Wall clock time and date at job start Tue Mar 31 2020 07:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 110.00768 * 2 1 4 4 O 1.42903 * 109.47049 * 296.63834 * 3 2 1 5 5 C 1.54316 * 109.88981 * 238.88534 * 2 1 3 6 6 C 1.55139 * 103.01739 * 262.87734 * 5 2 1 7 7 H 1.08995 * 110.99338 * 82.43704 * 6 5 2 8 8 O 1.42896 * 110.99215 * 206.25774 * 6 5 2 9 9 C 1.54905 * 101.65330 * 324.34627 * 6 5 2 10 10 N 1.47440 * 109.88939 * 121.11052 * 2 1 3 11 11 C 1.46898 * 111.00574 * 242.66823 * 10 2 1 12 12 C 1.50697 * 109.47473 * 172.47094 * 11 10 2 13 13 C 1.38625 * 119.75107 * 96.26380 * 12 11 10 14 14 C 1.37618 * 120.24813 * 179.97438 * 13 12 11 15 15 C 1.40708 * 119.74574 * 0.02562 * 14 13 12 16 16 C 1.41402 * 120.24480 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00144 * 24.88238 * 16 15 14 18 18 C 1.39947 * 119.99858 * 204.88000 * 16 15 14 19 19 N 1.30825 * 120.00187 * 215.42260 * 18 16 15 20 20 Si 1.86808 * 119.99994 * 35.42537 * 18 16 15 21 21 H 1.48496 * 109.46905 * 266.00522 * 20 18 16 22 22 H 1.48494 * 109.47066 * 26.00663 * 20 18 16 23 23 H 1.48500 * 109.46784 * 146.00687 * 20 18 16 24 24 C 1.40714 * 119.51421 * 0.27159 * 15 14 13 25 25 C 1.37619 * 119.74009 * 359.44824 * 24 15 14 26 26 H 1.08996 * 109.47579 * 298.88844 * 1 2 3 27 27 H 1.09000 * 109.46679 * 58.88962 * 1 2 3 28 28 H 1.08997 * 109.47242 * 178.88181 * 1 2 3 29 29 H 1.08997 * 109.47499 * 56.64340 * 3 2 1 30 30 H 1.08999 * 109.46972 * 176.64363 * 3 2 1 31 31 H 0.96702 * 113.99408 * 179.97438 * 4 3 2 32 32 H 1.09004 * 110.70668 * 144.49898 * 5 2 1 33 33 H 1.08996 * 110.85774 * 21.33272 * 5 2 1 34 34 H 0.96697 * 114.00524 * 173.72282 * 8 6 5 35 35 H 1.08998 * 110.37937 * 278.23904 * 9 6 5 36 36 H 1.09000 * 110.46740 * 155.94773 * 9 6 5 37 37 H 1.09003 * 109.47201 * 52.46627 * 11 10 2 38 38 H 1.09001 * 109.46615 * 292.47246 * 11 10 2 39 39 H 1.08004 * 119.87782 * 359.96181 * 13 12 11 40 40 H 1.08000 * 120.12813 * 180.02562 * 14 13 12 41 41 H 0.97001 * 119.99322 * 5.10379 * 19 18 16 42 42 H 1.07999 * 120.13434 * 179.72668 * 24 15 14 43 43 H 1.08002 * 119.88036 * 180.27794 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0535 1.4377 0.0000 4 8 1.6489 2.0920 -1.2043 5 6 2.0550 -0.7499 -1.2423 6 6 2.3502 -2.1708 -0.6940 7 1 1.4423 -2.7731 -0.6613 8 8 3.3634 -2.8174 -1.4667 9 6 2.8586 -1.8554 0.7348 10 7 2.0316 -0.7164 1.1870 11 6 2.8029 0.1815 2.0571 12 6 3.1405 -0.5309 3.3413 13 6 4.3736 -1.1485 3.4818 14 6 4.6928 -1.8015 4.6504 15 6 3.7617 -1.8413 5.7046 16 6 4.0785 -2.5098 6.9097 17 1 5.1105 -2.6379 7.2010 18 6 3.0546 -3.0054 7.7249 19 7 3.1847 -2.9806 9.0264 20 14 1.5021 -3.7026 6.9545 21 1 0.4691 -2.6389 6.8736 22 1 1.8076 -4.2008 5.5894 23 1 0.9956 -4.8222 7.7883 24 6 2.5107 -1.2164 5.5485 25 6 2.2152 -0.5642 4.3733 26 1 -0.3634 0.4964 0.8997 27 1 -0.3633 0.5310 -0.8799 28 1 -0.3633 -1.0274 -0.0201 29 1 1.6469 1.9725 0.8583 30 1 3.1418 1.4281 0.0602 31 1 1.9463 3.0096 -1.2723 32 1 2.9667 -0.2843 -1.6168 33 1 1.2949 -0.7880 -2.0226 34 1 3.6502 -3.6678 -1.1066 35 1 3.9112 -1.5737 0.7096 36 1 2.7121 -2.7144 1.3897 37 1 2.2109 1.0695 2.2789 38 1 3.7229 0.4752 1.5517 39 1 5.0865 -1.1172 2.6710 40 1 5.6542 -2.2816 4.7578 41 1 3.9565 -2.5522 9.4285 42 1 1.7868 -1.2446 6.3496 43 1 1.2574 -0.0799 4.2528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602898046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:11 Heat of formation + Delta-G solvation = -100.463899 kcal Electronic energy + Delta-G solvation = -23867.333255 eV Core-core repulsion = 20489.820853 eV Total energy + Delta-G solvation = -3377.512402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.30996 -39.45880 -37.81383 -36.79561 -35.77374 -33.74216 -31.85675 -31.38699 -31.06485 -28.07391 -27.37045 -25.75961 -24.50008 -23.21964 -22.41707 -21.52083 -20.08072 -19.88570 -18.47236 -18.34720 -16.94815 -16.79433 -16.34704 -16.10764 -16.00701 -15.63179 -15.48978 -15.05450 -14.72574 -14.42306 -14.25409 -14.09239 -14.02804 -13.66070 -13.30562 -13.24235 -13.02116 -12.84861 -12.68822 -12.52808 -12.11819 -12.07165 -11.99168 -11.83432 -11.58103 -11.37813 -11.24393 -10.96153 -10.87581 -10.82248 -9.54651 -9.47759 -9.36882 -9.21866 -6.49813 0.83028 0.94667 1.39234 1.54349 1.74860 2.19157 2.44950 2.77016 3.25711 3.38178 3.54530 3.64044 3.79803 3.99797 4.12003 4.14531 4.22367 4.29150 4.31592 4.45559 4.49782 4.50997 4.59520 4.74844 4.85302 4.89521 4.90308 4.97341 5.02102 5.05595 5.11786 5.16481 5.23113 5.44682 5.46069 5.56355 5.77882 5.88095 5.97372 6.14116 6.17082 6.18815 6.49191 6.71129 6.78911 6.86334 6.88041 7.87128 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.004200 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.344586 B = 6664.332141 C = 6862.152546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.097 3.903 3 C 0.070 3.930 4 O -0.579 6.579 5 C -0.108 4.108 6 C 0.096 3.904 7 H 0.079 0.921 8 O -0.574 6.574 9 C 0.021 3.979 10 N -0.513 5.513 11 C 0.113 3.887 12 C -0.199 4.199 13 C -0.066 4.066 14 C -0.240 4.240 15 C 0.080 3.920 16 C -0.571 4.571 17 H 0.047 0.953 18 C 0.031 3.969 19 N -0.819 5.819 20 Si 1.091 2.909 21 H -0.258 1.258 22 H -0.269 1.269 23 H -0.270 1.270 24 C -0.257 4.257 25 C -0.053 4.053 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.397 0.603 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.396 0.604 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.041 0.959 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.283 0.717 42 H 0.093 0.907 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.715 6.048 -18.784 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.007 3.993 3 C -0.008 4.008 4 O -0.386 6.386 5 C -0.147 4.147 6 C 0.036 3.964 7 H 0.097 0.903 8 O -0.382 6.382 9 C -0.107 4.107 10 N -0.239 5.239 11 C -0.013 4.013 12 C -0.200 4.200 13 C -0.085 4.085 14 C -0.259 4.259 15 C 0.077 3.923 16 C -0.599 4.599 17 H 0.066 0.934 18 C -0.187 4.187 19 N -0.440 5.440 20 Si 0.910 3.090 21 H -0.183 1.183 22 H -0.193 1.193 23 H -0.196 1.196 24 C -0.277 4.277 25 C -0.071 4.071 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.246 0.754 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.246 0.754 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.059 0.941 39 H 0.130 0.870 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.821 5.094 -18.514 20.378 hybrid contribution 3.240 0.886 0.682 3.428 sum -3.580 5.980 -17.832 19.146 Atomic orbital electron populations 1.21662 0.92204 1.01933 1.01803 1.21763 0.97162 0.91731 0.88603 1.22707 0.97766 0.92940 0.87434 1.86403 1.80180 1.31536 1.40472 1.22632 1.01608 0.93027 0.97395 1.22955 0.90510 0.94161 0.88771 0.90293 1.86429 1.58420 1.39992 1.53354 1.23631 0.95999 0.94998 0.96099 1.63746 1.36551 1.08648 1.14924 1.20975 0.95846 0.94348 0.90141 1.19273 0.95276 1.08922 0.96514 1.20713 0.96047 0.95842 0.95873 1.21078 1.00585 1.09109 0.95176 1.17820 0.92401 0.90375 0.91670 1.20493 0.94849 1.38147 1.06422 0.93442 1.28184 1.04740 0.92202 0.93594 1.70615 1.28756 1.32032 1.12600 0.83411 0.72225 0.77423 0.75899 1.18285 1.19344 1.19596 1.21118 0.98756 1.08114 0.99664 1.20708 0.97859 0.96358 0.92202 0.92690 0.91323 0.92534 0.92129 0.93570 0.75367 0.91526 0.89657 0.75415 0.93394 0.91165 0.89440 0.94088 0.86988 0.89254 0.90678 0.88883 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.61 71.98 0.62 -1.88 16 2 C 0.10 2.17 0.97 3.87 0.00 2.17 16 3 C 0.07 1.37 4.55 71.98 0.33 1.70 16 4 O -0.58 -10.08 12.74 -148.98 -1.90 -11.98 16 5 C -0.11 -2.43 5.36 31.77 0.17 -2.26 16 6 C 0.10 2.17 4.42 31.98 0.14 2.31 16 7 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 8 O -0.57 -12.63 13.47 -148.98 -2.01 -14.64 16 9 C 0.02 0.56 5.46 86.77 0.47 1.03 16 10 N -0.51 -13.73 4.80 -841.01 -4.04 -17.77 16 11 C 0.11 3.20 3.80 85.56 0.33 3.53 16 12 C -0.20 -7.31 4.96 -19.68 -0.10 -7.41 16 13 C -0.07 -2.61 9.01 22.22 0.20 -2.41 16 14 C -0.24 -11.29 9.80 22.73 0.22 -11.07 16 15 C 0.08 4.14 5.13 -21.29 -0.11 4.03 16 16 C -0.57 -32.14 9.28 23.46 0.22 -31.92 16 17 H 0.05 2.84 8.06 -2.91 -0.02 2.81 16 18 C 0.03 1.67 5.10 85.26 0.43 2.11 16 19 N -0.82 -44.84 13.65 21.83 0.30 -44.54 16 20 Si 1.09 48.60 25.89 68.60 1.78 50.38 16 21 H -0.26 -10.78 6.61 99.48 0.66 -10.12 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 C -0.26 -12.30 7.69 22.73 0.17 -12.12 16 25 C -0.05 -2.14 9.69 22.22 0.22 -1.93 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.35 7.78 -2.39 -0.02 1.33 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.13 6.66 -2.39 -0.02 1.11 16 30 H 0.05 0.92 6.65 -2.39 -0.02 0.90 16 31 H 0.40 3.41 9.12 -74.06 -0.68 2.73 16 32 H 0.07 1.61 7.85 -2.38 -0.02 1.60 16 33 H 0.08 1.81 7.84 -2.39 -0.02 1.79 16 34 H 0.40 5.71 9.11 -74.06 -0.67 5.03 16 35 H 0.05 1.33 7.26 -2.39 -0.02 1.31 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.09 2.24 6.30 -2.39 -0.02 2.22 16 38 H 0.04 1.09 6.55 -2.39 -0.02 1.08 16 39 H 0.11 3.80 7.81 -2.91 -0.02 3.78 16 40 H 0.09 4.14 8.06 -2.91 -0.02 4.12 16 41 H 0.28 15.34 8.73 -92.71 -0.81 14.53 16 42 H 0.09 4.51 5.31 -2.91 -0.02 4.49 16 43 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -62.62 338.94 -2.96 -65.58 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -0.41 Total: 27.09 kcal Atomic # 6 Polarization: -57.45 SS G_CDS: 3.32 Total: -54.13 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -3.74 Total: -62.31 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -3.90 Total: -26.62 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.78 Total: 50.38 kcal Total: -62.62 -2.96 -65.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602898046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.886 kcal (2) G-P(sol) polarization free energy of solvation -62.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds