Wall clock time and date at job start Tue Mar 31 2020 07:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 110.06951 * 2 1 4 4 O 1.42898 * 109.47119 * 301.21072 * 3 2 1 5 5 C 1.53998 * 109.91838 * 238.79794 * 2 1 3 6 6 C 1.54595 * 105.13791 * 241.87453 * 5 2 1 7 7 H 1.09004 * 110.72142 * 263.59397 * 6 5 2 8 8 O 1.42901 * 110.87726 * 140.38425 * 6 5 2 9 9 C 1.54934 * 102.92650 * 21.95264 * 6 5 2 10 10 N 1.47908 * 109.91986 * 121.20918 * 2 1 3 11 11 C 1.46906 * 110.99378 * 333.50739 * 10 2 1 12 12 C 1.50697 * 109.46708 * 187.26898 * 11 10 2 13 13 C 1.38637 * 119.75283 * 269.72820 * 12 11 10 14 14 C 1.37615 * 120.24621 * 179.72114 * 13 12 11 15 15 C 1.40715 * 119.74899 * 0.52938 * 14 13 12 16 16 C 1.41397 * 120.24850 * 179.72493 * 15 14 13 17 17 H 1.07991 * 120.00524 * 155.30814 * 16 15 14 18 18 C 1.39950 * 119.99570 * 335.30976 * 16 15 14 19 19 N 1.30824 * 119.99983 * 342.23381 * 18 16 15 20 20 Si 1.86801 * 120.00011 * 162.23061 * 18 16 15 21 21 H 1.48502 * 109.46932 * 94.66208 * 20 18 16 22 22 H 1.48498 * 109.47292 * 214.66410 * 20 18 16 23 23 H 1.48506 * 109.47016 * 334.66587 * 20 18 16 24 24 C 1.40711 * 119.51102 * 359.74372 * 15 14 13 25 25 C 1.37624 * 119.74449 * 0.02562 * 24 15 14 26 26 H 1.09000 * 109.47384 * 298.79301 * 1 2 3 27 27 H 1.09002 * 109.47531 * 58.79466 * 1 2 3 28 28 H 1.09003 * 109.47091 * 178.79540 * 1 2 3 29 29 H 1.09004 * 109.46971 * 61.20515 * 3 2 1 30 30 H 1.08995 * 109.47793 * 181.20382 * 3 2 1 31 31 H 0.96702 * 113.99853 * 179.97438 * 4 3 2 32 32 H 1.08995 * 110.30872 * 122.95513 * 5 2 1 33 33 H 1.08998 * 110.30526 * 0.78676 * 5 2 1 34 34 H 0.96701 * 114.00140 * 182.54932 * 8 6 5 35 35 H 1.08999 * 110.66148 * 81.01924 * 9 6 5 36 36 H 1.08997 * 110.66943 * 203.98558 * 9 6 5 37 37 H 1.08998 * 109.47429 * 307.26989 * 11 10 2 38 38 H 1.08996 * 109.46851 * 67.27484 * 11 10 2 39 39 H 1.08001 * 119.87148 * 359.97438 * 13 12 11 40 40 H 1.08003 * 120.12191 * 180.27508 * 14 13 12 41 41 H 0.97003 * 119.99580 * 180.02562 * 19 18 16 42 42 H 1.08000 * 120.13069 * 180.02562 * 24 15 14 43 43 H 1.07999 * 119.87403 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0550 1.4371 0.0000 4 8 1.5627 2.1241 -1.1523 5 6 2.0546 -0.7501 -1.2384 6 6 2.8535 -1.9483 -0.6763 7 1 3.9171 -1.7145 -0.6290 8 8 2.6300 -3.1221 -1.4600 9 6 2.2660 -2.1193 0.7471 10 7 2.0339 -0.7206 1.1893 11 6 1.0591 -0.6704 2.2873 12 6 1.6745 -1.2554 3.5323 13 6 1.5442 -2.6108 3.7926 14 6 2.1069 -3.1568 4.9235 15 6 2.8071 -2.3317 5.8230 16 6 3.3845 -2.8805 6.9912 17 1 4.2234 -2.3889 7.4612 18 6 2.8688 -4.0608 7.5385 19 7 1.6720 -4.4689 7.2032 20 14 3.8895 -5.0534 8.7478 21 1 3.5307 -4.6637 10.1351 22 1 3.6176 -6.5004 8.5541 23 1 5.3315 -4.7852 8.5155 24 6 2.9281 -0.9563 5.5515 25 6 2.3613 -0.4328 4.4119 26 1 -0.3634 0.4950 0.9006 27 1 -0.3634 0.5324 -0.8790 28 1 -0.3633 -1.0275 -0.0216 29 1 1.7147 1.9482 0.9006 30 1 3.1446 1.4259 -0.0216 31 1 1.8560 3.0432 -1.2173 32 1 2.7062 -0.1025 -1.8250 33 1 1.2224 -1.1027 -1.8477 34 1 3.0788 -3.9103 -1.1247 35 1 1.3275 -2.6725 0.7119 36 1 2.9811 -2.6186 1.4010 37 1 0.7754 0.3653 2.4743 38 1 0.1746 -1.2458 2.0144 39 1 1.0025 -3.2413 3.1030 40 1 2.0080 -4.2138 5.1221 41 1 1.3145 -5.2868 7.5828 42 1 3.4637 -0.3139 6.2348 43 1 2.4526 0.6226 4.2017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602898048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:15 Heat of formation + Delta-G solvation = -76.401192 kcal Electronic energy + Delta-G solvation = -23679.415196 eV Core-core repulsion = 20302.946231 eV Total energy + Delta-G solvation = -3376.468965 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.06691 -37.54992 -36.83799 -35.81905 -33.86759 -31.87938 -30.67967 -29.44296 -29.17281 -26.68270 -26.28172 -24.72614 -23.22408 -21.38561 -20.69673 -19.85840 -18.72008 -17.43014 -17.38208 -17.29269 -15.81346 -15.38477 -15.02366 -14.68239 -14.55024 -14.28628 -13.97092 -13.53249 -13.09630 -12.98056 -12.83906 -12.58725 -12.42731 -12.21843 -11.97695 -11.92398 -11.54287 -11.35384 -11.22624 -10.96825 -10.88971 -10.70671 -10.57355 -10.41911 -10.35700 -9.96804 -9.85441 -9.57176 -9.39113 -9.12915 -8.16138 -7.44962 -7.29930 -6.77809 -4.35879 2.71647 3.05220 3.07396 3.09197 3.15768 3.74429 3.91719 4.26003 4.51403 4.67160 4.73851 4.87838 5.03724 5.16892 5.34158 5.36368 5.58370 5.64562 5.66236 5.70702 5.74423 5.87508 5.91011 6.02999 6.06424 6.10602 6.19166 6.28173 6.32312 6.38189 6.39642 6.92538 7.05866 7.11516 7.29247 7.33743 7.37519 7.56006 7.60949 7.64395 7.87546 8.04700 8.12958 8.29646 8.63156 8.88844 8.97046 10.16819 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.003697 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.982223 B = 7572.803689 C = 8134.751655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 C 0.097 3.903 4 O -0.574 6.574 5 C -0.105 4.105 6 C 0.093 3.907 7 H 0.069 0.931 8 O -0.566 6.566 9 C 0.016 3.984 10 N -0.496 5.496 11 C 0.113 3.887 12 C -0.208 4.208 13 C -0.093 4.093 14 C -0.166 4.166 15 C 0.113 3.887 16 C -0.464 4.464 17 H 0.077 0.923 18 C 0.077 3.923 19 N -0.794 5.794 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.228 4.228 25 C -0.070 4.070 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.377 0.623 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.379 0.621 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.033 0.967 39 H 0.081 0.919 40 H 0.116 0.884 41 H 0.280 0.720 42 H 0.090 0.910 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.435 5.659 -12.349 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.003 3.997 3 C 0.019 3.981 4 O -0.379 6.379 5 C -0.143 4.143 6 C 0.034 3.966 7 H 0.087 0.913 8 O -0.372 6.372 9 C -0.112 4.112 10 N -0.222 5.222 11 C -0.013 4.013 12 C -0.210 4.210 13 C -0.112 4.112 14 C -0.185 4.185 15 C 0.110 3.890 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.141 4.141 19 N -0.419 5.419 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.248 4.248 25 C -0.089 4.089 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.224 0.776 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.227 0.773 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.133 0.867 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.081 5.556 -12.565 13.738 hybrid contribution 0.178 -0.713 0.974 1.220 sum 0.259 4.843 -11.591 12.565 Atomic orbital electron populations 1.22355 0.95429 1.01790 1.02722 1.21657 0.93889 0.93339 0.90865 1.21977 0.97392 0.91618 0.87119 1.86411 1.76493 1.28797 1.46197 1.22369 1.00293 0.94855 0.96815 1.22810 0.98551 0.85554 0.89680 0.91271 1.86465 1.76248 1.19902 1.54537 1.23805 1.00864 0.90958 0.95572 1.64700 1.43038 1.10048 1.04408 1.20947 0.91711 0.99443 0.89243 1.18834 1.10444 0.94157 0.97575 1.20497 0.99852 0.93685 0.97131 1.21263 1.03440 0.99812 0.93986 1.17611 0.89242 0.90460 0.91652 1.19598 1.14575 1.06468 1.08690 0.90514 1.25902 0.94246 0.97120 0.96817 1.69832 1.13756 1.20773 1.37529 0.86347 0.81356 0.78973 0.80337 1.19591 1.20053 1.18425 1.20962 1.09160 0.95106 0.99568 1.20307 0.97322 0.96825 0.94406 0.91910 0.91555 0.92738 0.93443 0.92897 0.77606 0.90422 0.90438 0.77327 0.93129 0.89184 0.91653 0.94919 0.90056 0.86651 0.90932 0.89164 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 6.93 37.15 0.26 -1.93 16 2 C 0.09 1.25 0.69 -130.53 -0.09 1.16 16 3 C 0.10 1.17 6.07 37.16 0.23 1.40 16 4 O -0.57 -6.16 12.54 -35.23 -0.44 -6.60 16 5 C -0.11 -1.39 5.76 -25.37 -0.15 -1.54 16 6 C 0.09 1.24 4.43 -24.87 -0.11 1.13 16 7 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 8 O -0.57 -7.18 13.41 -35.23 -0.47 -7.66 16 9 C 0.02 0.25 5.25 -1.90 -0.01 0.24 16 10 N -0.50 -7.78 4.88 -216.42 -1.06 -8.84 16 11 C 0.11 1.96 3.71 -4.97 -0.02 1.94 16 12 C -0.21 -4.40 5.12 -104.33 -0.53 -4.93 16 13 C -0.09 -2.10 8.70 -39.66 -0.35 -2.44 16 14 C -0.17 -4.23 8.70 -38.87 -0.34 -4.56 16 15 C 0.11 2.98 5.57 -106.83 -0.60 2.38 16 16 C -0.46 -12.24 9.05 -37.74 -0.34 -12.58 16 17 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 18 C 0.08 1.91 5.14 -17.34 -0.09 1.83 16 19 N -0.79 -20.38 10.97 55.55 0.61 -19.77 16 20 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 24 C -0.23 -5.56 9.80 -38.87 -0.38 -5.95 16 25 C -0.07 -1.54 9.67 -39.66 -0.38 -1.92 16 26 H 0.06 0.83 6.39 -51.93 -0.33 0.50 16 27 H 0.07 0.85 7.66 -51.93 -0.40 0.45 16 28 H 0.05 0.75 7.76 -51.93 -0.40 0.34 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.38 2.32 9.12 45.56 0.42 2.73 16 32 H 0.08 0.98 7.54 -51.93 -0.39 0.59 16 33 H 0.08 1.07 7.62 -51.93 -0.40 0.67 16 34 H 0.38 3.34 9.12 45.56 0.42 3.75 16 35 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 36 H 0.09 1.48 7.81 -51.93 -0.41 1.08 16 37 H 0.07 1.08 7.25 -51.93 -0.38 0.71 16 38 H 0.03 0.56 6.59 -51.93 -0.34 0.22 16 39 H 0.08 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.12 3.06 6.18 -52.48 -0.32 2.73 16 41 H 0.28 6.53 8.30 -40.82 -0.34 6.20 16 42 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 43 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 342.97 15.07 5.17 5.17 Total: -1.00 -28.98 342.97 -9.15 -38.13 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -2.90 Total: -25.79 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: -0.45 Total: -28.61 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.91 Total: -14.26 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.98 -9.15 -38.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602898048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.272 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds