Wall clock time and date at job start Tue Mar 31 2020 07:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38269 * 119.97261 * 2 1 4 4 C 1.38261 * 120.11217 * 180.02562 * 3 2 1 5 5 C 1.50691 * 119.97530 * 179.97438 * 4 3 2 6 6 C 1.38146 * 120.05532 * 359.97438 * 4 3 2 7 7 C 1.38732 * 119.94666 * 0.02562 * 6 4 3 8 8 O 1.35901 * 120.05935 * 179.97438 * 7 6 4 9 9 C 1.42904 * 117.00069 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.46970 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00235 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99900 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99912 * 359.97438 * 12 10 9 14 14 C 1.46495 * 120.00002 * 179.97438 * 12 10 9 15 15 H 1.09002 * 109.47308 * 359.97438 * 14 12 10 16 16 C 1.53001 * 109.47398 * 119.99746 * 14 12 10 17 17 C 1.50702 * 109.47171 * 239.99670 * 14 12 10 18 18 H 1.08001 * 120.00089 * 325.05166 * 17 14 12 19 19 C 1.37880 * 119.99796 * 145.04858 * 17 14 12 20 20 N 1.31514 * 119.99543 * 176.46253 * 19 17 14 21 21 Si 1.86794 * 120.00028 * 356.46680 * 19 17 14 22 22 H 1.48499 * 109.47255 * 274.92138 * 21 19 17 23 23 H 1.48497 * 109.47373 * 34.92801 * 21 19 17 24 24 H 1.48507 * 109.46963 * 154.92420 * 21 19 17 25 25 C 1.38150 * 119.97164 * 180.23565 * 2 1 3 26 26 H 1.09002 * 109.47364 * 89.99972 * 1 2 3 27 27 H 1.08996 * 109.47340 * 209.99983 * 1 2 3 28 28 H 1.09004 * 109.46853 * 329.99806 * 1 2 3 29 29 H 1.07999 * 119.94115 * 359.97438 * 3 2 1 30 30 H 1.09000 * 109.47633 * 269.97803 * 5 4 3 31 31 H 1.09002 * 109.47061 * 29.97938 * 5 4 3 32 32 H 1.09004 * 109.47701 * 149.97356 * 5 4 3 33 33 H 1.07999 * 120.02843 * 179.97438 * 6 4 3 34 34 H 1.08999 * 109.46839 * 59.99833 * 9 8 7 35 35 H 1.09002 * 109.47282 * 300.00157 * 9 8 7 36 36 H 1.09003 * 109.47307 * 270.00158 * 13 12 10 37 37 H 1.09006 * 109.47299 * 30.00251 * 13 12 10 38 38 H 1.09005 * 109.47170 * 150.00291 * 13 12 10 39 39 H 1.08997 * 109.47748 * 185.54369 * 16 14 12 40 40 H 1.09001 * 109.47150 * 305.54548 * 16 14 12 41 41 H 1.09004 * 109.47201 * 65.54154 * 16 14 12 42 42 H 0.97005 * 119.99553 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.02377 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.3301 2.5083 -0.0011 6 6 4.2752 0.0071 -0.0005 7 6 3.5845 -1.1960 -0.0005 8 8 4.2657 -2.3720 -0.0011 9 6 3.4891 -3.5716 -0.0005 10 6 4.4089 -4.7654 -0.0005 11 8 5.6110 -4.6047 -0.0015 12 7 3.8955 -6.0116 -0.0006 13 6 2.4435 -6.2056 0.0001 14 6 4.7896 -7.1721 -0.0012 15 1 5.8255 -6.8327 -0.0021 16 6 4.5302 -8.0165 1.2480 17 6 4.5328 -8.0034 -1.2317 18 1 3.5309 -8.0899 -1.6255 19 6 5.5770 -8.6535 -1.8547 20 7 5.3432 -9.4346 -2.8866 21 14 7.3235 -8.4249 -1.2329 22 1 7.9099 -7.2039 -1.8418 23 1 7.3082 -8.2826 0.2451 24 1 8.1411 -9.6065 -1.6080 25 6 2.1972 -1.1967 -0.0049 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6564 2.1323 -0.0004 30 1 4.5109 2.8231 -1.0289 31 1 3.7389 3.2665 0.5125 32 1 5.2829 2.3810 0.5128 33 1 5.3552 0.0103 -0.0014 34 1 2.8597 -3.5973 -0.8899 35 1 2.8610 -3.5974 0.8900 36 1 2.0837 -6.2539 1.0279 37 1 1.9651 -5.3715 -0.5134 38 1 2.2009 -7.1358 -0.5138 39 1 5.2601 -8.8244 1.2986 40 1 4.6199 -7.3898 2.1353 41 1 3.5256 -8.4369 1.2002 42 1 6.0779 -9.8916 -3.3251 43 1 1.6571 -2.1320 -0.0092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609143211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:02 Heat of formation + Delta-G solvation = -54.623377 kcal Electronic energy + Delta-G solvation = -22985.942609 eV Core-core repulsion = 19610.418001 eV Total energy + Delta-G solvation = -3375.524608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.40981 -39.17468 -37.60062 -35.43900 -33.72052 -32.80163 -31.30921 -30.58536 -28.11394 -27.38300 -26.65977 -26.22166 -25.28104 -22.10004 -21.41797 -20.53318 -18.47088 -17.80420 -17.22048 -16.39998 -16.26067 -16.13166 -15.62595 -15.26590 -14.53132 -14.16830 -13.95054 -13.80184 -13.42782 -13.38397 -13.14841 -12.75957 -12.65210 -12.56202 -12.43198 -12.34967 -12.03133 -11.91080 -11.78091 -11.59110 -11.41297 -11.10120 -10.96959 -10.79181 -10.71772 -10.46711 -9.81897 -9.35034 -9.08640 -8.75526 -8.65303 -8.20599 -7.78339 -6.20941 -4.24003 1.18992 1.36006 2.86006 3.13578 3.30972 3.37428 3.44902 3.60669 3.98158 4.35931 4.55134 4.61121 4.86727 4.89202 5.06778 5.08543 5.15757 5.16040 5.19615 5.21369 5.36381 5.42411 5.43491 5.54575 5.58318 5.65508 5.74806 5.85321 6.01413 6.19757 6.23080 6.27053 6.35300 6.37539 6.48369 6.52707 6.68747 6.87355 7.00256 7.34573 7.44517 7.57138 8.02740 8.41615 8.77890 8.81966 9.41148 10.90679 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024199 B = 0.003430 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.774455 B = 8161.339287 C = 8757.756658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.044 4.044 3 C -0.165 4.165 4 C -0.045 4.045 5 C -0.114 4.114 6 C -0.159 4.159 7 C 0.143 3.857 8 O -0.288 6.288 9 C 0.044 3.956 10 C 0.506 3.494 11 O -0.533 6.533 12 N -0.585 5.585 13 C 0.078 3.922 14 C 0.224 3.776 15 H 0.065 0.935 16 C -0.146 4.146 17 C -0.527 4.527 18 H 0.079 0.921 19 C 0.081 3.919 20 N -0.890 5.890 21 Si 0.874 3.126 22 H -0.270 1.270 23 H -0.263 1.263 24 H -0.287 1.287 25 C -0.219 4.219 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.027 0.973 41 H 0.050 0.950 42 H 0.267 0.733 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.954 19.130 7.171 22.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.044 4.044 3 C -0.183 4.183 4 C -0.045 4.045 5 C -0.170 4.170 6 C -0.177 4.177 7 C 0.097 3.903 8 O -0.199 6.199 9 C -0.035 4.035 10 C 0.292 3.708 11 O -0.410 6.410 12 N -0.318 5.318 13 C -0.066 4.066 14 C 0.124 3.876 15 H 0.083 0.917 16 C -0.205 4.205 17 C -0.565 4.565 18 H 0.097 0.903 19 C -0.124 4.124 20 N -0.527 5.527 21 Si 0.701 3.299 22 H -0.195 1.195 23 H -0.188 1.188 24 H -0.213 1.213 25 C -0.238 4.238 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.012 19.011 7.029 22.182 hybrid contribution 0.513 -0.178 0.103 0.552 sum -8.500 18.832 7.132 21.858 Atomic orbital electron populations 1.20813 0.91037 1.02821 1.02502 1.19663 0.95897 0.92430 0.96453 1.20757 0.93380 0.97408 1.06766 1.19651 0.93606 0.94493 0.96799 1.20797 1.00033 0.93659 1.02542 1.20297 1.00464 0.89174 1.07801 1.19074 0.90490 0.86066 0.94647 1.86195 1.34434 1.11410 1.87906 1.22654 0.94256 0.83510 1.03092 1.19866 0.88809 0.83883 0.78281 1.90686 1.15205 1.85320 1.49830 1.48298 1.07292 1.05484 1.70738 1.21707 0.80931 1.03335 1.00600 1.19343 0.91274 0.82109 0.94874 0.91731 1.22215 1.01618 0.99695 0.96988 1.21103 0.96808 1.28713 1.09925 0.90278 1.24955 0.99043 0.94232 0.94138 1.69883 1.32645 1.29096 1.21054 0.86899 0.84730 0.78025 0.80260 1.19510 1.18754 1.21282 1.21136 0.92891 0.99012 1.10714 0.90927 0.91420 0.91442 0.86156 0.90904 0.91418 0.91277 0.85127 0.89279 0.89558 0.93471 0.92681 0.89480 0.92468 0.95441 0.93055 0.92291 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.04 -0.47 5.88 -104.64 -0.62 -1.08 16 3 C -0.16 -1.69 9.35 -39.56 -0.37 -2.06 16 4 C -0.05 -0.50 5.88 -104.65 -0.62 -1.11 16 5 C -0.11 -0.90 10.01 36.00 0.36 -0.54 16 6 C -0.16 -2.11 9.64 -39.43 -0.38 -2.49 16 7 C 0.14 2.09 6.69 -39.22 -0.26 1.83 16 8 O -0.29 -5.00 9.67 -39.34 -0.38 -5.38 16 9 C 0.04 0.68 3.77 36.00 0.14 0.81 16 10 C 0.51 10.53 7.75 -10.99 -0.09 10.45 16 11 O -0.53 -13.52 15.83 -14.35 -0.23 -13.75 16 12 N -0.58 -11.97 2.75 -175.26 -0.48 -12.46 16 13 C 0.08 1.20 9.40 59.85 0.56 1.76 16 14 C 0.22 5.36 2.27 -69.08 -0.16 5.20 16 15 H 0.06 1.71 4.11 -51.93 -0.21 1.50 16 16 C -0.15 -3.04 9.09 37.16 0.34 -2.70 16 17 C -0.53 -14.31 8.72 -34.44 -0.30 -14.61 16 18 H 0.08 2.24 6.82 -52.49 -0.36 1.88 16 19 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 20 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 21 Si 0.87 22.20 26.91 -169.99 -4.57 17.63 16 22 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.26 -6.43 6.73 56.52 0.38 -6.05 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 C -0.22 -2.67 8.69 -39.43 -0.34 -3.01 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.09 1.20 6.91 -51.93 -0.36 0.84 16 35 H 0.09 1.08 7.64 -51.93 -0.40 0.68 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.68 6.44 -51.93 -0.33 0.34 16 38 H 0.09 1.46 6.56 -51.93 -0.34 1.12 16 39 H 0.06 1.20 7.97 -51.93 -0.41 0.79 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.98 7.86 -51.93 -0.41 0.57 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.13 1.34 6.30 -52.49 -0.33 1.01 16 LS Contribution 352.63 15.07 5.31 5.31 Total: -1.00 -33.83 352.63 -7.57 -41.40 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.53 Total: -1.09 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.47 Total: -5.87 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.29 Total: -38.25 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.61 Total: -19.13 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.57 Total: 17.63 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.83 -7.57 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609143211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.227 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds