Wall clock time and date at job start Tue Mar 31 2020 07:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 110.00768 * 2 1 4 4 O 1.42903 * 109.47049 * 296.63834 * 3 2 1 5 5 C 1.54316 * 109.88981 * 238.88534 * 2 1 3 6 6 C 1.55139 * 103.01739 * 262.87734 * 5 2 1 7 7 H 1.08995 * 110.99338 * 82.43704 * 6 5 2 8 8 O 1.42896 * 110.99215 * 206.25774 * 6 5 2 9 9 C 1.54905 * 101.65330 * 324.34627 * 6 5 2 10 10 N 1.47440 * 109.88939 * 121.11052 * 2 1 3 11 11 C 1.46898 * 111.00574 * 242.66823 * 10 2 1 12 12 C 1.50697 * 109.47473 * 172.47094 * 11 10 2 13 13 C 1.38625 * 119.75107 * 96.26380 * 12 11 10 14 14 C 1.37618 * 120.24813 * 179.97438 * 13 12 11 15 15 C 1.40708 * 119.74574 * 0.02562 * 14 13 12 16 16 C 1.41402 * 120.24480 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00144 * 24.88238 * 16 15 14 18 18 C 1.39947 * 119.99858 * 204.88000 * 16 15 14 19 19 N 1.30825 * 120.00187 * 215.42260 * 18 16 15 20 20 Si 1.86808 * 119.99994 * 35.42537 * 18 16 15 21 21 H 1.48496 * 109.46905 * 266.00522 * 20 18 16 22 22 H 1.48494 * 109.47066 * 26.00663 * 20 18 16 23 23 H 1.48500 * 109.46784 * 146.00687 * 20 18 16 24 24 C 1.40714 * 119.51421 * 0.27159 * 15 14 13 25 25 C 1.37619 * 119.74009 * 359.44824 * 24 15 14 26 26 H 1.08996 * 109.47579 * 298.88844 * 1 2 3 27 27 H 1.09000 * 109.46679 * 58.88962 * 1 2 3 28 28 H 1.08997 * 109.47242 * 178.88181 * 1 2 3 29 29 H 1.08997 * 109.47499 * 56.64340 * 3 2 1 30 30 H 1.08999 * 109.46972 * 176.64363 * 3 2 1 31 31 H 0.96702 * 113.99408 * 179.97438 * 4 3 2 32 32 H 1.09004 * 110.70668 * 144.49898 * 5 2 1 33 33 H 1.08996 * 110.85774 * 21.33272 * 5 2 1 34 34 H 0.96697 * 114.00524 * 173.72282 * 8 6 5 35 35 H 1.08998 * 110.37937 * 278.23904 * 9 6 5 36 36 H 1.09000 * 110.46740 * 155.94773 * 9 6 5 37 37 H 1.09003 * 109.47201 * 52.46627 * 11 10 2 38 38 H 1.09001 * 109.46615 * 292.47246 * 11 10 2 39 39 H 1.08004 * 119.87782 * 359.96181 * 13 12 11 40 40 H 1.08000 * 120.12813 * 180.02562 * 14 13 12 41 41 H 0.97001 * 119.99322 * 5.10379 * 19 18 16 42 42 H 1.07999 * 120.13434 * 179.72668 * 24 15 14 43 43 H 1.08002 * 119.88036 * 180.27794 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0535 1.4377 0.0000 4 8 1.6489 2.0920 -1.2043 5 6 2.0550 -0.7499 -1.2423 6 6 2.3502 -2.1708 -0.6940 7 1 1.4423 -2.7731 -0.6613 8 8 3.3634 -2.8174 -1.4667 9 6 2.8586 -1.8554 0.7348 10 7 2.0316 -0.7164 1.1870 11 6 2.8029 0.1815 2.0571 12 6 3.1405 -0.5309 3.3413 13 6 4.3736 -1.1485 3.4818 14 6 4.6928 -1.8015 4.6504 15 6 3.7617 -1.8413 5.7046 16 6 4.0785 -2.5098 6.9097 17 1 5.1105 -2.6379 7.2010 18 6 3.0546 -3.0054 7.7249 19 7 3.1847 -2.9806 9.0264 20 14 1.5021 -3.7026 6.9545 21 1 0.4691 -2.6389 6.8736 22 1 1.8076 -4.2008 5.5894 23 1 0.9956 -4.8222 7.7883 24 6 2.5107 -1.2164 5.5485 25 6 2.2152 -0.5642 4.3733 26 1 -0.3634 0.4964 0.8997 27 1 -0.3633 0.5310 -0.8799 28 1 -0.3633 -1.0274 -0.0201 29 1 1.6469 1.9725 0.8583 30 1 3.1418 1.4281 0.0602 31 1 1.9463 3.0096 -1.2723 32 1 2.9667 -0.2843 -1.6168 33 1 1.2949 -0.7880 -2.0226 34 1 3.6502 -3.6678 -1.1066 35 1 3.9112 -1.5737 0.7096 36 1 2.7121 -2.7144 1.3897 37 1 2.2109 1.0695 2.2789 38 1 3.7229 0.4752 1.5517 39 1 5.0865 -1.1172 2.6710 40 1 5.6542 -2.2816 4.7578 41 1 3.9565 -2.5522 9.4285 42 1 1.7868 -1.2446 6.3496 43 1 1.2574 -0.0799 4.2528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602898046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:12 Heat of formation + Delta-G solvation = -77.811332 kcal Electronic energy + Delta-G solvation = -23866.350966 eV Core-core repulsion = 20489.820853 eV Total energy + Delta-G solvation = -3376.530113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.21350 -37.73983 -36.93143 -35.76240 -34.00253 -32.31525 -30.71903 -29.62965 -29.58084 -26.99377 -25.92669 -24.69895 -22.97413 -21.48448 -21.16537 -19.89622 -18.84256 -18.17320 -17.58281 -17.36613 -15.75599 -15.44002 -15.14018 -14.76683 -14.44556 -14.10730 -13.93456 -13.75673 -13.68223 -13.12710 -12.98114 -12.71615 -12.46962 -12.25512 -12.22760 -11.93210 -11.65874 -11.38679 -11.17191 -11.10416 -10.92440 -10.81438 -10.41652 -10.33635 -10.22171 -10.00357 -9.96358 -9.86717 -9.40521 -8.93180 -8.14226 -7.69204 -7.61525 -7.38321 -4.50858 2.62161 2.76959 3.21916 3.32730 3.52495 3.74193 4.02007 4.09374 4.32301 4.55628 4.59789 4.75498 4.93062 5.10705 5.15540 5.23867 5.40480 5.44965 5.52753 5.60478 5.68572 5.87974 5.89396 5.95298 6.01415 6.05179 6.08999 6.15534 6.18155 6.22782 6.41016 6.66360 6.88612 7.07043 7.14455 7.22536 7.38236 7.45842 7.48117 7.57464 7.65531 7.81979 7.91662 8.03358 8.41334 8.60615 8.77435 9.85501 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.004200 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.344586 B = 6664.332141 C = 6862.152546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.098 3.902 3 C 0.066 3.934 4 O -0.570 6.570 5 C -0.112 4.112 6 C 0.087 3.913 7 H 0.072 0.928 8 O -0.564 6.564 9 C 0.021 3.979 10 N -0.503 5.503 11 C 0.110 3.890 12 C -0.225 4.225 13 C -0.069 4.069 14 C -0.225 4.225 15 C 0.101 3.899 16 C -0.531 4.531 17 H 0.077 0.923 18 C 0.058 3.942 19 N -0.794 5.794 20 Si 1.060 2.940 21 H -0.272 1.272 22 H -0.265 1.265 23 H -0.285 1.285 24 C -0.247 4.247 25 C -0.047 4.047 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.377 0.623 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.380 0.620 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.029 0.971 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.290 0.710 42 H 0.099 0.901 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.259 4.804 -15.717 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.009 3.991 3 C -0.013 4.013 4 O -0.374 6.374 5 C -0.150 4.150 6 C 0.028 3.972 7 H 0.089 0.911 8 O -0.369 6.369 9 C -0.107 4.107 10 N -0.229 5.229 11 C -0.016 4.016 12 C -0.226 4.226 13 C -0.088 4.088 14 C -0.244 4.244 15 C 0.098 3.902 16 C -0.558 4.558 17 H 0.095 0.905 18 C -0.166 4.166 19 N -0.415 5.415 20 Si 0.884 3.116 21 H -0.198 1.198 22 H -0.190 1.190 23 H -0.211 1.211 24 C -0.266 4.266 25 C -0.066 4.066 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.223 0.777 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.227 0.773 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.380 3.839 -15.446 16.801 hybrid contribution 2.726 1.135 0.007 2.953 sum -2.654 4.974 -15.440 16.437 Atomic orbital electron populations 1.21696 0.92820 1.01911 1.01564 1.21710 0.96812 0.90949 0.89670 1.22855 0.97985 0.93680 0.86762 1.86451 1.80024 1.29834 1.41104 1.22663 1.01812 0.93195 0.97340 1.23044 0.90267 0.93868 0.90036 0.91061 1.86459 1.58480 1.38805 1.53183 1.23669 0.96338 0.95632 0.95109 1.63882 1.36871 1.08472 1.13657 1.20996 0.94585 0.94235 0.91825 1.18767 0.96563 1.11860 0.95429 1.20430 0.95069 0.96974 0.96314 1.20908 1.00765 1.08321 0.94426 1.17651 0.91094 0.89896 0.91537 1.20554 0.95924 1.34806 1.04476 0.90478 1.27260 1.02888 0.92704 0.93735 1.70556 1.28589 1.30129 1.12180 0.83796 0.74184 0.77027 0.76567 1.19818 1.18976 1.21149 1.21029 0.99359 1.07587 0.98611 1.20387 0.96388 0.96896 0.92887 0.92431 0.92118 0.92382 0.92624 0.93427 0.77681 0.90725 0.90322 0.77271 0.92785 0.89625 0.91142 0.95335 0.89757 0.88980 0.89863 0.88258 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.61 37.16 0.32 -1.18 16 2 C 0.10 1.28 0.97 -130.61 -0.13 1.15 16 3 C 0.07 0.77 4.55 37.16 0.17 0.94 16 4 O -0.57 -6.03 12.74 -35.23 -0.45 -6.48 16 5 C -0.11 -1.43 5.36 -24.91 -0.13 -1.57 16 6 C 0.09 1.11 4.42 -24.59 -0.11 1.00 16 7 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 8 O -0.56 -6.95 13.47 -35.23 -0.47 -7.43 16 9 C 0.02 0.30 5.46 -2.30 -0.01 0.29 16 10 N -0.50 -7.60 4.80 -217.17 -1.04 -8.64 16 11 C 0.11 1.77 3.80 -4.98 -0.02 1.75 16 12 C -0.22 -4.48 4.96 -104.33 -0.52 -4.99 16 13 C -0.07 -1.43 9.01 -39.66 -0.36 -1.79 16 14 C -0.22 -5.28 9.80 -38.88 -0.38 -5.66 16 15 C 0.10 2.58 5.13 -106.83 -0.55 2.03 16 16 C -0.53 -14.20 9.28 -37.74 -0.35 -14.55 16 17 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 18 C 0.06 1.49 5.10 -17.34 -0.09 1.40 16 19 N -0.79 -20.89 13.65 55.55 0.76 -20.13 16 20 Si 1.06 23.91 25.89 -169.99 -4.40 19.50 16 21 H -0.27 -5.92 6.61 56.52 0.37 -5.54 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 C -0.25 -5.97 7.69 -38.87 -0.30 -6.27 16 25 C -0.05 -1.01 9.69 -39.66 -0.38 -1.39 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.70 7.78 -51.93 -0.40 0.30 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.64 6.66 -51.93 -0.35 0.29 16 30 H 0.05 0.57 6.65 -51.93 -0.35 0.22 16 31 H 0.38 2.32 9.12 45.56 0.42 2.74 16 32 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 33 H 0.08 0.96 7.84 -51.93 -0.41 0.56 16 34 H 0.38 3.20 9.11 45.56 0.42 3.61 16 35 H 0.05 0.83 7.26 -51.93 -0.38 0.45 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.07 1.07 6.30 -51.93 -0.33 0.74 16 38 H 0.03 0.44 6.55 -51.93 -0.34 0.10 16 39 H 0.08 1.56 7.81 -52.48 -0.41 1.15 16 40 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.29 7.42 8.73 -40.82 -0.36 7.06 16 42 H 0.10 2.42 5.31 -52.49 -0.28 2.14 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -28.83 338.94 -8.29 -37.12 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -4.95 Total: 9.79 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: -2.84 Total: -28.84 kcal Atomic # 7 Polarization: -28.49 SS G_CDS: -0.28 Total: -28.77 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.92 Total: -13.91 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -4.40 Total: 19.50 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.83 -8.29 -37.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602898046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.691 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds