Wall clock time and date at job start Tue Mar 31 2020 07:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 110.06951 * 2 1 4 4 O 1.42898 * 109.47119 * 301.21072 * 3 2 1 5 5 C 1.53998 * 109.91838 * 238.79794 * 2 1 3 6 6 C 1.54595 * 105.13791 * 241.87453 * 5 2 1 7 7 H 1.09004 * 110.72142 * 263.59397 * 6 5 2 8 8 O 1.42901 * 110.87726 * 140.38425 * 6 5 2 9 9 C 1.54934 * 102.92650 * 21.95264 * 6 5 2 10 10 N 1.47908 * 109.91986 * 121.20918 * 2 1 3 11 11 C 1.46906 * 110.99378 * 333.50739 * 10 2 1 12 12 C 1.50697 * 109.46708 * 187.26898 * 11 10 2 13 13 C 1.38637 * 119.75283 * 269.72820 * 12 11 10 14 14 C 1.37615 * 120.24621 * 179.72114 * 13 12 11 15 15 C 1.40715 * 119.74899 * 0.52938 * 14 13 12 16 16 C 1.41397 * 120.24850 * 179.72493 * 15 14 13 17 17 H 1.07991 * 120.00524 * 155.30814 * 16 15 14 18 18 C 1.39950 * 119.99570 * 335.30976 * 16 15 14 19 19 N 1.30824 * 119.99983 * 342.23381 * 18 16 15 20 20 Si 1.86801 * 120.00011 * 162.23061 * 18 16 15 21 21 H 1.48502 * 109.46932 * 94.66208 * 20 18 16 22 22 H 1.48498 * 109.47292 * 214.66410 * 20 18 16 23 23 H 1.48506 * 109.47016 * 334.66587 * 20 18 16 24 24 C 1.40711 * 119.51102 * 359.74372 * 15 14 13 25 25 C 1.37624 * 119.74449 * 0.02562 * 24 15 14 26 26 H 1.09000 * 109.47384 * 298.79301 * 1 2 3 27 27 H 1.09002 * 109.47531 * 58.79466 * 1 2 3 28 28 H 1.09003 * 109.47091 * 178.79540 * 1 2 3 29 29 H 1.09004 * 109.46971 * 61.20515 * 3 2 1 30 30 H 1.08995 * 109.47793 * 181.20382 * 3 2 1 31 31 H 0.96702 * 113.99853 * 179.97438 * 4 3 2 32 32 H 1.08995 * 110.30872 * 122.95513 * 5 2 1 33 33 H 1.08998 * 110.30526 * 0.78676 * 5 2 1 34 34 H 0.96701 * 114.00140 * 182.54932 * 8 6 5 35 35 H 1.08999 * 110.66148 * 81.01924 * 9 6 5 36 36 H 1.08997 * 110.66943 * 203.98558 * 9 6 5 37 37 H 1.08998 * 109.47429 * 307.26989 * 11 10 2 38 38 H 1.08996 * 109.46851 * 67.27484 * 11 10 2 39 39 H 1.08001 * 119.87148 * 359.97438 * 13 12 11 40 40 H 1.08003 * 120.12191 * 180.27508 * 14 13 12 41 41 H 0.97003 * 119.99580 * 180.02562 * 19 18 16 42 42 H 1.08000 * 120.13069 * 180.02562 * 24 15 14 43 43 H 1.07999 * 119.87403 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0550 1.4371 0.0000 4 8 1.5627 2.1241 -1.1523 5 6 2.0546 -0.7501 -1.2384 6 6 2.8535 -1.9483 -0.6763 7 1 3.9171 -1.7145 -0.6290 8 8 2.6300 -3.1221 -1.4600 9 6 2.2660 -2.1193 0.7471 10 7 2.0339 -0.7206 1.1893 11 6 1.0591 -0.6704 2.2873 12 6 1.6745 -1.2554 3.5323 13 6 1.5442 -2.6108 3.7926 14 6 2.1069 -3.1568 4.9235 15 6 2.8071 -2.3317 5.8230 16 6 3.3845 -2.8805 6.9912 17 1 4.2234 -2.3889 7.4612 18 6 2.8688 -4.0608 7.5385 19 7 1.6720 -4.4689 7.2032 20 14 3.8895 -5.0534 8.7478 21 1 3.5307 -4.6637 10.1351 22 1 3.6176 -6.5004 8.5541 23 1 5.3315 -4.7852 8.5155 24 6 2.9281 -0.9563 5.5515 25 6 2.3613 -0.4328 4.4119 26 1 -0.3634 0.4950 0.9006 27 1 -0.3634 0.5324 -0.8790 28 1 -0.3633 -1.0275 -0.0216 29 1 1.7147 1.9482 0.9006 30 1 3.1446 1.4259 -0.0216 31 1 1.8560 3.0432 -1.2173 32 1 2.7062 -0.1025 -1.8250 33 1 1.2224 -1.1027 -1.8477 34 1 3.0788 -3.9103 -1.1247 35 1 1.3275 -2.6725 0.7119 36 1 2.9811 -2.6186 1.4010 37 1 0.7754 0.3653 2.4743 38 1 0.1746 -1.2458 2.0144 39 1 1.0025 -3.2413 3.1030 40 1 2.0080 -4.2138 5.1221 41 1 1.3145 -5.2868 7.5828 42 1 3.4637 -0.3139 6.2348 43 1 2.4526 0.6226 4.2017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602898048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:14 Heat of formation + Delta-G solvation = -98.113998 kcal Electronic energy + Delta-G solvation = -23680.356734 eV Core-core repulsion = 20302.946231 eV Total energy + Delta-G solvation = -3377.410503 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.22963 -39.30087 -37.75625 -36.91319 -35.62132 -33.34046 -31.80298 -31.20419 -30.84525 -27.95546 -27.63077 -25.97818 -24.69951 -22.99039 -22.21328 -21.46403 -19.86705 -19.20259 -18.42103 -18.27774 -17.17852 -16.92218 -16.38491 -15.87326 -15.74101 -15.68467 -15.47022 -14.95507 -14.62051 -14.22961 -14.07767 -14.03655 -13.80062 -13.57748 -13.43614 -13.19846 -13.04203 -12.80181 -12.75602 -12.49919 -12.26100 -12.16131 -11.99989 -11.72564 -11.56170 -11.32482 -11.25562 -11.00311 -10.90726 -10.79271 -9.46708 -9.29252 -9.14790 -8.63121 -6.31757 0.95277 1.18151 1.37784 1.47930 1.53781 2.20881 2.57084 2.82879 3.33524 3.52024 3.64462 3.74141 3.86319 4.05287 4.10366 4.28903 4.31478 4.33376 4.36458 4.53740 4.61823 4.62719 4.65137 4.68777 4.76958 4.86048 4.91583 5.00068 5.04449 5.09922 5.13440 5.17557 5.24769 5.38589 5.49483 5.72708 5.90397 5.96717 6.11608 6.15247 6.29504 6.41881 6.72470 6.80299 6.95810 6.96334 7.06271 8.33956 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.003697 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.982223 B = 7572.803689 C = 8134.751655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.090 3.910 3 C 0.103 3.897 4 O -0.582 6.582 5 C -0.102 4.102 6 C 0.102 3.898 7 H 0.078 0.922 8 O -0.575 6.575 9 C 0.017 3.983 10 N -0.501 5.501 11 C 0.121 3.879 12 C -0.194 4.194 13 C -0.093 4.093 14 C -0.188 4.188 15 C 0.080 3.920 16 C -0.504 4.504 17 H 0.073 0.927 18 C 0.037 3.963 19 N -0.827 5.827 20 Si 0.979 3.021 21 H -0.263 1.263 22 H -0.266 1.266 23 H -0.259 1.259 24 C -0.244 4.244 25 C -0.072 4.072 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.398 0.602 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.395 0.605 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.287 0.713 42 H 0.094 0.906 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 6.599 -13.596 15.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.001 3.999 3 C 0.025 3.975 4 O -0.390 6.390 5 C -0.140 4.140 6 C 0.043 3.957 7 H 0.096 0.904 8 O -0.383 6.383 9 C -0.111 4.111 10 N -0.227 5.227 11 C -0.006 4.006 12 C -0.195 4.195 13 C -0.112 4.112 14 C -0.208 4.208 15 C 0.078 3.922 16 C -0.533 4.533 17 H 0.091 0.909 18 C -0.178 4.178 19 N -0.453 5.453 20 Si 0.800 3.200 21 H -0.188 1.188 22 H -0.190 1.190 23 H -0.183 1.183 24 C -0.263 4.263 25 C -0.090 4.090 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.248 0.752 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.245 0.755 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.267 6.516 -13.829 15.290 hybrid contribution 0.060 -0.908 1.197 1.504 sum 0.328 5.607 -12.632 13.825 Atomic orbital electron populations 1.22306 0.95166 1.01351 1.03025 1.21741 0.94125 0.94230 0.89822 1.21814 0.97421 0.90634 0.87646 1.86361 1.76649 1.30534 1.45463 1.22354 1.00205 0.94860 0.96580 1.22715 0.98821 0.85912 0.88299 0.90437 1.86434 1.76748 1.20557 1.54560 1.23758 1.00134 0.90587 0.96666 1.64597 1.42575 1.10475 1.05067 1.20841 0.91694 0.99917 0.88169 1.19241 1.08383 0.93369 0.98535 1.20679 0.99327 0.94804 0.96381 1.21210 1.05126 0.99092 0.95363 1.17942 0.90315 0.91617 0.92307 1.19835 1.15460 1.08326 1.09727 0.90890 1.26720 0.95059 0.97536 0.98467 1.69884 1.15086 1.21455 1.38891 0.85243 0.79363 0.77486 0.77919 1.18751 1.19042 1.18308 1.21168 1.09807 0.94608 1.00753 1.20622 0.96470 0.98386 0.93537 0.91881 0.90929 0.93557 0.93413 0.92619 0.75176 0.89497 0.91001 0.75466 0.93948 0.90944 0.90199 0.94690 0.88597 0.88539 0.90253 0.88778 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 6.93 71.98 0.50 -3.38 16 2 C 0.09 2.22 0.69 3.67 0.00 2.23 16 3 C 0.10 2.18 6.07 71.98 0.44 2.62 16 4 O -0.58 -10.62 12.54 -148.98 -1.87 -12.49 16 5 C -0.10 -2.45 5.76 31.47 0.18 -2.27 16 6 C 0.10 2.51 4.43 31.80 0.14 2.65 16 7 H 0.08 1.79 8.14 -2.38 -0.02 1.78 16 8 O -0.58 -13.56 13.41 -148.98 -2.00 -15.56 16 9 C 0.02 0.50 5.25 86.65 0.46 0.95 16 10 N -0.50 -14.72 4.88 -838.63 -4.09 -18.81 16 11 C 0.12 3.93 3.71 85.56 0.32 4.25 16 12 C -0.19 -7.97 5.12 -19.67 -0.10 -8.07 16 13 C -0.09 -4.24 8.70 22.22 0.19 -4.05 16 14 C -0.19 -9.94 8.70 22.73 0.20 -9.74 16 15 C 0.08 4.39 5.57 -21.29 -0.12 4.27 16 16 C -0.50 -27.59 9.05 23.46 0.21 -27.38 16 17 H 0.07 3.87 7.91 -2.92 -0.02 3.85 16 18 C 0.04 1.87 5.14 85.26 0.44 2.31 16 19 N -0.83 -43.74 10.97 21.83 0.24 -43.50 16 20 Si 0.98 38.52 29.59 68.60 2.03 40.55 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 24 C -0.24 -12.03 9.80 22.73 0.22 -11.81 16 25 C -0.07 -3.08 9.67 22.22 0.21 -2.87 16 26 H 0.06 1.51 6.39 -2.39 -0.02 1.50 16 27 H 0.07 1.67 7.66 -2.39 -0.02 1.65 16 28 H 0.05 1.18 7.76 -2.39 -0.02 1.16 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.40 3.57 9.12 -74.06 -0.68 2.89 16 32 H 0.09 1.94 7.54 -2.39 -0.02 1.92 16 33 H 0.07 1.82 7.62 -2.39 -0.02 1.80 16 34 H 0.40 6.33 9.12 -74.06 -0.68 5.65 16 35 H 0.04 1.30 7.85 -2.39 -0.02 1.28 16 36 H 0.07 2.36 7.81 -2.39 -0.02 2.34 16 37 H 0.08 2.40 7.25 -2.39 -0.02 2.39 16 38 H 0.03 1.14 6.59 -2.39 -0.02 1.12 16 39 H 0.10 4.00 8.06 -2.91 -0.02 3.98 16 40 H 0.10 5.37 6.18 -2.91 -0.02 5.35 16 41 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 42 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 43 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -62.84 342.97 -2.72 -65.56 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: -0.33 Total: 34.54 kcal Atomic # 6 Polarization: -53.59 SS G_CDS: 3.29 Total: -50.30 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -3.85 Total: -62.31 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -3.87 Total: -28.04 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -62.84 -2.72 -65.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602898048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.549 kcal (2) G-P(sol) polarization free energy of solvation -62.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds