 -2.9420 -6.0957 19 7 7.5474 -2.0577 -5.4458 20 14 7.6835 -4.3086 -7.0456 21 1 6.6612 -5.1724 -7.6890 22 1 8.5594 -3.7167 -8.0885 23 1 8.5040 -5.1235 -6.1140 24 6 5.4195 -1.8566 -3.8504 25 6 4.7752 -1.1141 -2.8874 26 1 -0.3633 -1.0275 0.0185 27 1 -0.3633 0.5298 0.8806 28 1 -0.3634 0.4977 -0.8991 29 1 3.1401 1.4312 0.0184 30 1 1.7058 1.9498 -0.8991 31 1 1.8496 3.0430 1.2197 32 1 2.9667 -0.2867 1.6164 33 1 1.2927 -0.7906 2.0192 34 1 3.5822 -3.7103 1.1561 35 1 2.7105 -2.7130 -1.3926 36 1 3.9112 -1.5728 -0.7118 37 1 3.5437 0.7179 -1.4611 38 1 2.1297 0.9015 -2.5267 39 1 1.8701 -0.4770 -4.5003 40 1 2.9914 -1.7908 -6.2466 41 1 8.5158 -2.1120 -5.4568 42 1 6.4108 -2.2428 -3.6641 43 1 5.2628 -0.9174 -1.9440 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602898045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:08 Heat of formation + Delta-G solvation = -93.107129 kcal Electronic energy + Delta-G solvation = -23845.536215 eV Core-core repulsion = 20468.342826 eV Total energy + Delta-G solvation = -3377.193389 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35307 -39.30513 -37.82366 -36.79781 -35.66086 -33.56110 -31.71816 -31.24949 -30.84563 -28.14662 -27.54781 -25.82720 -24.78511 -23.07107 -22.26031 -21.45812 -19.86064 -19.22744 -18.49967 -18.42199 -17.20557 -16.75135 -16.36646 -16.14214 -15.78593 -15.56146 -15.34426 -14.90327 -14.69970 -14.30657 -14.21825 -14.02502 -13.77260 -13.52741 -13.31883 -13.22030 -13.02894 -12.83799 -12.67238 -12.53687 -12.35053 -12.12818 -11.98318 -11.90053 -11.39748 -11.37091 -11.22703 -11.02857 -10.94398 -10.87179 -9.38181 -9.32460 -9.11261 -8.65489 -6.33552 0.92398 1.15790 1.37265 1.48066 1.52460 2.19855 2.60167 2.83943 3.23557 3.45494 3.56791 3.76587 3.82901 3.99206 4.12198 4.14049 4.27836 4.30718 4.32413 4.48689 4.52484 4.62025 4.63363 4.77836 4.88552 4.94401 4.97032 5.01631 5.04048 5.07959 5.15261 5.16600 5.36744 5.45406 5.47758 5.70528 5.91380 5.98751 6.10301 6.17677 6.26303 6.39624 6.70200 6.78332 6.86002 6.94395 7.03917 8.31684 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024416 B = 0.003855 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.529148 B = 7261.812563 C = 7710.884562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.095 3.905 3 C 0.071 3.929 4 O -0.577 6.577 5 C -0.110 4.110 6 C 0.095 3.905 7 H 0.084 0.916 8 O -0.575 6.575 9 C 0.023 3.977 10 N -0.508 5.508 11 C 0.112 3.888 12 C -0.201 4.201 13 C -0.070 4.070 14 C -0.245 4.245 15 C 0.082 3.918 16 C -0.502 4.502 17 H 0.073 0.927 18 C 0.037 3.963 19 N -0.825 5.825 20 Si 0.979 3.021 21 H -0.259 1.259 22 H -0.265 1.265 23 H -0.264 1.264 24 C -0.190 4.190 25 C -0.090 4.090 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.396 0.604 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.395 0.605 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.039 0.961 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.287 0.713 42 H 0.097 0.903 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.568 3.569 11.057 14.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.006 3.994 3 C -0.008 4.008 4 O -0.384 6.384 5 C -0.149 4.149 6 C 0.035 3.965 7 H 0.102 0.898 8 O -0.383 6.383 9 C -0.106 4.106 10 N -0.234 5.234 11 C -0.015 4.015 12 C -0.203 4.203 13 C -0.089 4.089 14 C -0.264 4.264 15 C 0.080 3.920 16 C -0.531 4.531 17 H 0.091 0.909 18 C -0.178 4.178 19 N -0.451 5.451 20 Si 0.800 3.200 21 H -0.182 1.182 22 H -0.190 1.190 23 H -0.189 1.189 24 C -0.209 4.209 25 C -0.109 4.109 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.246 0.754 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.245 0.755 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.054 3.477 11.260 14.861 hybrid contribution 1.839 -0.241 -0.785 2.013 sum -7.215 3.235 10.476 13.125 Atomic orbital electron populations 1.21631 0.91775 1.01964 1.01924 1.21783 0.97469 0.91521 0.88627 1.22667 0.96694 0.92801 0.88636 1.86392 1.76512 1.30431 1.45065 1.22669 1.01481 0.93144 0.97575 1.22986 0.90466 0.94240 0.88809 0.89831 1.86425 1.59211 1.35248 1.57397 1.23593 0.96239 0.94757 0.95976 1.63895 1.36068 1.08433 1.14968 1.20985 0.94843 0.93420 0.92233 1.19233 0.95422 1.08920 0.96685 1.20633 0.98004 0.97211 0.93023 1.21166 0.98190 1.07327 0.99735 1.17939 0.91950 0.89814 0.92301 1.19867 0.92357 1.28436 1.12476 0.90860 1.26730 0.98055 0.97351 0.95632 1.69890 1.08277 1.31083 1.35874 0.85201 0.78255 0.78106 0.78419 1.18208 1.19010 1.18883 1.21202 1.00554 1.05087 0.94063 1.20673 0.94830 0.98288 0.97111 0.92385 0.91213 0.92582 0.94100 0.92090 0.75381 0.91933 0.89256 0.75474 0.91545 0.93792 0.94272 0.89817 0.86773 0.88775 0.90199 0.88538 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 8.56 71.98 0.62 -1.94 16 2 C 0.10 2.37 0.97 3.87 0.00 2.37 16 3 C 0.07 1.59 4.51 71.98 0.32 1.91 16 4 O -0.58 -11.24 12.67 -148.98 -1.89 -13.13 16 5 C -0.11 -2.77 5.49 31.77 0.17 -2.60 16 6 C 0.09 2.43 4.42 31.98 0.14 2.57 16 7 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 8 O -0.58 -14.72 13.47 -148.98 -2.01 -16.73 16 9 C 0.02 0.71 5.08 86.77 0.44 1.15 16 10 N -0.51 -15.11 4.93 -841.02 -4.15 -19.26 16 11 C 0.11 3.60 4.09 85.56 0.35 3.95 16 12 C -0.20 -8.24 4.66 -19.68 -0.09 -8.33 16 13 C -0.07 -3.02 9.67 22.22 0.21 -2.81 16 14 C -0.24 -12.06 9.80 22.73 0.22 -11.83 16 15 C 0.08 4.47 5.58 -21.29 -0.12 4.35 16 16 C -0.50 -27.38 9.05 23.46 0.21 -27.16 16 17 H 0.07 3.89 7.91 -2.91 -0.02 3.86 16 18 C 0.04 1.89 5.13 85.26 0.44 2.32 16 19 N -0.83 -43.47 10.98 21.83 0.24 -43.23 16 20 Si 0.98 38.39 29.60 68.60 2.03 40.42 16 21 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 22 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 23 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 24 C -0.19 -9.97 8.70 22.73 0.20 -9.77 16 25 C -0.09 -4.10 8.15 22.22 0.18 -3.92 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.44 7.65 -2.39 -0.02 1.42 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 29 H 0.04 0.98 6.56 -2.39 -0.02 0.97 16 30 H 0.06 1.30 6.87 -2.38 -0.02 1.28 16 31 H 0.40 4.21 9.12 -74.06 -0.68 3.53 16 32 H 0.06 1.73 7.85 -2.39 -0.02 1.71 16 33 H 0.09 2.04 7.83 -2.39 -0.02 2.02 16 34 H 0.40 7.13 9.12 -74.06 -0.68 6.46 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.04 1.53 5.68 -2.39 -0.01 1.52 16 37 H 0.04 1.23 5.80 -2.38 -0.01 1.22 16 38 H 0.08 2.47 7.26 -2.39 -0.02 2.46 16 39 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.09 4.44 8.06 -2.91 -0.02 4.41 16 41 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 42 H 0.10 5.37 6.16 -2.91 -0.02 5.35 16 43 H 0.09 3.98 7.09 -2.91 -0.02 3.96 16 Total: -1.00 -62.65 338.70 -2.79 -65.44 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -0.32 Total: 36.21 kcal Atomic # 6 Polarization: -53.04 SS G_CDS: 3.31 Total: -49.73 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -3.91 Total: -62.48 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -3.89 Total: -29.86 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -62.65 -2.79 -65.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602898045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.668 kcal (2) G-P(sol) polarization free energy of solvation -62.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds