Wall clock time and date at job start Tue Mar 31 2020 07:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38173 * 120.02669 * 2 1 4 4 C 1.38246 * 120.05506 * 179.97438 * 3 2 1 5 5 C 1.38292 * 120.10952 * 0.02562 * 4 3 2 6 6 C 1.38121 * 120.05886 * 359.97438 * 5 4 3 7 7 C 1.38714 * 120.03265 * 179.97438 * 2 1 3 8 8 O 1.35901 * 120.04787 * 359.97438 * 7 2 1 9 9 C 1.42907 * 116.99383 * 180.02562 * 8 7 2 10 10 C 1.50700 * 109.46720 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00193 * 354.92022 * 10 9 8 12 12 N 1.34774 * 119.99983 * 174.91693 * 10 9 8 13 13 C 1.46497 * 120.00294 * 185.39215 * 12 10 9 14 14 C 1.50700 * 109.46962 * 90.00492 * 13 12 10 15 15 H 1.07999 * 119.99904 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00041 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99964 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00004 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46824 * 59.99626 * 18 16 14 20 20 H 1.48499 * 109.46991 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46882 * 300.00063 * 18 16 14 22 22 C 1.46503 * 120.00136 * 5.40016 * 12 10 9 23 23 C 1.52994 * 109.47657 * 124.24037 * 22 12 10 24 24 C 1.52997 * 109.47145 * 244.24552 * 22 12 10 25 25 H 1.09000 * 109.47552 * 270.02144 * 1 2 3 26 26 H 1.09001 * 109.47265 * 30.02231 * 1 2 3 27 27 H 1.09000 * 109.47082 * 150.02078 * 1 2 3 28 28 H 1.07994 * 119.96990 * 0.02562 * 3 2 1 29 29 H 1.07992 * 119.94754 * 180.02562 * 4 3 2 30 30 H 1.08004 * 119.97162 * 180.27861 * 5 4 3 31 31 H 1.08003 * 120.02895 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.47040 * 299.99522 * 9 8 7 33 33 H 1.08991 * 109.47024 * 60.00346 * 9 8 7 34 34 H 1.09000 * 109.47637 * 210.00428 * 13 12 10 35 35 H 1.08996 * 109.47248 * 330.00349 * 13 12 10 36 36 H 0.97005 * 119.99576 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.46675 * 4.23967 * 22 12 10 38 38 H 1.09000 * 109.46901 * 55.64238 * 23 22 12 39 39 H 1.08993 * 109.47661 * 175.63779 * 23 22 12 40 40 H 1.08999 * 109.47150 * 295.64403 * 23 22 12 41 41 H 1.08998 * 109.47260 * 64.58124 * 24 22 12 42 42 H 1.09000 * 109.47181 * 184.58379 * 24 22 12 43 43 H 1.09005 * 109.47104 * 304.58310 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 0.0005 5 6 4.2752 0.0010 0.0005 6 6 3.5887 -1.1975 0.0005 7 6 2.2012 -1.2009 0.0005 8 8 1.5234 -2.3788 0.0016 9 6 2.3035 -3.5761 0.0027 10 6 1.3872 -4.7726 0.0031 11 8 0.1879 -4.6179 0.0955 12 7 1.9005 -6.0145 -0.0993 13 6 1.0067 -7.1691 -0.2179 14 6 0.7245 -7.4384 -1.6735 15 1 1.1663 -6.8119 -2.4342 16 6 -0.0987 -8.4841 -2.0342 17 7 -0.6372 -9.2467 -1.1079 18 14 -0.4492 -8.8175 -3.8386 19 1 0.8250 -9.1035 -4.5456 20 1 -1.3551 -9.9879 -3.9588 21 1 -1.0954 -7.6262 -4.4456 22 6 3.3525 -6.2100 -0.0919 23 6 3.7301 -7.1854 1.0246 24 6 3.7971 -6.7808 -1.4399 25 1 -0.3634 0.0004 1.0276 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6583 2.1315 0.0004 29 1 4.1195 2.1330 0.0010 30 1 5.3552 0.0041 0.0055 31 1 4.1314 -2.1313 0.0010 32 1 2.9323 -3.6009 -0.8874 33 1 2.9322 -3.5993 0.8926 34 1 1.4812 -8.0433 0.2279 35 1 0.0713 -6.9593 0.3008 36 1 -1.2161 -9.9826 -1.3618 37 1 3.8469 -5.2536 0.0786 38 1 3.1761 -8.1155 0.8973 39 1 4.7996 -7.3909 0.9812 40 1 3.4836 -6.7450 1.9907 41 1 3.6020 -6.0510 -2.2257 42 1 4.8639 -7.0024 -1.4066 43 1 3.2423 -7.6957 -1.6479 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603897335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:25 Heat of formation + Delta-G solvation = -52.497710 kcal Electronic energy + Delta-G solvation = -23462.597984 eV Core-core repulsion = 20087.165552 eV Total energy + Delta-G solvation = -3375.432432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37383 -39.11857 -37.26925 -35.93304 -32.93375 -32.79560 -30.93037 -30.26794 -29.02825 -26.92680 -26.79655 -26.40551 -23.13968 -22.10836 -21.60651 -21.21038 -18.35536 -18.08360 -16.66126 -16.53718 -16.03918 -15.89344 -15.64032 -14.99801 -14.38019 -14.31137 -14.16929 -13.61789 -13.44234 -13.26757 -13.15600 -12.65159 -12.55406 -12.31940 -12.25413 -11.96758 -11.75625 -11.55471 -11.37635 -11.27050 -11.08188 -10.91942 -10.91400 -10.87519 -10.61403 -10.41551 -10.04995 -9.59609 -8.96020 -8.90864 -8.43660 -8.13242 -7.73332 -6.05812 -4.09690 1.23844 1.38608 2.92159 3.27885 3.30774 3.35713 3.39644 3.68608 4.02550 4.43367 4.67890 4.72819 4.90035 4.96290 5.03680 5.18703 5.21418 5.22239 5.28629 5.32978 5.49391 5.52894 5.56119 5.64238 5.77862 5.82432 5.96417 6.08161 6.18390 6.24377 6.27193 6.28658 6.40007 6.47658 6.53067 6.72176 6.90706 7.03595 7.39754 7.43187 7.52365 7.90679 8.21517 8.32173 8.85538 9.00435 9.54478 11.02275 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.003972 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.561169 B = 7046.822571 C = 7710.095324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.115 4.115 3 C -0.085 4.085 4 C -0.161 4.161 5 C -0.087 4.087 6 C -0.209 4.209 7 C 0.133 3.867 8 O -0.283 6.283 9 C 0.041 3.959 10 C 0.509 3.491 11 O -0.519 6.519 12 N -0.589 5.589 13 C 0.246 3.754 14 C -0.525 4.525 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.132 3.868 23 C -0.163 4.163 24 C -0.163 4.163 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.256 15.232 3.357 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.116 4.116 3 C -0.103 4.103 4 C -0.179 4.179 5 C -0.105 4.105 6 C -0.228 4.228 7 C 0.087 3.913 8 O -0.195 6.195 9 C -0.038 4.038 10 C 0.294 3.706 11 O -0.394 6.394 12 N -0.323 5.323 13 C 0.128 3.872 14 C -0.564 4.564 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C 0.028 3.972 23 C -0.221 4.221 24 C -0.221 4.221 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.252 15.078 3.438 19.125 hybrid contribution 0.247 -0.357 -1.064 1.149 sum 11.499 14.721 2.375 18.830 Atomic orbital electron populations 1.20643 0.90301 1.03057 1.02492 1.19326 0.96811 0.90224 1.05194 1.20872 0.94110 0.96666 0.98670 1.20996 0.94211 0.97955 1.04759 1.20893 0.99629 0.91869 0.98114 1.21274 0.92973 0.99572 1.08962 1.18980 0.90462 0.85955 0.95928 1.86195 1.34234 1.11251 1.87829 1.22702 0.94408 0.83952 1.02735 1.19677 0.88639 0.83661 0.78639 1.90711 1.15212 1.85094 1.48387 1.48260 1.06438 1.06905 1.70713 1.19308 0.89166 0.81388 0.97365 1.21405 1.29227 1.13662 0.92063 0.92337 1.24921 0.95460 0.96001 0.97628 1.69920 1.32114 1.18577 1.32668 0.86599 0.78218 0.77761 0.85104 1.20246 1.21194 1.20195 1.21022 0.81553 0.98412 0.96252 1.22157 1.01119 1.00999 0.97787 1.22215 1.00027 1.03771 0.96052 0.91326 0.91893 0.90473 0.85555 0.86137 0.85976 0.85462 0.89668 0.89807 0.94343 0.93791 0.92657 0.91292 0.90805 0.92079 0.92864 0.93022 0.93017 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.79 36.00 0.35 -1.01 16 2 C -0.11 -1.53 5.89 -104.47 -0.62 -2.15 16 3 C -0.09 -0.92 9.70 -39.60 -0.38 -1.31 16 4 C -0.16 -1.60 10.04 -39.56 -0.40 -2.00 16 5 C -0.09 -0.90 10.04 -39.60 -0.40 -1.30 16 6 C -0.21 -2.53 9.04 -39.44 -0.36 -2.89 16 7 C 0.13 1.94 6.66 -39.22 -0.26 1.68 16 8 O -0.28 -4.93 8.72 -39.29 -0.34 -5.28 16 9 C 0.04 0.65 3.55 36.01 0.13 0.77 16 10 C 0.51 10.77 7.73 -10.99 -0.08 10.69 16 11 O -0.52 -13.52 16.06 -14.30 -0.23 -13.75 16 12 N -0.59 -12.12 2.39 -167.48 -0.40 -12.52 16 13 C 0.25 6.24 4.73 -5.19 -0.02 6.21 16 14 C -0.52 -14.37 7.71 -34.44 -0.27 -14.63 16 15 H 0.06 1.60 7.59 -52.49 -0.40 1.20 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 18 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.13 2.05 3.12 -67.93 -0.21 1.84 16 23 C -0.16 -2.29 9.19 37.15 0.34 -1.95 16 24 C -0.16 -2.54 8.74 37.16 0.32 -2.22 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.08 1.15 7.53 -51.93 -0.39 0.76 16 28 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 30 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 31 H 0.13 1.32 6.30 -52.48 -0.33 0.99 16 32 H 0.09 1.17 7.37 -51.93 -0.38 0.79 16 33 H 0.08 1.08 7.24 -51.93 -0.38 0.70 16 34 H 0.04 0.97 6.13 -51.93 -0.32 0.66 16 35 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.07 0.86 5.85 -51.93 -0.30 0.55 16 38 H 0.07 1.21 6.34 -51.93 -0.33 0.88 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.67 6.60 -51.93 -0.34 1.32 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -32.94 352.31 -8.39 -41.33 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.49 Total: 0.33 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.95 Total: -6.61 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.34 Total: -37.90 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.57 Total: -19.03 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.94 -8.39 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603897335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.166 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds