Wall clock time and date at job start Tue Mar 31 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94321 * 2 1 4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47242 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47188 * 179.97438 * 9 8 7 11 11 O 1.21274 * 119.99891 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99647 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99752 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47293 * 179.97438 * 13 12 10 15 15 C 1.50704 * 109.47188 * 179.97438 * 14 13 12 16 16 H 1.07992 * 119.99812 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99992 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99984 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00093 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47148 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47236 * 119.99826 * 19 17 15 22 22 H 1.48495 * 109.47459 * 239.99780 * 19 17 15 23 23 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 24 24 C 1.38145 * 119.94323 * 359.49123 * 23 5 4 25 25 H 1.08999 * 109.46991 * 90.00243 * 1 2 3 26 26 H 1.09001 * 109.46891 * 210.00393 * 1 2 3 27 27 H 1.08994 * 109.47121 * 330.00356 * 1 2 3 28 28 H 1.08008 * 119.97007 * 359.94743 * 3 2 1 29 29 H 1.08001 * 120.02451 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 31 31 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 32 32 H 1.08999 * 109.47084 * 299.99957 * 8 7 6 33 33 H 1.08996 * 109.47090 * 59.99784 * 8 7 6 34 34 H 1.08999 * 109.47046 * 299.99980 * 9 8 7 35 35 H 1.09006 * 109.46791 * 59.99742 * 9 8 7 36 36 H 0.97004 * 120.00486 * 0.02562 * 12 10 9 37 37 H 1.08999 * 109.47172 * 299.99959 * 13 12 10 38 38 H 1.08998 * 109.47454 * 59.99826 * 13 12 10 39 39 H 1.08999 * 109.47046 * 300.00119 * 14 13 12 40 40 H 1.09004 * 109.47100 * 60.00306 * 14 13 12 41 41 H 0.96998 * 119.99836 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.02769 * 179.72249 * 23 5 4 43 43 H 1.08006 * 119.97076 * 180.25587 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2813 -1.2731 0.0022 8 6 7.7981 -1.0726 0.0027 9 6 8.4927 -2.4358 0.0027 10 6 9.9867 -2.2383 0.0026 11 8 10.4502 -1.1176 0.0021 12 7 10.8077 -3.3072 0.0021 13 6 12.2601 -3.1152 0.0025 14 6 12.9547 -4.4784 0.0024 15 6 14.4488 -4.2809 0.0022 16 1 14.8615 -3.2829 0.0027 17 6 15.2887 -5.3743 0.0015 18 7 14.7860 -6.5897 0.0015 19 14 17.1405 -5.1295 0.0021 20 1 17.4478 -3.6767 0.0039 21 1 17.7228 -5.7596 1.2143 22 1 17.7233 -5.7577 -1.2107 23 6 3.5787 -1.2007 -0.0033 24 6 2.1973 -1.1980 0.0014 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6558 2.1327 -0.0009 29 1 4.1172 2.1370 0.0001 30 1 5.9884 -1.8297 0.8924 31 1 5.9884 -1.8305 -0.8875 32 1 8.0913 -0.5158 -0.8873 33 1 8.0905 -0.5154 0.8926 34 1 8.1995 -2.9930 0.8925 35 1 8.2001 -2.9926 -0.8875 36 1 10.4370 -4.2036 0.0013 37 1 12.5532 -2.5576 -0.8870 38 1 12.5528 -2.5588 0.8929 39 1 12.6616 -5.0356 0.8921 40 1 12.6622 -5.0352 -0.8879 41 1 15.3769 -7.3589 0.0007 42 1 4.1174 -2.1367 -0.0070 43 1 1.6559 -2.1326 0.0018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612060920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:51 Heat of formation + Delta-G solvation = -81.942347 kcal Electronic energy + Delta-G solvation = -21180.244925 eV Core-core repulsion = 17803.535677 eV Total energy + Delta-G solvation = -3376.709247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44163 -39.33565 -38.03417 -35.00445 -33.96768 -32.85925 -32.12805 -31.33982 -29.85537 -27.75331 -26.30872 -24.71850 -23.40248 -21.98398 -21.29733 -20.91738 -19.99494 -18.44444 -16.95853 -16.62559 -16.37690 -15.96981 -15.62163 -15.35487 -15.10141 -14.61848 -14.46912 -14.20051 -13.85599 -13.83139 -13.80371 -13.05944 -12.95781 -12.48170 -12.43060 -12.21119 -12.18652 -11.81563 -11.65123 -11.36456 -11.21947 -11.06047 -10.99475 -10.74928 -10.64194 -10.35994 -9.83285 -9.48789 -9.32476 -9.20070 -8.56982 -8.37882 -8.33095 -6.11621 -4.14391 1.02177 1.11125 2.85087 2.97155 3.27057 3.34712 3.39778 3.43345 3.72904 4.39981 4.44173 4.52954 4.63292 4.68128 4.69927 4.82621 4.93609 5.01567 5.06722 5.16922 5.23360 5.25112 5.25630 5.32723 5.39211 5.50445 5.58032 5.72447 5.90722 5.97151 6.05004 6.12399 6.28596 6.32220 6.32648 6.49093 6.71641 6.89294 7.17440 7.49244 7.58909 7.86695 7.98443 8.25519 8.62522 8.91906 9.50703 10.99995 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.061595 B = 0.001752 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.470156 B =15979.142420 C =16391.957725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.131 4.131 3 C -0.082 4.082 4 C -0.150 4.150 5 C 0.129 3.871 6 O -0.313 6.313 7 C 0.060 3.940 8 C -0.103 4.103 9 C -0.139 4.139 10 C 0.505 3.495 11 O -0.550 6.550 12 N -0.723 5.723 13 C 0.121 3.879 14 C 0.011 3.989 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.206 4.206 24 C -0.081 4.081 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.398 0.602 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.261 0.739 42 H 0.129 0.871 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.611 9.423 -0.018 30.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.131 4.131 3 C -0.100 4.100 4 C -0.169 4.169 5 C 0.083 3.917 6 O -0.226 6.226 7 C -0.015 4.015 8 C -0.141 4.141 9 C -0.179 4.179 10 C 0.290 3.710 11 O -0.429 6.429 12 N -0.373 5.373 13 C -0.002 4.002 14 C -0.026 4.026 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.225 4.225 24 C -0.099 4.099 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.231 0.769 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.147 0.853 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -28.050 10.198 -0.016 29.847 hybrid contribution 0.869 -0.828 -0.005 1.200 sum -27.182 9.370 -0.021 28.751 Atomic orbital electron populations 1.20714 0.91134 1.02592 1.02113 1.19832 0.96209 0.93091 1.03958 1.20849 0.92979 0.97776 0.98356 1.20466 0.93780 0.96474 1.06175 1.19055 0.82552 0.94150 0.95931 1.86086 1.16057 1.32216 1.88267 1.22881 0.93412 0.83788 1.01425 1.21219 0.90376 0.97058 1.05433 1.21534 0.93076 0.98708 1.04560 1.20439 0.88639 0.85147 0.76759 1.90688 1.77973 1.23939 1.50251 1.46348 1.08586 1.08583 1.73783 1.21723 0.76348 1.01286 1.00796 1.19336 0.95404 0.90005 0.97844 1.21097 0.90683 0.93011 1.51227 0.92186 1.25001 0.99218 0.95126 0.94966 1.69966 1.35137 0.97731 1.50480 0.86452 0.85043 0.78430 0.77622 1.19570 1.20927 1.20923 1.21287 0.95383 0.97225 1.08593 1.20836 0.93302 0.97702 0.98021 0.91472 0.91753 0.91714 0.85474 0.85133 0.91868 0.91864 0.89946 0.89940 0.88776 0.88779 0.76866 0.92569 0.92576 0.95927 0.95929 0.92899 0.85337 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.01 36.01 0.36 -0.21 16 2 C -0.13 -1.01 5.88 -104.60 -0.62 -1.63 16 3 C -0.08 -0.65 9.69 -39.61 -0.38 -1.04 16 4 C -0.15 -1.43 9.99 -39.44 -0.39 -1.82 16 5 C 0.13 1.35 6.69 -39.22 -0.26 1.09 16 6 O -0.31 -3.59 10.14 -19.44 -0.20 -3.78 16 7 C 0.06 0.55 4.74 37.16 0.18 0.73 16 8 C -0.10 -1.14 4.87 -26.73 -0.13 -1.27 16 9 C -0.14 -1.46 5.70 -27.88 -0.16 -1.62 16 10 C 0.50 8.11 7.83 -10.98 -0.09 8.02 16 11 O -0.55 -11.13 15.98 5.56 0.09 -11.04 16 12 N -0.72 -12.16 5.56 -60.30 -0.33 -12.50 16 13 C 0.12 2.55 5.61 -4.04 -0.02 2.53 16 14 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 15 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 19 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 C -0.21 -1.86 9.04 -39.44 -0.36 -2.21 16 24 C -0.08 -0.65 9.69 -39.61 -0.38 -1.03 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 27 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 28 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 30 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 31 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 32 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 33 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.40 5.64 8.47 -40.82 -0.35 5.29 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 43 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -32.84 364.90 -8.96 -41.81 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.92 Total: 0.48 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.81 Total: -11.53 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.40 Total: -37.74 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.11 Total: -14.82 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.84 -8.96 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612060920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.137 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds