Wall clock time and date at job start Tue Mar 31 2020 07:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38269 * 119.97261 * 2 1 4 4 C 1.38261 * 120.11217 * 180.02562 * 3 2 1 5 5 C 1.50691 * 119.97530 * 179.97438 * 4 3 2 6 6 C 1.38146 * 120.05532 * 359.97438 * 4 3 2 7 7 C 1.38732 * 119.94666 * 0.02562 * 6 4 3 8 8 O 1.35901 * 120.05935 * 179.97438 * 7 6 4 9 9 C 1.42904 * 117.00069 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.46970 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00235 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99900 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99912 * 359.97438 * 12 10 9 14 14 C 1.46495 * 120.00002 * 179.97438 * 12 10 9 15 15 H 1.09002 * 109.47308 * 359.97438 * 14 12 10 16 16 C 1.53001 * 109.47398 * 119.99746 * 14 12 10 17 17 C 1.50702 * 109.47171 * 239.99670 * 14 12 10 18 18 H 1.08001 * 120.00089 * 325.05166 * 17 14 12 19 19 C 1.37880 * 119.99796 * 145.04858 * 17 14 12 20 20 N 1.31514 * 119.99543 * 176.46253 * 19 17 14 21 21 Si 1.86794 * 120.00028 * 356.46680 * 19 17 14 22 22 H 1.48499 * 109.47255 * 274.92138 * 21 19 17 23 23 H 1.48497 * 109.47373 * 34.92801 * 21 19 17 24 24 H 1.48507 * 109.46963 * 154.92420 * 21 19 17 25 25 C 1.38150 * 119.97164 * 180.23565 * 2 1 3 26 26 H 1.09002 * 109.47364 * 89.99972 * 1 2 3 27 27 H 1.08996 * 109.47340 * 209.99983 * 1 2 3 28 28 H 1.09004 * 109.46853 * 329.99806 * 1 2 3 29 29 H 1.07999 * 119.94115 * 359.97438 * 3 2 1 30 30 H 1.09000 * 109.47633 * 269.97803 * 5 4 3 31 31 H 1.09002 * 109.47061 * 29.97938 * 5 4 3 32 32 H 1.09004 * 109.47701 * 149.97356 * 5 4 3 33 33 H 1.07999 * 120.02843 * 179.97438 * 6 4 3 34 34 H 1.08999 * 109.46839 * 59.99833 * 9 8 7 35 35 H 1.09002 * 109.47282 * 300.00157 * 9 8 7 36 36 H 1.09003 * 109.47307 * 270.00158 * 13 12 10 37 37 H 1.09006 * 109.47299 * 30.00251 * 13 12 10 38 38 H 1.09005 * 109.47170 * 150.00291 * 13 12 10 39 39 H 1.08997 * 109.47748 * 185.54369 * 16 14 12 40 40 H 1.09001 * 109.47150 * 305.54548 * 16 14 12 41 41 H 1.09004 * 109.47201 * 65.54154 * 16 14 12 42 42 H 0.97005 * 119.99553 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.02377 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.3301 2.5083 -0.0011 6 6 4.2752 0.0071 -0.0005 7 6 3.5845 -1.1960 -0.0005 8 8 4.2657 -2.3720 -0.0011 9 6 3.4891 -3.5716 -0.0005 10 6 4.4089 -4.7654 -0.0005 11 8 5.6110 -4.6047 -0.0015 12 7 3.8955 -6.0116 -0.0006 13 6 2.4435 -6.2056 0.0001 14 6 4.7896 -7.1721 -0.0012 15 1 5.8255 -6.8327 -0.0021 16 6 4.5302 -8.0165 1.2480 17 6 4.5328 -8.0034 -1.2317 18 1 3.5309 -8.0899 -1.6255 19 6 5.5770 -8.6535 -1.8547 20 7 5.3432 -9.4346 -2.8866 21 14 7.3235 -8.4249 -1.2329 22 1 7.9099 -7.2039 -1.8418 23 1 7.3082 -8.2826 0.2451 24 1 8.1411 -9.6065 -1.6080 25 6 2.1972 -1.1967 -0.0049 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6564 2.1323 -0.0004 30 1 4.5109 2.8231 -1.0289 31 1 3.7389 3.2665 0.5125 32 1 5.2829 2.3810 0.5128 33 1 5.3552 0.0103 -0.0014 34 1 2.8597 -3.5973 -0.8899 35 1 2.8610 -3.5974 0.8900 36 1 2.0837 -6.2539 1.0279 37 1 1.9651 -5.3715 -0.5134 38 1 2.2009 -7.1358 -0.5138 39 1 5.2601 -8.8244 1.2986 40 1 4.6199 -7.3898 2.1353 41 1 3.5256 -8.4369 1.2002 42 1 6.0779 -9.8916 -3.3251 43 1 1.6571 -2.1320 -0.0092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609143211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:01 Heat of formation + Delta-G solvation = -74.869238 kcal Electronic energy + Delta-G solvation = -22986.820536 eV Core-core repulsion = 19610.418001 eV Total energy + Delta-G solvation = -3376.402534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.53166 -40.57650 -38.70377 -37.17562 -34.80042 -34.45181 -32.73082 -31.87520 -29.29210 -28.07243 -27.72416 -27.44880 -27.25633 -23.38284 -22.57574 -21.61363 -20.04361 -19.32487 -18.79773 -17.71745 -17.55779 -17.35918 -16.87720 -16.65215 -16.04587 -15.66250 -14.98467 -14.72276 -14.70544 -14.47506 -14.22759 -14.07590 -13.96772 -13.93754 -13.63963 -13.35401 -13.29289 -13.14268 -12.95632 -12.86376 -12.65942 -12.63792 -12.34258 -12.32407 -11.84659 -11.82293 -11.67438 -11.31198 -10.84198 -10.74669 -9.58631 -9.44587 -9.14614 -8.40486 -6.44217 0.34002 0.46320 1.23765 1.31242 1.38918 1.54808 1.63569 2.24671 2.61866 2.74275 3.02553 3.47475 3.79317 3.88957 3.91897 4.03804 4.15873 4.31501 4.38844 4.41108 4.45328 4.48501 4.64855 4.69146 4.71820 4.80288 4.82232 4.84707 4.88729 4.96179 4.98454 5.12467 5.13073 5.30428 5.32433 5.37202 5.50653 5.56010 5.67095 5.73207 5.87133 6.10366 6.39244 6.61660 6.63526 7.16974 7.26976 8.74517 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024199 B = 0.003430 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.774455 B = 8161.339287 C = 8757.756658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.047 4.047 3 C -0.165 4.165 4 C -0.048 4.048 5 C -0.113 4.113 6 C -0.186 4.186 7 C 0.115 3.885 8 O -0.324 6.324 9 C 0.056 3.944 10 C 0.495 3.505 11 O -0.592 6.592 12 N -0.590 5.590 13 C 0.071 3.929 14 C 0.221 3.779 15 H 0.036 0.964 16 C -0.138 4.138 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.031 3.969 20 N -0.932 5.932 21 Si 0.921 3.079 22 H -0.289 1.289 23 H -0.250 1.250 24 H -0.275 1.275 25 C -0.225 4.225 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.149 0.851 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.269 0.731 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.523 21.160 8.600 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.047 4.047 3 C -0.183 4.183 4 C -0.048 4.048 5 C -0.169 4.169 6 C -0.204 4.204 7 C 0.070 3.930 8 O -0.237 6.237 9 C -0.022 4.022 10 C 0.283 3.717 11 O -0.473 6.473 12 N -0.322 5.322 13 C -0.071 4.071 14 C 0.119 3.881 15 H 0.054 0.946 16 C -0.197 4.197 17 C -0.558 4.558 18 H 0.079 0.921 19 C -0.169 4.169 20 N -0.571 5.571 21 Si 0.747 3.253 22 H -0.215 1.215 23 H -0.174 1.174 24 H -0.200 1.200 25 C -0.244 4.244 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.166 0.834 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.634 21.043 8.479 25.496 hybrid contribution 1.195 -0.674 -0.343 1.414 sum -10.439 20.369 8.137 24.291 Atomic orbital electron populations 1.20882 0.88584 1.04106 1.03426 1.20100 0.97684 0.91921 0.94979 1.21169 0.93149 0.98654 1.05319 1.20005 0.94379 0.94710 0.95685 1.20864 1.00068 0.92631 1.03379 1.20483 1.00332 0.90157 1.09458 1.19340 0.91707 0.85175 0.96812 1.86127 1.36150 1.12570 1.88899 1.22587 0.92710 0.81032 1.05852 1.20780 0.88858 0.85185 0.76856 1.90651 1.17991 1.86259 1.52424 1.48225 1.09093 1.04672 1.70212 1.22020 0.77872 1.03980 1.03183 1.19149 0.90845 0.83192 0.94899 0.94639 1.22065 1.02377 0.99203 0.96006 1.21365 0.95746 1.28087 1.10619 0.92132 1.25577 1.02115 0.94546 0.94624 1.69971 1.33561 1.30855 1.22706 0.86153 0.81448 0.77291 0.80448 1.21525 1.17402 1.19988 1.21363 0.91850 1.00573 1.10567 0.90018 0.90566 0.89842 0.83377 0.90040 0.89364 0.91343 0.86295 0.86922 0.85833 0.89938 0.89165 0.91230 0.93178 0.93362 0.91382 0.92191 0.83723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.24 0.71 -0.55 16 2 C -0.05 -0.85 5.88 -19.88 -0.12 -0.96 16 3 C -0.16 -2.90 9.35 22.28 0.21 -2.69 16 4 C -0.05 -0.97 5.88 -19.88 -0.12 -1.09 16 5 C -0.11 -1.57 10.01 71.23 0.71 -0.86 16 6 C -0.19 -4.97 9.64 22.37 0.22 -4.75 16 7 C 0.11 3.28 6.69 22.51 0.15 3.43 16 8 O -0.32 -11.31 9.67 -73.40 -0.71 -12.02 16 9 C 0.06 1.64 3.77 71.23 0.27 1.91 16 10 C 0.50 20.41 7.75 87.66 0.68 21.09 16 11 O -0.59 -30.91 15.83 16.01 0.25 -30.65 16 12 N -0.59 -23.49 2.75 -826.79 -2.28 -25.77 16 13 C 0.07 1.98 9.40 127.77 1.20 3.19 16 14 C 0.22 10.53 2.27 44.25 0.10 10.63 16 15 H 0.04 1.91 4.11 -2.39 -0.01 1.90 16 16 C -0.14 -5.50 9.09 71.98 0.65 -4.85 16 17 C -0.52 -28.56 8.72 25.60 0.22 -28.33 16 18 H 0.06 3.49 6.82 -2.91 -0.02 3.47 16 19 C 0.03 1.82 5.47 84.66 0.46 2.28 16 20 N -0.93 -56.91 13.96 21.45 0.30 -56.61 16 21 Si 0.92 46.84 26.91 68.60 1.85 48.69 16 22 H -0.29 -15.45 7.11 99.48 0.71 -14.74 16 23 H -0.25 -12.06 6.73 99.48 0.67 -11.39 16 24 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 25 C -0.23 -4.97 8.69 22.37 0.19 -4.78 16 26 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 28 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 29 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16 32 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 33 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 34 H 0.11 2.73 6.91 -2.39 -0.02 2.71 16 35 H 0.12 2.66 7.64 -2.39 -0.02 2.64 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.87 6.44 -2.38 -0.02 1.86 16 38 H 0.07 2.22 6.56 -2.38 -0.02 2.20 16 39 H 0.05 2.04 7.97 -2.39 -0.02 2.02 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 2.45 7.86 -2.38 -0.02 2.44 16 42 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 43 H 0.15 2.53 6.30 -2.91 -0.02 2.51 16 Total: -1.00 -77.49 352.63 5.93 -71.56 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.96 Total: 11.12 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 5.55 Total: -6.32 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -1.98 Total: -82.38 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.46 Total: -42.67 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.85 Total: 48.69 kcal Total: -77.49 5.93 -71.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609143211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.310 kcal (2) G-P(sol) polarization free energy of solvation -77.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds