Wall clock time and date at job start Tue Mar 31 2020 07:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38173 * 120.02669 * 2 1 4 4 C 1.38246 * 120.05506 * 179.97438 * 3 2 1 5 5 C 1.38292 * 120.10952 * 0.02562 * 4 3 2 6 6 C 1.38121 * 120.05886 * 359.97438 * 5 4 3 7 7 C 1.38714 * 120.03265 * 179.97438 * 2 1 3 8 8 O 1.35901 * 120.04787 * 359.97438 * 7 2 1 9 9 C 1.42907 * 116.99383 * 180.02562 * 8 7 2 10 10 C 1.50700 * 109.46720 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00193 * 354.92022 * 10 9 8 12 12 N 1.34774 * 119.99983 * 174.91693 * 10 9 8 13 13 C 1.46497 * 120.00294 * 185.39215 * 12 10 9 14 14 C 1.50700 * 109.46962 * 90.00492 * 13 12 10 15 15 H 1.07999 * 119.99904 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00041 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99964 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00004 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46824 * 59.99626 * 18 16 14 20 20 H 1.48499 * 109.46991 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46882 * 300.00063 * 18 16 14 22 22 C 1.46503 * 120.00136 * 5.40016 * 12 10 9 23 23 C 1.52994 * 109.47657 * 124.24037 * 22 12 10 24 24 C 1.52997 * 109.47145 * 244.24552 * 22 12 10 25 25 H 1.09000 * 109.47552 * 270.02144 * 1 2 3 26 26 H 1.09001 * 109.47265 * 30.02231 * 1 2 3 27 27 H 1.09000 * 109.47082 * 150.02078 * 1 2 3 28 28 H 1.07994 * 119.96990 * 0.02562 * 3 2 1 29 29 H 1.07992 * 119.94754 * 180.02562 * 4 3 2 30 30 H 1.08004 * 119.97162 * 180.27861 * 5 4 3 31 31 H 1.08003 * 120.02895 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.47040 * 299.99522 * 9 8 7 33 33 H 1.08991 * 109.47024 * 60.00346 * 9 8 7 34 34 H 1.09000 * 109.47637 * 210.00428 * 13 12 10 35 35 H 1.08996 * 109.47248 * 330.00349 * 13 12 10 36 36 H 0.97005 * 119.99576 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.46675 * 4.23967 * 22 12 10 38 38 H 1.09000 * 109.46901 * 55.64238 * 23 22 12 39 39 H 1.08993 * 109.47661 * 175.63779 * 23 22 12 40 40 H 1.08999 * 109.47150 * 295.64403 * 23 22 12 41 41 H 1.08998 * 109.47260 * 64.58124 * 24 22 12 42 42 H 1.09000 * 109.47181 * 184.58379 * 24 22 12 43 43 H 1.09005 * 109.47104 * 304.58310 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 0.0005 5 6 4.2752 0.0010 0.0005 6 6 3.5887 -1.1975 0.0005 7 6 2.2012 -1.2009 0.0005 8 8 1.5234 -2.3788 0.0016 9 6 2.3035 -3.5761 0.0027 10 6 1.3872 -4.7726 0.0031 11 8 0.1879 -4.6179 0.0955 12 7 1.9005 -6.0145 -0.0993 13 6 1.0067 -7.1691 -0.2179 14 6 0.7245 -7.4384 -1.6735 15 1 1.1663 -6.8119 -2.4342 16 6 -0.0987 -8.4841 -2.0342 17 7 -0.6372 -9.2467 -1.1079 18 14 -0.4492 -8.8175 -3.8386 19 1 0.8250 -9.1035 -4.5456 20 1 -1.3551 -9.9879 -3.9588 21 1 -1.0954 -7.6262 -4.4456 22 6 3.3525 -6.2100 -0.0919 23 6 3.7301 -7.1854 1.0246 24 6 3.7971 -6.7808 -1.4399 25 1 -0.3634 0.0004 1.0276 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6583 2.1315 0.0004 29 1 4.1195 2.1330 0.0010 30 1 5.3552 0.0041 0.0055 31 1 4.1314 -2.1313 0.0010 32 1 2.9323 -3.6009 -0.8874 33 1 2.9322 -3.5993 0.8926 34 1 1.4812 -8.0433 0.2279 35 1 0.0713 -6.9593 0.3008 36 1 -1.2161 -9.9826 -1.3618 37 1 3.8469 -5.2536 0.0786 38 1 3.1761 -8.1155 0.8973 39 1 4.7996 -7.3909 0.9812 40 1 3.4836 -6.7450 1.9907 41 1 3.6020 -6.0510 -2.2257 42 1 4.8639 -7.0024 -1.4066 43 1 3.2423 -7.6957 -1.6479 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603897335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:24 Heat of formation + Delta-G solvation = -71.595475 kcal Electronic energy + Delta-G solvation = -23463.426126 eV Core-core repulsion = 20087.165552 eV Total energy + Delta-G solvation = -3376.260573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52929 -40.54121 -38.35814 -37.52698 -34.96137 -33.73974 -32.48493 -31.33174 -30.46780 -28.46789 -27.96651 -27.56318 -24.94624 -23.31136 -22.68034 -22.36125 -19.80769 -19.21531 -18.63605 -18.03467 -17.35125 -17.17645 -16.70156 -16.47456 -15.95681 -15.65021 -15.25260 -14.88772 -14.83298 -14.56150 -14.19683 -13.99074 -13.89055 -13.77976 -13.35933 -13.24915 -13.17407 -12.97732 -12.85725 -12.73874 -12.52279 -12.25835 -12.22148 -12.12633 -12.04842 -11.78103 -11.70557 -11.53741 -10.65398 -10.61411 -9.74446 -9.50724 -9.07722 -8.21156 -6.33204 0.40495 0.50826 1.35339 1.39635 1.45760 1.57270 1.75806 2.37070 2.67345 2.84003 3.08982 3.45127 3.78649 3.91830 3.97318 4.00494 4.04889 4.23759 4.27567 4.37066 4.43882 4.44126 4.66695 4.76825 4.76964 4.81840 4.87328 4.97352 5.00556 5.03997 5.10560 5.20845 5.31502 5.43230 5.43974 5.54071 5.57652 5.61888 5.62729 5.81909 5.91727 6.08340 6.41102 6.67816 6.75502 7.24900 7.40276 8.86312 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.003972 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.561169 B = 7046.822571 C = 7710.095324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.140 4.140 3 C -0.087 4.087 4 C -0.156 4.156 5 C -0.087 4.087 6 C -0.213 4.213 7 C 0.097 3.903 8 O -0.320 6.320 9 C 0.055 3.945 10 C 0.496 3.504 11 O -0.585 6.585 12 N -0.590 5.590 13 C 0.263 3.737 14 C -0.532 4.532 15 H 0.056 0.944 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.961 3.039 19 H -0.258 1.258 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.122 3.878 23 C -0.158 4.158 24 C -0.158 4.158 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.146 0.854 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.034 0.966 35 H -0.008 1.008 36 H 0.266 0.734 37 H 0.115 0.885 38 H 0.040 0.960 39 H 0.100 0.900 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.093 0.907 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.028 17.345 2.633 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.141 4.141 3 C -0.104 4.104 4 C -0.174 4.174 5 C -0.104 4.104 6 C -0.231 4.231 7 C 0.052 3.948 8 O -0.233 6.233 9 C -0.023 4.023 10 C 0.284 3.716 11 O -0.465 6.465 12 N -0.322 5.322 13 C 0.142 3.858 14 C -0.570 4.570 15 H 0.074 0.926 16 C -0.191 4.191 17 N -0.569 5.569 18 Si 0.786 3.214 19 H -0.183 1.183 20 H -0.205 1.205 21 H -0.207 1.207 22 C 0.020 3.980 23 C -0.216 4.216 24 C -0.216 4.216 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.168 0.832 29 H 0.170 0.830 30 H 0.172 0.828 31 H 0.163 0.837 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.052 0.948 35 H 0.010 0.990 36 H 0.075 0.925 37 H 0.132 0.868 38 H 0.059 0.941 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.095 17.198 2.715 23.043 hybrid contribution -0.862 -0.914 -0.786 1.482 sum 14.233 16.284 1.928 21.713 Atomic orbital electron populations 1.20589 0.90916 1.02429 1.02249 1.19592 0.96894 0.91117 1.06471 1.21188 0.94947 0.96529 0.97769 1.21449 0.93905 0.99352 1.02682 1.21326 1.01282 0.91201 0.96638 1.21538 0.91827 1.01319 1.08437 1.19321 0.91845 0.85073 0.98515 1.86142 1.35872 1.12384 1.88911 1.22582 0.92731 0.81406 1.05536 1.20734 0.88720 0.85155 0.76997 1.90670 1.18375 1.86201 1.51283 1.48276 1.08342 1.05679 1.69949 1.18730 0.88137 0.83090 0.95846 1.21650 1.29084 1.13459 0.92843 0.92592 1.25797 0.95277 0.95887 1.02109 1.70046 1.32866 1.19182 1.34801 0.85569 0.78727 0.77363 0.79778 1.18271 1.20527 1.20680 1.21507 0.78332 1.01211 0.96952 1.22134 1.03085 0.98951 0.97420 1.22157 1.02018 1.01636 0.95784 0.91472 0.89573 0.93913 0.83206 0.83009 0.82804 0.83656 0.87015 0.86176 0.94774 0.99034 0.92540 0.86751 0.94093 0.88141 0.92329 0.93396 0.88861 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.75 9.79 71.23 0.70 -2.05 16 2 C -0.14 -3.64 5.89 -19.77 -0.12 -3.76 16 3 C -0.09 -1.65 9.70 22.26 0.22 -1.43 16 4 C -0.16 -2.47 10.04 22.28 0.22 -2.24 16 5 C -0.09 -1.42 10.04 22.25 0.22 -1.20 16 6 C -0.21 -4.50 9.04 22.36 0.20 -4.29 16 7 C 0.10 2.76 6.66 22.51 0.15 2.91 16 8 O -0.32 -11.32 8.72 -73.44 -0.64 -11.96 16 9 C 0.06 1.69 3.55 71.24 0.25 1.94 16 10 C 0.50 21.65 7.73 87.66 0.68 22.33 16 11 O -0.59 -32.69 16.06 15.96 0.26 -32.43 16 12 N -0.59 -24.80 2.39 -802.17 -1.92 -26.71 16 13 C 0.26 14.11 4.73 85.63 0.41 14.52 16 14 C -0.53 -30.29 7.71 25.60 0.20 -30.10 16 15 H 0.06 3.14 7.59 -2.91 -0.02 3.12 16 16 C 0.01 0.47 5.46 84.66 0.46 0.93 16 17 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 18 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 19 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 22 C 0.12 3.56 3.12 44.99 0.14 3.70 16 23 C -0.16 -4.16 9.19 71.98 0.66 -3.50 16 24 C -0.16 -4.62 8.74 71.98 0.63 -3.99 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 27 H 0.04 1.38 7.53 -2.39 -0.02 1.36 16 28 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 29 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 30 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.15 2.39 6.30 -2.91 -0.02 2.37 16 32 H 0.11 2.77 7.37 -2.39 -0.02 2.75 16 33 H 0.12 2.73 7.24 -2.39 -0.02 2.71 16 34 H 0.03 1.85 6.13 -2.39 -0.01 1.83 16 35 H -0.01 -0.54 7.35 -2.39 -0.02 -0.56 16 36 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 37 H 0.11 2.34 5.85 -2.39 -0.01 2.32 16 38 H 0.04 1.34 6.34 -2.39 -0.02 1.33 16 39 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.05 1.79 6.60 -2.38 -0.02 1.78 16 Total: -1.00 -79.26 352.31 6.03 -73.23 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.99 Total: 13.11 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.02 Total: -6.25 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -1.63 Total: -82.90 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.38 Total: -44.39 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -79.26 6.03 -73.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603897335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.638 kcal (2) G-P(sol) polarization free energy of solvation -79.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds